RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 H7C0C1 242 aa13.22□□□□□ -0.29
SHMT1-205ENST00000395684 PIK3R2O00459 728 aa13.22□□□□□ -0.29
SHMT1-205ENST00000395684 B4GALT5O43286 388 aa13.22□□□□□ -0.29
SHMT1-205ENST00000395684 B4GALT4O60513 344 aa13.22□□□□□ -0.29
SHMT1-205ENST00000395684 RFPL1O75677 317 aa13.22□□□□□ -0.29
SHMT1-205ENST00000395684 MICAL2O94851 1124 aa13.22□□□□□ -0.29
SHMT1-205ENST00000395684 MAP3K6O95382 1288 aa13.22□□□□□ -0.29
SHMT1-205ENST00000395684 TNNC2P02585 160 aa13.22□□□□□ -0.29
SHMT1-205ENST00000395684 DPEP1P16444 411 aa13.22□□□□□ -0.29
SHMT1-205ENST00000395684 GPD2P43304 727 aa13.22□□□□□ -0.29
SHMT1-205ENST00000395684 ATP5OP48047 213 aa13.22□□□□□ -0.29
SHMT1-205ENST00000395684 C15orf59Q2T9L4 293 aaPredicted RBP13.22□□□□□ -0.29
SHMT1-205ENST00000395684 FAM102AQ5T9C2 384 aaPredicted RBP13.22□□□□□ -0.29
SHMT1-205ENST00000395684 PDCD7Q8N8D1 485 aaKnown RBP13.22□□□□□ -0.29
SHMT1-205ENST00000395684 ANKRD36BP1Q96IX9 119 aa13.22□□□□□ -0.29
SHMT1-205ENST00000395684 TRIM56Q9BRZ2 755 aaKnown RBP13.22□□□□□ -0.29
SHMT1-205ENST00000395684 SLC13A1Q9BZW2 595 aa13.22□□□□□ -0.29
SHMT1-205ENST00000395684 PDGFDQ9GZP0 370 aaPredicted RBP13.22□□□□□ -0.29
SHMT1-205ENST00000395684 POPDC2Q9HBU9 364 aa13.22□□□□□ -0.29
SHMT1-205ENST00000395684 PTPRHQ9HD43 1115 aa13.22□□□□□ -0.29
SHMT1-205ENST00000395684 LRCH1Q9Y2L9 728 aa13.22□□□□□ -0.29
SHMT1-205ENST00000395684 WASF2Q9Y6W5 498 aa13.22□□□□□ -0.29
SHMT1-205ENST00000395684 H3BRJ5 948 aa13.21□□□□□ -0.29
SHMT1-205ENST00000395684 KCNN4O15554 427 aa13.21□□□□□ -0.29
SHMT1-205ENST00000395684 SNRPAP09012 282 aaKnown RBP13.21□□□□□ -0.29
SHMT1-205ENST00000395684 PROZP22891 400 aa13.21□□□□□ -0.29
SHMT1-205ENST00000395684 IL4RP24394 825 aa13.21□□□□□ -0.29
SHMT1-205ENST00000395684 TCF7P36402 384 aaPredicted RBP13.21□□□□□ -0.29
SHMT1-205ENST00000395684 GABRB2P47870 512 aa13.21□□□□□ -0.29
SHMT1-205ENST00000395684 ZNF143P52747 638 aaPredicted RBP13.21□□□□□ -0.29
SHMT1-205ENST00000395684 PTPN11Q06124 597 aaPredicted RBP13.21□□□□□ -0.29
SHMT1-205ENST00000395684 BMPR2Q13873 1038 aa13.21□□□□□ -0.29
SHMT1-205ENST00000395684 RCN2Q14257 317 aa13.21□□□□□ -0.29
SHMT1-205ENST00000395684 ACAP1Q15027 740 aa13.21□□□□□ -0.29
SHMT1-205ENST00000395684 ZNF667Q5HYK9 610 aa13.21□□□□□ -0.29
SHMT1-205ENST00000395684 EEF1DP3Q658K8 133 aa13.21□□□□□ -0.29
SHMT1-205ENST00000395684 IRGCQ6NXR0 463 aa13.21□□□□□ -0.29
SHMT1-205ENST00000395684 ARID3BQ8IVW6 561 aaPredicted RBP13.21□□□□□ -0.29
SHMT1-205ENST00000395684 PIWIL1Q96J94 861 aaKnown RBP13.21□□□□□ -0.29
SHMT1-205ENST00000395684 C12orf42Q96LP6 360 aa13.21□□□□□ -0.29
SHMT1-205ENST00000395684 WRNIP1Q96S55 665 aa13.21□□□□□ -0.29
SHMT1-205ENST00000395684 ADPGKQ9BRR6 497 aa13.21□□□□□ -0.29
SHMT1-205ENST00000395684 C20orf27Q9GZN8 174 aa13.21□□□□□ -0.29
SHMT1-205ENST00000395684 AS3MTQ9HBK9 375 aa13.21□□□□□ -0.29
SHMT1-205ENST00000395684 KRT82Q9NSB4 513 aa13.21□□□□□ -0.29
SHMT1-205ENST00000395684 ASNSD1Q9NWL6 643 aa13.21□□□□□ -0.29
SHMT1-205ENST00000395684 KCNK4Q9NYG8 393 aa13.21□□□□□ -0.29
SHMT1-205ENST00000395684 DLGAP2Q9P1A6 1054 aa13.21□□□□□ -0.29
SHMT1-205ENST00000395684 ZC3H7BQ9UGR2 993 aaKnown RBP13.21□□□□□ -0.29
SHMT1-205ENST00000395684 HACL1Q9UJ83 578 aa13.21□□□□□ -0.29
SHMT1-205ENST00000395684 SPDYE16A6NNV3 312 aaPredicted RBP13.21□□□□□ -0.3
SHMT1-205ENST00000395684 ENO1P06733 434 aaKnown RBP13.21□□□□□ -0.3
SHMT1-205ENST00000395684 GJB1P08034 283 aa13.21□□□□□ -0.3
SHMT1-205ENST00000395684 CXCL8P10145 99 aa13.21□□□□□ -0.3
SHMT1-205ENST00000395684 SP100P23497 879 aaPredicted RBP13.21□□□□□ -0.3
SHMT1-205ENST00000395684 RBL1P28749 1068 aa13.21□□□□□ -0.3
SHMT1-205ENST00000395684 RAP1GDS1P52306 607 aa13.21□□□□□ -0.3
SHMT1-205ENST00000395684 MXRA7P84157 204 aa13.21□□□□□ -0.3
SHMT1-205ENST00000395684 TMPRSS15P98073 1019 aa13.21□□□□□ -0.3
SHMT1-205ENST00000395684 MDH1BQ5I0G3 518 aa13.21□□□□□ -0.3
SHMT1-205ENST00000395684 ANGEL2Q5VTE6 544 aaKnown RBP13.21□□□□□ -0.3
SHMT1-205ENST00000395684 IER5Q5VY09 327 aa13.21□□□□□ -0.3
SHMT1-205ENST00000395684 DEFB132Q7Z7B7 95 aa13.21□□□□□ -0.3
SHMT1-205ENST00000395684 KBTBD2Q8IY47 623 aa13.21□□□□□ -0.3
SHMT1-205ENST00000395684 PLD5Q8N7P1 536 aa13.21□□□□□ -0.3
SHMT1-205ENST00000395684 C1orf127Q8N9H9 656 aa13.21□□□□□ -0.3
SHMT1-205ENST00000395684 RBM15BQ8NDT2 890 aaKnown RBP13.21□□□□□ -0.3
SHMT1-205ENST00000395684 UBA3Q8TBC4 463 aa13.21□□□□□ -0.3
SHMT1-205ENST00000395684 STMN2Q93045 179 aa13.21□□□□□ -0.3
SHMT1-205ENST00000395684 E2F7Q96AV8 911 aa13.21□□□□□ -0.3
SHMT1-205ENST00000395684 C7orf26Q96N11 449 aa13.21□□□□□ -0.3
SHMT1-205ENST00000395684 RNF157Q96PX1 679 aa13.21□□□□□ -0.3
SHMT1-205ENST00000395684 MARCOQ9UEW3 520 aaPredicted RBP13.21□□□□□ -0.3
SHMT1-205ENST00000395684 PPME1Q9Y570 386 aa13.21□□□□□ -0.3
SHMT1-205ENST00000395684 PHIPQ8WWQ0 1821 aa13.21□□□□□ -0.3
SHMT1-205ENST00000395684 CCDC195A0A1B0GUA6 201 aa13.2□□□□□ -0.3
SHMT1-205ENST00000395684 M0QYV0 167 aa13.2□□□□□ -0.3
SHMT1-205ENST00000395684 KRT37O76014 449 aa13.2□□□□□ -0.3
SHMT1-205ENST00000395684 NPTXRO95502 500 aa13.2□□□□□ -0.3
SHMT1-205ENST00000395684 KITP10721 976 aa13.2□□□□□ -0.3
SHMT1-205ENST00000395684 PRKCHP24723 683 aa13.2□□□□□ -0.3
SHMT1-205ENST00000395684 ZNF280AP59817 542 aaPredicted RBP13.2□□□□□ -0.3
SHMT1-205ENST00000395684 AP1B1Q10567 949 aa13.2□□□□□ -0.3
SHMT1-205ENST00000395684 CBLBQ13191 982 aa13.2□□□□□ -0.3
SHMT1-205ENST00000395684 CHI3L2Q15782 390 aa13.2□□□□□ -0.3
SHMT1-205ENST00000395684 CDO1Q16878 200 aa13.2□□□□□ -0.3
SHMT1-205ENST00000395684 THEMIS2Q5TEJ8 643 aa13.2□□□□□ -0.3
SHMT1-205ENST00000395684 WDR78Q5VTH9 848 aa13.2□□□□□ -0.3
SHMT1-205ENST00000395684 MPZL3Q6UWV2 235 aa13.2□□□□□ -0.3
SHMT1-205ENST00000395684 TSHZ1Q6ZSZ6 1077 aa13.2□□□□□ -0.3
SHMT1-205ENST00000395684 TMPRSS6Q8IU80 811 aa13.2□□□□□ -0.3
SHMT1-205ENST00000395684 DNERQ8NFT8 737 aa13.2□□□□□ -0.3
SHMT1-205ENST00000395684 RXFP2Q8WXD0 754 aa13.2□□□□□ -0.3
SHMT1-205ENST00000395684 FAM161BQ96MY7 647 aa13.2□□□□□ -0.3
SHMT1-205ENST00000395684 ACAP3Q96P50 834 aa13.2□□□□□ -0.3
SHMT1-205ENST00000395684 VPS33BQ9H267 617 aa13.2□□□□□ -0.3
SHMT1-205ENST00000395684 PICK1Q9NRD5 415 aa13.2□□□□□ -0.3
SHMT1-205ENST00000395684 SIRPGQ9P1W8 387 aa13.2□□□□□ -0.3
SHMT1-205ENST00000395684 PAK5Q9P286 719 aa13.2□□□□□ -0.3
SHMT1-205ENST00000395684 PPARGC1AQ9UBK2 798 aaKnown RBP13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms