RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 UBE3CQ15386 1083 aa13.73□□□□□ -0.21
CCDC88A-204ENST00000413716 ARHGEF19Q8IW93 802 aa13.73□□□□□ -0.21
CCDC88A-204ENST00000413716 SLC25A41Q8N5S1 370 aa13.73□□□□□ -0.21
CCDC88A-204ENST00000413716 KBTBD7Q8WVZ9 684 aa13.73□□□□□ -0.21
CCDC88A-204ENST00000413716 FRMD8Q9BZ67 464 aaPredicted RBP13.73□□□□□ -0.21
CCDC88A-204ENST00000413716 ELL3Q9HB65 397 aaPredicted RBP13.73□□□□□ -0.21
CCDC88A-204ENST00000413716 SLC35C2Q9NQQ7 365 aa13.73□□□□□ -0.21
CCDC88A-204ENST00000413716 LNPEPQ9UIQ6 1025 aa13.73□□□□□ -0.21
CCDC88A-204ENST00000413716 TMEM5Q9Y2B1 443 aa13.73□□□□□ -0.21
CCDC88A-204ENST00000413716 USP19O94966 1318 aa13.73□□□□□ -0.21
CCDC88A-204ENST00000413716 ULK1O75385 1050 aa13.73□□□□□ -0.21
CCDC88A-204ENST00000413716 KATNA1O75449 491 aa13.73□□□□□ -0.21
CCDC88A-204ENST00000413716 NUDT14O95848 222 aa13.73□□□□□ -0.21
CCDC88A-204ENST00000413716 TBCELQ5QJ74 424 aa13.73□□□□□ -0.21
CCDC88A-204ENST00000413716 PHACTR4Q8IZ21 702 aa13.73□□□□□ -0.21
CCDC88A-204ENST00000413716 TDRD5Q8NAT2 981 aaKnown RBP13.73□□□□□ -0.21
CCDC88A-204ENST00000413716 SYTL5Q8TDW5 730 aaPredicted RBP13.73□□□□□ -0.21
CCDC88A-204ENST00000413716 RAD54LQ92698 747 aa13.73□□□□□ -0.21
CCDC88A-204ENST00000413716 CASZ1Q86V15 1759 aa13.73□□□□□ -0.21
CCDC88A-204ENST00000413716 ADCY6O43306 1168 aa13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 PRLP01236 227 aa13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 BICRALQ6AI39 1079 aa13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 SLC20A1Q8WUM9 679 aa13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 C14orf93Q9H972 538 aaKnown RBP13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 RBM7Q9Y580 266 aaKnown RBP13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 PRG2P13727 222 aa13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 SFNP31947 248 aa13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 PACS1Q6VY07 963 aa13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 ARID3BQ8IVW6 561 aaPredicted RBP13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 FNIP1Q8TF40 1166 aa13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 UGT2B28Q9BY64 529 aa13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 CHORDC1Q9UHD1 332 aaPredicted RBP13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 LRCH1Q9Y2L9 728 aa13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 PLOD2O00469 737 aa13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 CYP7B1O75881 506 aa13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 HIRAP54198 1017 aaPredicted RBP13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 POU5F1Q01860 360 aaKnown RBP13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 OR52L1Q8NGH7 329 aa13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 GDPD5Q8WTR4 605 aa13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 VPS35Q96QK1 796 aa13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 HAO1Q9UJM8 370 aa13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 MAFFQ9ULX9 164 aa13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 GPC6Q9Y625 555 aaPredicted RBP13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 NCKAP5LQ9HCH0 1330 aa13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 HARS2P49590 506 aaKnown RBP13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 IL2P60568 153 aa13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 S100A12P80511 92 aa13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 ALG11Q2TAA5 492 aa13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 PPIL6Q8IXY8 311 aa13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 SLC35G2Q8TBE7 412 aa13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 PROX1Q92786 737 aa13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 WDR41Q9HAD4 459 aa13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 WDR35Q9P2L0 1181 aa13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 RUVBL2Q9Y230 463 aaKnown RBP13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 NCF1BA6NI72 391 aaPredicted RBP13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 NCF1CA8MVU1 366 aaPredicted RBP13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 OR6A2O95222 327 aa13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 CHRNGP07510 517 aa13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 NCF1P14598 390 aaPredicted RBP13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 ZW10O43264 779 aa13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 GSSP48637 474 aa13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 KYQ8NBH2 561 aa13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 COA7Q96BR5 231 aa13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 DGCR14Q96DF8 476 aaKnown RBP13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 CITED4Q96RK1 184 aa13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 N6AMT1Q9Y5N5 214 aa13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 NME5P56597 212 aa13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 EFHC1Q5JVL4 640 aa13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 FRMD5Q7Z6J6 570 aa13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 LRRC1Q9BTT6 524 aa13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 PCDHB6Q9Y5E3 794 aa13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 MAGEA4P43358 317 aa13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 RGS1Q08116 209 aa13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 PTGISQ16647 500 aa13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 UBE2SQ16763 222 aa13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 NAPEPLDQ6IQ20 393 aa13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 TXNDC11Q6PKC3 985 aa13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 CXXC5Q7LFL8 322 aaKnown RBP13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 SLC22A9Q8IVM8 553 aa13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 CRELD1Q96HD1 420 aa13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 Q96MT0 163 aa13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 RHOBTB2Q9BYZ6 727 aa13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 ADAM33Q9BZ11 813 aa13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 GPN1Q9HCN4 374 aaPredicted RBP13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 SRP68Q9UHB9 627 aaKnown RBP13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 NUP50Q9UKX7 468 aa13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 SNX12Q9UMY4 172 aa13.72□□□□□ -0.21
CCDC88A-204ENST00000413716 A0A087WXM4 84 aa13.71□□□□□ -0.21
CCDC88A-204ENST00000413716 GSAPA4D1B5 854 aa13.71□□□□□ -0.21
CCDC88A-204ENST00000413716 PTGES3LE9PB15 166 aa13.71□□□□□ -0.21
CCDC88A-204ENST00000413716 UMPSP11172 480 aa13.71□□□□□ -0.21
CCDC88A-204ENST00000413716 CLVS1Q8IUQ0 354 aaPredicted RBP13.71□□□□□ -0.21
CCDC88A-204ENST00000413716 NSUN7Q8NE18 718 aaKnown RBP13.71□□□□□ -0.21
CCDC88A-204ENST00000413716 FICDQ9BVA6 458 aa13.71□□□□□ -0.21
CCDC88A-204ENST00000413716 SHCBP1LQ9BZQ2 653 aa13.71□□□□□ -0.21
CCDC88A-204ENST00000413716 TRIM2Q9C040 744 aa13.71□□□□□ -0.21
CCDC88A-204ENST00000413716 G3V2T6 193 aa13.71□□□□□ -0.21
CCDC88A-204ENST00000413716 EIF2AK2P19525 551 aaKnown RBP13.71□□□□□ -0.21
CCDC88A-204ENST00000413716 PSME3P61289 254 aa13.71□□□□□ -0.21
CCDC88A-204ENST00000413716 TTLL4Q14679 1199 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms