RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 OTOP2Q7RTS6 562 aa14.75□□□□□ -0.05
SS18-201ENST00000269137 BHLHA9Q7RTU4 235 aa14.75□□□□□ -0.05
SS18-201ENST00000269137 BNIPLQ7Z465 357 aa14.75□□□□□ -0.05
SS18-201ENST00000269137 TMCO2Q7Z6W1 182 aaPredicted RBP14.75□□□□□ -0.05
SS18-201ENST00000269137 SLC39A11Q8N1S5 342 aa14.75□□□□□ -0.05
SS18-201ENST00000269137 C12orf50Q8NA57 414 aaPredicted RBP14.75□□□□□ -0.05
SS18-201ENST00000269137 CCDC26Q8TAB7 109 aa14.75□□□□□ -0.05
SS18-201ENST00000269137 HDAC7Q8WUI4 952 aa14.75□□□□□ -0.05
SS18-201ENST00000269137 TEKT4Q8WW24 435 aa14.75□□□□□ -0.05
SS18-201ENST00000269137 PIK3R5Q8WYR1 880 aa14.75□□□□□ -0.05
SS18-201ENST00000269137 RNF25Q96BH1 459 aaPredicted RBP14.75□□□□□ -0.05
SS18-201ENST00000269137 C8orf48Q96LL4 319 aa14.75□□□□□ -0.05
SS18-201ENST00000269137 PEBP4Q96S96 227 aa14.75□□□□□ -0.05
SS18-201ENST00000269137 VN1R3Q9BXE9 311 aa14.75□□□□□ -0.05
SS18-201ENST00000269137 ZWILCHQ9H900 591 aa14.75□□□□□ -0.05
SS18-201ENST00000269137 NGRNQ9NPE2 291 aaKnown RBP14.75□□□□□ -0.05
SS18-201ENST00000269137 ABI2Q9NYB9 513 aaPredicted RBP14.75□□□□□ -0.05
SS18-201ENST00000269137 STIM2Q9P246 746 aa14.75□□□□□ -0.05
SS18-201ENST00000269137 BACE2Q9Y5Z0 518 aa14.75□□□□□ -0.05
SS18-201ENST00000269137 MRPL42Q9Y6G3 142 aaKnown RBP14.75□□□□□ -0.05
SS18-201ENST00000269137 LRRD1A4D1F6 860 aa14.74□□□□□ -0.05
SS18-201ENST00000269137 YJEFN3A6XGL0 299 aa14.74□□□□□ -0.05
SS18-201ENST00000269137 E7ENQ6 273 aa14.74□□□□□ -0.05
SS18-201ENST00000269137 RAD51CO43502 376 aa14.74□□□□□ -0.05
SS18-201ENST00000269137 KDELR1P24390 212 aa14.74□□□□□ -0.05
SS18-201ENST00000269137 CDKN2BP42772 138 aa14.74□□□□□ -0.05
SS18-201ENST00000269137 TFDP3Q5H9I0 405 aa14.74□□□□□ -0.05
SS18-201ENST00000269137 SPOUT1Q5T280 376 aaKnown RBP14.74□□□□□ -0.05
SS18-201ENST00000269137 ZFYVE27Q5T4F4 411 aa14.74□□□□□ -0.05
SS18-201ENST00000269137 FAM117BQ6P1L5 589 aa14.74□□□□□ -0.05
SS18-201ENST00000269137 FBXO38Q6PIJ6 1188 aa14.74□□□□□ -0.05
SS18-201ENST00000269137 RSPO2Q6UXX9 243 aaPredicted RBP14.74□□□□□ -0.05
SS18-201ENST00000269137 ZNF365Q70YC5 407 aa14.74□□□□□ -0.05
SS18-201ENST00000269137 BEND5Q7L4P6 421 aa14.74□□□□□ -0.05
SS18-201ENST00000269137 MAATS1Q7Z4T9 603 aa14.74□□□□□ -0.05
SS18-201ENST00000269137 ANKS1BQ7Z6G8 1248 aa14.74□□□□□ -0.05
SS18-201ENST00000269137 C2orf15Q8WU43 125 aaKnown RBP14.74□□□□□ -0.05
SS18-201ENST00000269137 BADQ92934 168 aa14.74□□□□□ -0.05
SS18-201ENST00000269137 NPY6RQ99463 290 aa14.74□□□□□ -0.05
SS18-201ENST00000269137 HERPUD2Q9BSE4 406 aa14.74□□□□□ -0.05
SS18-201ENST00000269137 LRRC19Q9H756 370 aa14.74□□□□□ -0.05
SS18-201ENST00000269137 HOMER3Q9NSC5 361 aa14.74□□□□□ -0.05
SS18-201ENST00000269137 KLHL11Q9NVR0 708 aa14.74□□□□□ -0.05
SS18-201ENST00000269137 ARGLU1Q9NWB6 273 aaPredicted RBP14.74□□□□□ -0.05
SS18-201ENST00000269137 RRN3Q9NYV6 651 aa14.74□□□□□ -0.05
SS18-201ENST00000269137 MTRRQ9UBK8 725 aa14.74□□□□□ -0.05
SS18-201ENST00000269137 DMGDHQ9UI17 866 aaKnown RBP14.74□□□□□ -0.05
SS18-201ENST00000269137 STAP1Q9ULZ2 295 aa14.74□□□□□ -0.05
SS18-201ENST00000269137 CCDC151A5D8V7 595 aa14.73□□□□□ -0.05
SS18-201ENST00000269137 PI4K2BG5E9Z4 385 aa14.73□□□□□ -0.05
SS18-201ENST00000269137 TRIM66O15016 1216 aa14.73□□□□□ -0.05
SS18-201ENST00000269137 TJP3O95049 919 aa14.73□□□□□ -0.05
SS18-201ENST00000269137 LTFP02788 710 aa14.73□□□□□ -0.05
SS18-201ENST00000269137 SOD2P04179 222 aa14.73□□□□□ -0.05
SS18-201ENST00000269137 FYNP06241 537 aa14.73□□□□□ -0.05
SS18-201ENST00000269137 TFE3P19532 575 aaPredicted RBP14.73□□□□□ -0.05
SS18-201ENST00000269137 SMTNL2Q2TAL5 461 aa14.73□□□□□ -0.05
SS18-201ENST00000269137 RAB6CQ53S08 254 aa14.73□□□□□ -0.05
SS18-201ENST00000269137 DCAF6Q58WW2 860 aa14.73□□□□□ -0.05
SS18-201ENST00000269137 KCNT1Q5JUK3 1230 aa14.73□□□□□ -0.05
SS18-201ENST00000269137 SLC8B1Q6J4K2 584 aa14.73□□□□□ -0.05
SS18-201ENST00000269137 HFE2Q6ZVN8 426 aa14.73□□□□□ -0.05
SS18-201ENST00000269137 COLGALT1Q8NBJ5 622 aa14.73□□□□□ -0.05
SS18-201ENST00000269137 SPPL2BQ8TCT7 592 aa14.73□□□□□ -0.05
SS18-201ENST00000269137 MAGOHBQ96A72 148 aaKnown RBP14.73□□□□□ -0.05
SS18-201ENST00000269137 RUNDC3BQ96NL0 473 aa14.73□□□□□ -0.05
SS18-201ENST00000269137 YME1L1Q96TA2 773 aa14.73□□□□□ -0.05
SS18-201ENST00000269137 TRIM62Q9BVG3 475 aa14.73□□□□□ -0.05
SS18-201ENST00000269137 HEMGNQ9BXL5 484 aa14.73□□□□□ -0.05
SS18-201ENST00000269137 ADAM33Q9BZ11 813 aa14.73□□□□□ -0.05
SS18-201ENST00000269137 RAB6CQ9H0N0 254 aa14.73□□□□□ -0.05
SS18-201ENST00000269137 SPG21Q9NZD8 308 aa14.73□□□□□ -0.05
SS18-201ENST00000269137 PCYOX1Q9UHG3 505 aa14.73□□□□□ -0.05
SS18-201ENST00000269137 PTPRSQ13332 1948 aa14.73□□□□□ -0.05
SS18-201ENST00000269137 hCG_1818297A0A087WSY0 165 aa14.73□□□□□ -0.05
SS18-201ENST00000269137 MDM4O15151 490 aa14.73□□□□□ -0.05
SS18-201ENST00000269137 GJB5O95377 273 aa14.73□□□□□ -0.05
SS18-201ENST00000269137 FNTAP49354 379 aa14.73□□□□□ -0.05
SS18-201ENST00000269137 ARSEP51690 589 aa14.73□□□□□ -0.05
SS18-201ENST00000269137 VSNL1P62760 191 aa14.73□□□□□ -0.05
SS18-201ENST00000269137 HTRA4P83105 476 aaPredicted RBP14.73□□□□□ -0.05
SS18-201ENST00000269137 PSRC1Q6PGN9 363 aaPredicted RBP14.73□□□□□ -0.05
SS18-201ENST00000269137 VSIG1Q86XK7 387 aa14.73□□□□□ -0.05
SS18-201ENST00000269137 ATAD1Q8NBU5 361 aa14.73□□□□□ -0.05
SS18-201ENST00000269137 KCTD6Q8NC69 237 aa14.73□□□□□ -0.05
SS18-201ENST00000269137 ACSF2Q96CM8 615 aaPredicted RBP14.73□□□□□ -0.05
SS18-201ENST00000269137 TMEM169Q96HH4 297 aa14.73□□□□□ -0.05
SS18-201ENST00000269137 AMACRQ9UHK6 382 aa14.73□□□□□ -0.05
SS18-201ENST00000269137 COL4A4P53420 1690 aaPredicted RBP14.73□□□□□ -0.05
SS18-201ENST00000269137 MTMR11A4FU01 709 aa14.72□□□□□ -0.05
SS18-201ENST00000269137 CPB1P15086 417 aa14.72□□□□□ -0.05
SS18-201ENST00000269137 SULT1E1P49888 294 aa14.72□□□□□ -0.05
SS18-201ENST00000269137 SLC5A3P53794 718 aa14.72□□□□□ -0.05
SS18-201ENST00000269137 MRPS25P82663 173 aaKnown RBP14.72□□□□□ -0.05
SS18-201ENST00000269137 SLC7A5Q01650 507 aa14.72□□□□□ -0.05
SS18-201ENST00000269137 DHX34Q14147 1143 aaKnown RBP14.72□□□□□ -0.05
SS18-201ENST00000269137 PDK2Q15119 407 aa14.72□□□□□ -0.05
SS18-201ENST00000269137 LLGL1Q15334 1064 aa14.72□□□□□ -0.05
SS18-201ENST00000269137 PSMD5Q16401 504 aa14.72□□□□□ -0.05
SS18-201ENST00000269137 TMEM240Q5SV17 173 aa14.72□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms