RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 HTR7P34969 479 aa7.37□□□□□ -1.23
LIMA1-202ENST00000394943 CCZ1BP86790 482 aa7.37□□□□□ -1.23
LIMA1-202ENST00000394943 CCZ1P86791 482 aaPredicted RBP7.37□□□□□ -1.23
LIMA1-202ENST00000394943 LRMPQ12912 555 aa7.37□□□□□ -1.23
LIMA1-202ENST00000394943 GSE1Q14687 1217 aa7.37□□□□□ -1.23
LIMA1-202ENST00000394943 HSP90AA4PQ58FG1 418 aa7.37□□□□□ -1.23
LIMA1-202ENST00000394943 LIN9Q5TKA1 542 aa7.37□□□□□ -1.23
LIMA1-202ENST00000394943 TRNP1Q6NT89 227 aa7.37□□□□□ -1.23
LIMA1-202ENST00000394943 NPAS3Q8IXF0 933 aa7.37□□□□□ -1.23
LIMA1-202ENST00000394943 CCDC112Q8NEF3 446 aa7.37□□□□□ -1.23
LIMA1-202ENST00000394943 PLD4Q96BZ4 506 aa7.37□□□□□ -1.23
LIMA1-202ENST00000394943 OTUB2Q96DC9 234 aa7.37□□□□□ -1.23
LIMA1-202ENST00000394943 PRMT1Q99873 361 aaKnown RBP7.37□□□□□ -1.23
LIMA1-202ENST00000394943 CYP4F11Q9HBI6 524 aa7.37□□□□□ -1.23
LIMA1-202ENST00000394943 NR2E1Q9Y466 385 aa7.37□□□□□ -1.23
LIMA1-202ENST00000394943 TICRRQ7Z2Z1 1910 aa7.37□□□□□ -1.23
LIMA1-202ENST00000394943 GOLGA6L3A6NEY3 463 aa7.37□□□□□ -1.23
LIMA1-202ENST00000394943 C2CD4BA6NLJ0 364 aa7.37□□□□□ -1.23
LIMA1-202ENST00000394943 THAP12O43422 761 aa7.37□□□□□ -1.23
LIMA1-202ENST00000394943 LRG1P02750 347 aa7.37□□□□□ -1.23
LIMA1-202ENST00000394943 KRT9P35527 623 aa7.37□□□□□ -1.23
LIMA1-202ENST00000394943 ARHGAP25P42331 645 aa7.37□□□□□ -1.23
LIMA1-202ENST00000394943 KPNA1P52294 538 aaPredicted RBP7.37□□□□□ -1.23
LIMA1-202ENST00000394943 ZP2Q05996 745 aa7.37□□□□□ -1.23
LIMA1-202ENST00000394943 TAZQ16635 292 aa7.37□□□□□ -1.23
LIMA1-202ENST00000394943 AAK1Q2M2I8 961 aa7.37□□□□□ -1.23
LIMA1-202ENST00000394943 EFHC1Q5JVL4 640 aa7.37□□□□□ -1.23
LIMA1-202ENST00000394943 MANEALQ5VSG8 457 aa7.37□□□□□ -1.23
LIMA1-202ENST00000394943 CYP4V2Q6ZWL3 525 aaPredicted RBP7.37□□□□□ -1.23
LIMA1-202ENST00000394943 STRADAQ7RTN6 431 aa7.37□□□□□ -1.23
LIMA1-202ENST00000394943 SLFN11Q7Z7L1 901 aa7.37□□□□□ -1.23
LIMA1-202ENST00000394943 PALB2Q86YC2 1186 aa7.37□□□□□ -1.23
LIMA1-202ENST00000394943 PLCD3Q8N3E9 789 aa7.37□□□□□ -1.23
LIMA1-202ENST00000394943 NTAN1Q96AB6 310 aa7.37□□□□□ -1.23
LIMA1-202ENST00000394943 ASB2Q96Q27 587 aa7.37□□□□□ -1.23
LIMA1-202ENST00000394943 NCAPGQ9BPX3 1015 aa7.37□□□□□ -1.23
LIMA1-202ENST00000394943 FAM50BQ9Y247 325 aa7.37□□□□□ -1.23
LIMA1-202ENST00000394943 ZNF510Q9Y2H8 683 aa7.37□□□□□ -1.23
LIMA1-202ENST00000394943 REXO2Q9Y3B8 237 aaKnown RBP7.37□□□□□ -1.23
LIMA1-202ENST00000394943 IGLV3-10A0A075B6K4 115 aa7.37□□□□□ -1.23
LIMA1-202ENST00000394943 ANKRD62A6NC57 917 aa7.37□□□□□ -1.23
LIMA1-202ENST00000394943 HSF2BPO75031 334 aa7.37□□□□□ -1.23
LIMA1-202ENST00000394943 ARSEP51690 589 aa7.37□□□□□ -1.23
LIMA1-202ENST00000394943 VEPH1Q14D04 833 aa7.37□□□□□ -1.23
LIMA1-202ENST00000394943 MAMSTRQ6ZN01 415 aa7.37□□□□□ -1.23
LIMA1-202ENST00000394943 TADA2BQ86TJ2 420 aa7.37□□□□□ -1.23
LIMA1-202ENST00000394943 ELMOD1Q8N336 334 aa7.37□□□□□ -1.23
LIMA1-202ENST00000394943 FEZF2Q8TBJ5 459 aa7.37□□□□□ -1.23
LIMA1-202ENST00000394943 DNASE1L2Q92874 299 aa7.37□□□□□ -1.23
LIMA1-202ENST00000394943 C1orf74Q96LT6 269 aa7.37□□□□□ -1.23
LIMA1-202ENST00000394943 ZNF512Q96ME7 567 aaPredicted RBP7.37□□□□□ -1.23
LIMA1-202ENST00000394943 POMKQ9H5K3 350 aa7.37□□□□□ -1.23
LIMA1-202ENST00000394943 NMUR1Q9HB89 426 aa7.37□□□□□ -1.23
LIMA1-202ENST00000394943 ASAH2Q9NR71 780 aa7.37□□□□□ -1.23
LIMA1-202ENST00000394943 TLR8Q9NR97 1041 aaKnown RBP7.37□□□□□ -1.23
LIMA1-202ENST00000394943 HESX1Q9UBX0 185 aa7.37□□□□□ -1.23
LIMA1-202ENST00000394943 TCF20Q9UGU0 1960 aaKnown RBP7.36□□□□□ -1.23
LIMA1-202ENST00000394943 TMEM191CA6NGB0 347 aa7.36□□□□□ -1.23
LIMA1-202ENST00000394943 SHISA7A6NL88 538 aa7.36□□□□□ -1.23
LIMA1-202ENST00000394943 PER2O15055 1255 aa7.36□□□□□ -1.23
LIMA1-202ENST00000394943 MAP3K7CLP57077 242 aa7.36□□□□□ -1.23
LIMA1-202ENST00000394943 SEMA3BQ13214 749 aa7.36□□□□□ -1.23
LIMA1-202ENST00000394943 PPP2R5DQ14738 602 aa7.36□□□□□ -1.23
LIMA1-202ENST00000394943 ARHGAP44Q17R89 818 aa7.36□□□□□ -1.23
LIMA1-202ENST00000394943 GAB4Q2WGN9 574 aa7.36□□□□□ -1.23
LIMA1-202ENST00000394943 HS1BP3Q53T59 392 aa7.36□□□□□ -1.23
LIMA1-202ENST00000394943 MTSS1LQ765P7 747 aa7.36□□□□□ -1.23
LIMA1-202ENST00000394943 DEPDC1BQ8WUY9 529 aa7.36□□□□□ -1.23
LIMA1-202ENST00000394943 SPAG5Q96R06 1193 aa7.36□□□□□ -1.23
LIMA1-202ENST00000394943 NHEJ1Q9H9Q4 299 aaPredicted RBP7.36□□□□□ -1.23
LIMA1-202ENST00000394943 ABI2Q9NYB9 513 aaPredicted RBP7.36□□□□□ -1.23
LIMA1-202ENST00000394943 IGSF9Q9P2J2 1179 aa7.36□□□□□ -1.23
LIMA1-202ENST00000394943 THEGQ9P2T0 379 aa7.36□□□□□ -1.23
LIMA1-202ENST00000394943 UVRAGQ9P2Y5 699 aa7.36□□□□□ -1.23
LIMA1-202ENST00000394943 TLR6Q9Y2C9 796 aa7.36□□□□□ -1.23
LIMA1-202ENST00000394943 WASH4PA8MWX3 477 aa7.36□□□□□ -1.23
LIMA1-202ENST00000394943 C10orf142B7Z368 130 aa7.36□□□□□ -1.23
LIMA1-202ENST00000394943 M0QYV0 167 aa7.36□□□□□ -1.23
LIMA1-202ENST00000394943 RFPL2O75678 378 aa7.36□□□□□ -1.23
LIMA1-202ENST00000394943 PNMA6AP0CW24 399 aaPredicted RBP7.36□□□□□ -1.23
LIMA1-202ENST00000394943 LAMP2P13473 410 aa7.36□□□□□ -1.23
LIMA1-202ENST00000394943 FSHRP23945 695 aa7.36□□□□□ -1.23
LIMA1-202ENST00000394943 ELF1P32519 619 aa7.36□□□□□ -1.23
LIMA1-202ENST00000394943 MATKP42679 507 aa7.36□□□□□ -1.23
LIMA1-202ENST00000394943 PGFP49763 221 aa7.36□□□□□ -1.23
LIMA1-202ENST00000394943 ZNF135P52742 658 aaPredicted RBP7.36□□□□□ -1.23
LIMA1-202ENST00000394943 DDR2Q16832 855 aa7.36□□□□□ -1.23
LIMA1-202ENST00000394943 FAM183BPQ6ZVS7 135 aa7.36□□□□□ -1.23
LIMA1-202ENST00000394943 HS6ST3Q8IZP7 471 aa7.36□□□□□ -1.23
LIMA1-202ENST00000394943 CMTM8Q8IZV2 173 aa7.36□□□□□ -1.23
LIMA1-202ENST00000394943 DDX51Q8N8A6 666 aaKnown RBP eCLIP7.36□□□□□ -1.23
LIMA1-202ENST00000394943 RNF214Q8ND24 703 aa7.36□□□□□ -1.23
LIMA1-202ENST00000394943 TRIM5Q9C035 493 aa7.36□□□□□ -1.23
LIMA1-202ENST00000394943 PRDM16Q9HAZ2 1276 aa7.36□□□□□ -1.23
LIMA1-202ENST00000394943 POPDC2Q9HBU9 364 aa7.36□□□□□ -1.23
LIMA1-202ENST00000394943 ACP6Q9NPH0 428 aa7.36□□□□□ -1.23
LIMA1-202ENST00000394943 ZNHIT6Q9NWK9 470 aaKnown RBP7.36□□□□□ -1.23
LIMA1-202ENST00000394943 MTUS1Q9ULD2 1270 aa7.36□□□□□ -1.23
LIMA1-202ENST00000394943 MYH10P35580 1976 aa7.36□□□□□ -1.23
LIMA1-202ENST00000394943 A0A087X0T9 212 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms