RNA–Protein interactions for RNA: ENST00000417285.6

VEGFA-208, Transcript of vascular endothelial growth factor A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VEGFA, Length 1,081 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-208ENST00000417285 NACA2Q9H009 215 aa26.78■■□□□ 1.88
VEGFA-208ENST00000417285 CCSER2Q9H7U1 834 aa26.78■■□□□ 1.88
VEGFA-208ENST00000417285 MMRN2Q9H8L6 949 aa26.78■■□□□ 1.88
VEGFA-208ENST00000417285 APOBEC3GQ9HC16 384 aaKnown RBP26.78■■□□□ 1.88
VEGFA-208ENST00000417285 PNPLA8Q9NP80 782 aa26.78■■□□□ 1.88
VEGFA-208ENST00000417285 GMIPQ9P107 970 aa26.78■■□□□ 1.88
VEGFA-208ENST00000417285 SH3BP1Q9Y3L3 701 aa26.78■■□□□ 1.88
VEGFA-208ENST00000417285 EPB41P11171 864 aaKnown RBP26.77■■□□□ 1.88
VEGFA-208ENST00000417285 PRCPP42785 496 aa26.77■■□□□ 1.88
VEGFA-208ENST00000417285 ATXN1P54253 815 aaKnown RBP26.77■■□□□ 1.88
VEGFA-208ENST00000417285 ZFRQ96KR1 1074 aaKnown RBP26.77■■□□□ 1.88
VEGFA-208ENST00000417285 PALM2-AKAP2B1ALY0 433 aaPredicted RBP26.76■■□□□ 1.87
VEGFA-208ENST00000417285 CILPO75339 1184 aa26.76■■□□□ 1.87
VEGFA-208ENST00000417285 ADORA2BP29275 332 aa26.76■■□□□ 1.87
VEGFA-208ENST00000417285 MRPS21P82921 87 aaKnown RBP26.76■■□□□ 1.87
VEGFA-208ENST00000417285 GAD2Q05329 585 aa26.76■■□□□ 1.87
VEGFA-208ENST00000417285 PREPLQ4J6C6 727 aaPredicted RBP26.76■■□□□ 1.87
VEGFA-208ENST00000417285 HHIPQ96QV1 700 aa26.76■■□□□ 1.87
VEGFA-208ENST00000417285 FAM124BQ9H5Z6 455 aaPredicted RBP26.76■■□□□ 1.87
VEGFA-208ENST00000417285 UTP3Q9NQZ2 479 aaKnown RBP eCLIP26.76■■□□□ 1.877e-7■■■■□ 19.4
VEGFA-208ENST00000417285 POLR3BQ9NW08 1133 aaPredicted RBP26.76■■□□□ 1.87
VEGFA-208ENST00000417285 SCML2Q9UQR0 700 aa26.76■■□□□ 1.87
VEGFA-208ENST00000417285 PCDHA5Q9Y5H7 936 aa26.76■■□□□ 1.87
VEGFA-208ENST00000417285 NCOR2Q9Y618 2525 aa26.76■■□□□ 1.87
VEGFA-208ENST00000417285 APODP05090 189 aa26.75■■□□□ 1.87
VEGFA-208ENST00000417285 ADH5P11766 374 aa26.75■■□□□ 1.87
VEGFA-208ENST00000417285 GRIA2P42262 883 aa26.75■■□□□ 1.87
VEGFA-208ENST00000417285 C2orf27AQ580R0 203 aa26.75■■□□□ 1.87
VEGFA-208ENST00000417285 PRR23CQ6ZRP0 262 aa26.75■■□□□ 1.87
VEGFA-208ENST00000417285 CLEC20AQ6ZU45 233 aa26.75■■□□□ 1.87
VEGFA-208ENST00000417285 SPATA20Q8TB22 786 aa26.75■■□□□ 1.87
VEGFA-208ENST00000417285 NETO1Q8TDF5 533 aa26.75■■□□□ 1.87
VEGFA-208ENST00000417285 TWNKQ96RR1 684 aa26.75■■□□□ 1.87
VEGFA-208ENST00000417285 DYNC1LI1Q9Y6G9 523 aaKnown RBP26.75■■□□□ 1.87
VEGFA-208ENST00000417285 ATG2BQ96BY7 2078 aa26.74■■□□□ 1.87
VEGFA-208ENST00000417285 TLR5O60602 858 aa26.74■■□□□ 1.87
VEGFA-208ENST00000417285 KAT7O95251 611 aa26.74■■□□□ 1.87
VEGFA-208ENST00000417285 CD58P19256 250 aa26.74■■□□□ 1.87
VEGFA-208ENST00000417285 TNFRSF4P43489 277 aa26.74■■□□□ 1.87
VEGFA-208ENST00000417285 SLC6A11P48066 632 aa26.74■■□□□ 1.87
VEGFA-208ENST00000417285 HSF5Q4G112 596 aaPredicted RBP26.74■■□□□ 1.87
VEGFA-208ENST00000417285 LY6G5CQ5SRR4 150 aa26.74■■□□□ 1.87
VEGFA-208ENST00000417285 BTBD8Q5XKL5 378 aa26.74■■□□□ 1.87
VEGFA-208ENST00000417285 KBTBD6Q86V97 674 aa26.74■■□□□ 1.87
VEGFA-208ENST00000417285 FBXL13Q8NEE6 735 aa26.74■■□□□ 1.87
VEGFA-208ENST00000417285 TSTD1Q8NFU3 115 aa26.74■■□□□ 1.87
VEGFA-208ENST00000417285 WHAMMQ8TF30 809 aa26.74■■□□□ 1.87
VEGFA-208ENST00000417285 EEF2KMTQ96G04 330 aa26.74■■□□□ 1.87
VEGFA-208ENST00000417285 RAB20Q9NX57 234 aa26.74■■□□□ 1.87
VEGFA-208ENST00000417285 PCDHGA5Q9Y5G8 931 aa26.74■■□□□ 1.87
VEGFA-208ENST00000417285 SDK1Q7Z5N4 2213 aa26.73■■□□□ 1.87
VEGFA-208ENST00000417285 SCAMP3O14828 347 aaKnown RBP26.73■■□□□ 1.87
VEGFA-208ENST00000417285 ATP5C1P36542 298 aaKnown RBP26.73■■□□□ 1.87
VEGFA-208ENST00000417285 MXI1P50539 228 aa26.73■■□□□ 1.87
VEGFA-208ENST00000417285 SEC13P55735 322 aa26.73■■□□□ 1.87
VEGFA-208ENST00000417285 GOLGA8FQ08AF8 430 aa26.73■■□□□ 1.87
VEGFA-208ENST00000417285 GOLGA8DPQ0D2H9 430 aa26.73■■□□□ 1.87
VEGFA-208ENST00000417285 NUDT18Q6ZVK8 323 aa26.73■■□□□ 1.87
VEGFA-208ENST00000417285 HTR3DQ70Z44 454 aa26.73■■□□□ 1.87
VEGFA-208ENST00000417285 ELOA2Q8IYF1 753 aaPredicted RBP26.73■■□□□ 1.87
VEGFA-208ENST00000417285 ERCC4Q92889 916 aaPredicted RBP26.73■■□□□ 1.87
VEGFA-208ENST00000417285 DUSP16Q9BY84 665 aa26.73■■□□□ 1.87
VEGFA-208ENST00000417285 CYLDQ9NQC7 956 aa26.73■■□□□ 1.87
VEGFA-208ENST00000417285 ARHGEF4Q9NR80 690 aa26.73■■□□□ 1.87
VEGFA-208ENST00000417285 MMP17Q9ULZ9 603 aa26.73■■□□□ 1.87
VEGFA-208ENST00000417285 HELZP42694 1942 aaKnown RBP26.73■■□□□ 1.87
VEGFA-208ENST00000417285 HHLA1C9JL84 531 aa26.72■■□□□ 1.87
VEGFA-208ENST00000417285 SLC16A3O15427 465 aaKnown RBP26.72■■□□□ 1.87
VEGFA-208ENST00000417285 RHOBTB1O94844 696 aa26.72■■□□□ 1.87
VEGFA-208ENST00000417285 EPN2O95208 641 aa26.72■■□□□ 1.87
VEGFA-208ENST00000417285 ZNF806P0C7X5 589 aa26.72■■□□□ 1.87
VEGFA-208ENST00000417285 ACO1P21399 889 aaKnown RBP26.72■■□□□ 1.87
VEGFA-208ENST00000417285 PSEN1P49768 467 aa26.72■■□□□ 1.87
VEGFA-208ENST00000417285 DGKEP52429 567 aa26.72■■□□□ 1.87
VEGFA-208ENST00000417285 FKBP3Q00688 224 aaKnown RBP26.72■■□□□ 1.87
VEGFA-208ENST00000417285 STIM1Q13586 685 aa26.72■■□□□ 1.87
VEGFA-208ENST00000417285 USP39Q53GS9 565 aaKnown RBP26.72■■□□□ 1.87
VEGFA-208ENST00000417285 KLHDC10Q6PID8 442 aa26.72■■□□□ 1.87
VEGFA-208ENST00000417285 C11orf74Q86VG3 221 aa26.72■■□□□ 1.87
VEGFA-208ENST00000417285 KCNV2Q8TDN2 545 aa26.72■■□□□ 1.87
VEGFA-208ENST00000417285 HEXIM2Q96MH2 286 aaKnown RBP26.72■■□□□ 1.87
VEGFA-208ENST00000417285 ARRDC1-AS1Q9H2J1 176 aa26.72■■□□□ 1.87
VEGFA-208ENST00000417285 HOXC11O43248 304 aaPredicted RBP26.71■■□□□ 1.87
VEGFA-208ENST00000417285 PGFP49763 221 aa26.71■■□□□ 1.87
VEGFA-208ENST00000417285 LRRC63Q05C16 580 aa26.71■■□□□ 1.87
VEGFA-208ENST00000417285 ELF2Q15723 593 aa26.71■■□□□ 1.87
VEGFA-208ENST00000417285 PLK5Q496M5 336 aa26.71■■□□□ 1.87
VEGFA-208ENST00000417285 TADA2BQ86TJ2 420 aa26.71■■□□□ 1.87
VEGFA-208ENST00000417285 BBS7Q8IWZ6 715 aa26.71■■□□□ 1.87
VEGFA-208ENST00000417285 ZNF276Q8N554 614 aa26.71■■□□□ 1.87
VEGFA-208ENST00000417285 SEMA4DQ92854 862 aa26.71■■□□□ 1.87
VEGFA-208ENST00000417285 KLF16Q9BXK1 252 aaPredicted RBP26.71■■□□□ 1.87
VEGFA-208ENST00000417285 UBXN6Q9BZV1 441 aa26.71■■□□□ 1.87
VEGFA-208ENST00000417285 SPHK2Q9NRA0 654 aa26.71■■□□□ 1.87
VEGFA-208ENST00000417285 LOC105378220A0A1B0GUY1 285 aaPredicted RBP26.7■■□□□ 1.86
VEGFA-208ENST00000417285 MED19A0JLT2 244 aaPredicted RBP26.7■■□□□ 1.86
VEGFA-208ENST00000417285 SLC30A4O14863 429 aa26.7■■□□□ 1.86
VEGFA-208ENST00000417285 ALDH1A2O94788 518 aa26.7■■□□□ 1.86
VEGFA-208ENST00000417285 TBX18O95935 607 aa26.7■■□□□ 1.86
VEGFA-208ENST00000417285 KIF11P52732 1056 aa26.7■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms