RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 BCCIPQ9P287 314 aaKnown RBP eCLIP8.75□□□□□ -1.01
USP54-203ENST00000418501 INPPL1O15357 1258 aa8.75□□□□□ -1.01
USP54-203ENST00000418501 PQBP1O60828 265 aaKnown RBP8.75□□□□□ -1.01
USP54-203ENST00000418501 CCL5P13501 91 aa8.75□□□□□ -1.01
USP54-203ENST00000418501 RARGP13631 454 aa8.75□□□□□ -1.01
USP54-203ENST00000418501 CARSP49589 748 aaKnown RBP8.75□□□□□ -1.01
USP54-203ENST00000418501 CLCNKBP51801 687 aa8.75□□□□□ -1.01
USP54-203ENST00000418501 RPL7AP62424 266 aaKnown RBP8.75□□□□□ -1.01
USP54-203ENST00000418501 ADIGQ0VDE8 80 aa8.75□□□□□ -1.01
USP54-203ENST00000418501 P3H1Q32P28 736 aa8.75□□□□□ -1.01
USP54-203ENST00000418501 DUPD1Q68J44 220 aa8.75□□□□□ -1.01
USP54-203ENST00000418501 SCN4BQ8IWT1 228 aa8.75□□□□□ -1.01
USP54-203ENST00000418501 SCML4Q8N228 414 aa8.75□□□□□ -1.01
USP54-203ENST00000418501 LPPQ93052 612 aa8.75□□□□□ -1.01
USP54-203ENST00000418501 NKD2Q969F2 451 aaPredicted RBP8.75□□□□□ -1.01
USP54-203ENST00000418501 EXOC4Q96A65 974 aa8.75□□□□□ -1.01
USP54-203ENST00000418501 EPC1Q9H2F5 836 aa8.75□□□□□ -1.01
USP54-203ENST00000418501 TMEM39AQ9NV64 488 aa8.75□□□□□ -1.01
USP54-203ENST00000418501 CHORDC1Q9UHD1 332 aaPredicted RBP8.75□□□□□ -1.01
USP54-203ENST00000418501 SHOC2Q9UQ13 582 aa8.75□□□□□ -1.01
USP54-203ENST00000418501 ATP8A1Q9Y2Q0 1164 aa8.75□□□□□ -1.01
USP54-203ENST00000418501 LTFP02788 710 aa8.75□□□□□ -1.01
USP54-203ENST00000418501 MAP3K7CLP57077 242 aa8.75□□□□□ -1.01
USP54-203ENST00000418501 DYNLT1P63172 113 aa8.75□□□□□ -1.01
USP54-203ENST00000418501 UPP1Q16831 310 aa8.75□□□□□ -1.01
USP54-203ENST00000418501 PPP6R3Q5H9R7 873 aaPredicted RBP8.75□□□□□ -1.01
USP54-203ENST00000418501 AGBL2Q5U5Z8 902 aa8.75□□□□□ -1.01
USP54-203ENST00000418501 HEATR6Q6AI08 1181 aaKnown RBP8.75□□□□□ -1.01
USP54-203ENST00000418501 MFSD7Q6UXD7 560 aa8.75□□□□□ -1.01
USP54-203ENST00000418501 AGMOQ6ZNB7 445 aa8.75□□□□□ -1.01
USP54-203ENST00000418501 BEND5Q7L4P6 421 aa8.75□□□□□ -1.01
USP54-203ENST00000418501 CTU1Q7Z7A3 348 aaKnown RBP8.75□□□□□ -1.01
USP54-203ENST00000418501 RIBC1Q8N443 379 aaPredicted RBP8.75□□□□□ -1.01
USP54-203ENST00000418501 TMEM199Q8N511 208 aa8.75□□□□□ -1.01
USP54-203ENST00000418501 SPPL2BQ8TCT7 592 aa8.75□□□□□ -1.01
USP54-203ENST00000418501 ZFP42Q96MM3 310 aa8.75□□□□□ -1.01
USP54-203ENST00000418501 TWNKQ96RR1 684 aa8.75□□□□□ -1.01
USP54-203ENST00000418501 PHACTR1Q9C0D0 580 aa8.75□□□□□ -1.01
USP54-203ENST00000418501 NACA2Q9H009 215 aa8.75□□□□□ -1.01
USP54-203ENST00000418501 CATSPERBQ9H7T0 1116 aa8.75□□□□□ -1.01
USP54-203ENST00000418501 AP4E1Q9UPM8 1137 aa8.75□□□□□ -1.01
USP54-203ENST00000418501 PI4K2BG5E9Z4 385 aa8.74□□□□□ -1.01
USP54-203ENST00000418501 GABRDO14764 452 aa8.74□□□□□ -1.01
USP54-203ENST00000418501 TSHRP16473 764 aa8.74□□□□□ -1.01
USP54-203ENST00000418501 TUFMP49411 452 aaKnown RBP8.74□□□□□ -1.01
USP54-203ENST00000418501 ARSEP51690 589 aa8.74□□□□□ -1.01
USP54-203ENST00000418501 PLD1Q13393 1074 aa8.74□□□□□ -1.01
USP54-203ENST00000418501 STAT4Q14765 748 aa8.74□□□□□ -1.01
USP54-203ENST00000418501 PPP1R15BQ5SWA1 713 aa8.74□□□□□ -1.01
USP54-203ENST00000418501 PPIL6Q8IXY8 311 aa8.74□□□□□ -1.01
USP54-203ENST00000418501 LZTR1Q8N653 840 aa8.74□□□□□ -1.01
USP54-203ENST00000418501 EEF2KO00418 725 aaKnown RBP8.74□□□□□ -1.01
USP54-203ENST00000418501 PTGESO14684 152 aa8.74□□□□□ -1.01
USP54-203ENST00000418501 CTGFP29279 349 aa8.74□□□□□ -1.01
USP54-203ENST00000418501 FDFT1P37268 417 aa8.74□□□□□ -1.01
USP54-203ENST00000418501 TAS2R40P59535 323 aa8.74□□□□□ -1.01
USP54-203ENST00000418501 TPI1P60174 286 aa8.74□□□□□ -1.01
USP54-203ENST00000418501 C2CD6Q53TS8 623 aa8.74□□□□□ -1.01
USP54-203ENST00000418501 CNKSR3Q6P9H4 555 aa8.74□□□□□ -1.01
USP54-203ENST00000418501 MICALCLQ6ZW33 695 aa8.74□□□□□ -1.01
USP54-203ENST00000418501 SCUBE3Q8IX30 993 aa8.74□□□□□ -1.01
USP54-203ENST00000418501 PALM2Q8IXS6 379 aa8.74□□□□□ -1.01
USP54-203ENST00000418501 BBS5Q8N3I7 341 aa8.74□□□□□ -1.01
USP54-203ENST00000418501 EMC1Q8N766 993 aa8.74□□□□□ -1.01
USP54-203ENST00000418501 SH3TC2Q8TF17 1288 aa8.74□□□□□ -1.01
USP54-203ENST00000418501 MYLPFQ96A32 169 aa8.74□□□□□ -1.01
USP54-203ENST00000418501 TRIM51Q9BSJ1 452 aa8.74□□□□□ -1.01
USP54-203ENST00000418501 FAM107BQ9H098 131 aa8.74□□□□□ -1.01
USP54-203ENST00000418501 NSRP1Q9H0G5 558 aaKnown RBP8.74□□□□□ -1.01
USP54-203ENST00000418501 PLAAQ9Y263 795 aa8.74□□□□□ -1.01
USP54-203ENST00000418501 C9IYK1 514 aa8.74□□□□□ -1.01
USP54-203ENST00000418501 M0QYT0 321 aa8.74□□□□□ -1.01
USP54-203ENST00000418501 M0QZQ0 153 aa8.74□□□□□ -1.01
USP54-203ENST00000418501 LIASO43766 372 aa8.74□□□□□ -1.01
USP54-203ENST00000418501 LRCH4O75427 683 aa8.74□□□□□ -1.01
USP54-203ENST00000418501 RBP3P10745 1247 aa8.74□□□□□ -1.01
USP54-203ENST00000418501 NCAM1P13591 858 aa8.74□□□□□ -1.01
USP54-203ENST00000418501 PPM1AP35813 382 aa8.74□□□□□ -1.01
USP54-203ENST00000418501 GPS1Q13098 491 aa8.74□□□□□ -1.01
USP54-203ENST00000418501 BRMS1LQ5PSV4 323 aa8.74□□□□□ -1.01
USP54-203ENST00000418501 PMF1Q6P1K2 205 aa8.74□□□□□ -1.01
USP54-203ENST00000418501 VPS52Q8N1B4 723 aa8.74□□□□□ -1.01
USP54-203ENST00000418501 STKLD1Q8NE28 680 aa8.74□□□□□ -1.01
USP54-203ENST00000418501 PDZD8Q8NEN9 1154 aa8.74□□□□□ -1.01
USP54-203ENST00000418501 CMASQ8NFW8 434 aaPredicted RBP8.74□□□□□ -1.01
USP54-203ENST00000418501 SLC7A14Q8TBB6 771 aa8.74□□□□□ -1.01
USP54-203ENST00000418501 SERPINB11Q96P15 392 aa8.74□□□□□ -1.01
USP54-203ENST00000418501 PABPC3Q9H361 631 aaKnown RBP8.74□□□□□ -1.01
USP54-203ENST00000418501 AGO3Q9H9G7 860 aaKnown RBP8.74□□□□□ -1.01
USP54-203ENST00000418501 GRIN2DO15399 1336 aa8.74□□□□□ -1.01
USP54-203ENST00000418501 A0A087WUV0 522 aaPredicted RBP8.73□□□□□ -1.01
USP54-203ENST00000418501 ABHD14A-ACY1A0A1B0GW23 586 aa8.73□□□□□ -1.01
USP54-203ENST00000418501 FAM170AA1A519 330 aa8.73□□□□□ -1.01
USP54-203ENST00000418501 RNF40O75150 1001 aa8.73□□□□□ -1.01
USP54-203ENST00000418501 CALCAP01258 141 aa8.73□□□□□ -1.01
USP54-203ENST00000418501 KLHL38Q2WGJ6 581 aa8.73□□□□□ -1.01
USP54-203ENST00000418501 OLFML1Q6UWY5 402 aa8.73□□□□□ -1.01
USP54-203ENST00000418501 CEP57Q86XR8 500 aa8.73□□□□□ -1.01
USP54-203ENST00000418501 LRRC49Q8IUZ0 686 aa8.73□□□□□ -1.01
USP54-203ENST00000418501 DEFB106AQ8N104 65 aa8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms