RNA–Protein interactions for RNA: ENST00000211998.9

VCL-201, Transcript of vinculin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VCL, Length 5,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-201ENST00000211998 SGF29Q96ES7 293 aa10.78□□□□□ -0.68
VCL-201ENST00000211998 THUMPD3Q9BV44 507 aaKnown RBP10.78□□□□□ -0.68
VCL-201ENST00000211998 KCND2Q9NZV8 630 aa10.78□□□□□ -0.68
VCL-201ENST00000211998 A0A0U1RQJ8 604 aa10.78□□□□□ -0.68
VCL-201ENST00000211998 EME2A4GXA9 379 aaPredicted RBP10.78□□□□□ -0.68
VCL-201ENST00000211998 C19orf81C9J6K1 198 aa10.78□□□□□ -0.68
VCL-201ENST00000211998 TRIM13O60858 407 aa10.78□□□□□ -0.68
VCL-201ENST00000211998 NME5P56597 212 aa10.78□□□□□ -0.68
VCL-201ENST00000211998 RPL10AP62906 217 aaKnown RBP10.78□□□□□ -0.68
VCL-201ENST00000211998 LIN52Q52LA3 116 aa10.78□□□□□ -0.68
VCL-201ENST00000211998 EGFLAMQ63HQ2 1017 aa10.78□□□□□ -0.68
VCL-201ENST00000211998 TSPAN17Q96FV3 270 aa10.78□□□□□ -0.68
VCL-201ENST00000211998 OTUB1Q96FW1 271 aaPredicted RBP10.78□□□□□ -0.68
VCL-201ENST00000211998 CDRT15Q96T59 188 aa10.78□□□□□ -0.68
VCL-201ENST00000211998 VTA1Q9NP79 307 aa10.78□□□□□ -0.68
VCL-201ENST00000211998 DOLKQ9UPQ8 538 aa10.78□□□□□ -0.68
VCL-201ENST00000211998 USP42Q9H9J4 1324 aaKnown RBP10.78□□□□□ -0.68
VCL-201ENST00000211998 FAM20BO75063 409 aa10.78□□□□□ -0.68
VCL-201ENST00000211998 H2AFYO75367 372 aaKnown RBP10.78□□□□□ -0.68
VCL-201ENST00000211998 CSPG5O95196 566 aa10.78□□□□□ -0.68
VCL-201ENST00000211998 ME2P23368 584 aa10.78□□□□□ -0.68
VCL-201ENST00000211998 CCDC153Q494R4 210 aa10.78□□□□□ -0.68
VCL-201ENST00000211998 KCNT1Q5JUK3 1230 aa10.78□□□□□ -0.68
VCL-201ENST00000211998 C11orf63Q6NUN7 778 aa10.78□□□□□ -0.68
VCL-201ENST00000211998 RIPOR1Q6ZS17 1223 aa10.78□□□□□ -0.68
VCL-201ENST00000211998 SH3BP5LQ7L8J4 393 aa10.78□□□□□ -0.68
VCL-201ENST00000211998 SCFD1Q8WVM8 642 aa10.78□□□□□ -0.68
VCL-201ENST00000211998 HDHD2Q9H0R4 259 aa10.78□□□□□ -0.68
VCL-201ENST00000211998 NRDE2Q9H7Z3 1164 aa10.78□□□□□ -0.68
VCL-201ENST00000211998 MATN2O00339 956 aa10.77□□□□□ -0.68
VCL-201ENST00000211998 ENTPD3O75355 529 aa10.77□□□□□ -0.68
VCL-201ENST00000211998 FGFR3P22607 806 aa10.77□□□□□ -0.68
VCL-201ENST00000211998 LRRC74AQ0VAA2 488 aa10.77□□□□□ -0.68
VCL-201ENST00000211998 KIZQ2M2Z5 673 aa10.77□□□□□ -0.68
VCL-201ENST00000211998 KDELC2Q7Z4H8 507 aa10.77□□□□□ -0.68
VCL-201ENST00000211998 SVOPQ8N4V2 548 aa10.77□□□□□ -0.68
VCL-201ENST00000211998 TDRD5Q8NAT2 981 aaKnown RBP10.77□□□□□ -0.68
VCL-201ENST00000211998 PSMA8Q8TAA3 256 aa10.77□□□□□ -0.68
VCL-201ENST00000211998 NAT14Q8WUY8 206 aa10.77□□□□□ -0.68
VCL-201ENST00000211998 NSUN4Q96CB9 384 aaKnown RBP10.77□□□□□ -0.68
VCL-201ENST00000211998 KIF12Q96FN5 646 aa10.77□□□□□ -0.68
VCL-201ENST00000211998 ZNF512BQ96KM6 892 aaPredicted RBP10.77□□□□□ -0.68
VCL-201ENST00000211998 GJD4Q96KN9 370 aaPredicted RBP10.77□□□□□ -0.68
VCL-201ENST00000211998 CAMSAP3Q9P1Y5 1249 aaPredicted RBP10.77□□□□□ -0.68
VCL-201ENST00000211998 BTN3A3O00478 584 aa10.77□□□□□ -0.69
VCL-201ENST00000211998 TLR2O60603 784 aa10.77□□□□□ -0.69
VCL-201ENST00000211998 DGAT1O75907 488 aa10.77□□□□□ -0.69
VCL-201ENST00000211998 UPP2O95045 317 aa10.77□□□□□ -0.69
VCL-201ENST00000211998 APOA4P06727 396 aa10.77□□□□□ -0.69
VCL-201ENST00000211998 ALOX5P09917 674 aa10.77□□□□□ -0.69
VCL-201ENST00000211998 CCDC166P0CW27 439 aa10.77□□□□□ -0.69
VCL-201ENST00000211998 GSCP56915 257 aaPredicted RBP10.77□□□□□ -0.69
VCL-201ENST00000211998 SPDYCQ5MJ68 293 aa10.77□□□□□ -0.69
VCL-201ENST00000211998 BTBD8Q5XKL5 378 aa10.77□□□□□ -0.69
VCL-201ENST00000211998 THOC7Q6I9Y2 204 aaKnown RBP10.77□□□□□ -0.69
VCL-201ENST00000211998 DHFR2Q86XF0 187 aa10.77□□□□□ -0.69
VCL-201ENST00000211998 HES6Q96HZ4 224 aa10.77□□□□□ -0.69
VCL-201ENST00000211998 OSGEPQ9NPF4 335 aa10.77□□□□□ -0.69
VCL-201ENST00000211998 ZNRF3Q9ULT6 936 aa10.77□□□□□ -0.69
VCL-201ENST00000211998 FLT1P17948 1338 aa10.77□□□□□ -0.69
VCL-201ENST00000211998 PALM2-AKAP2B1ALY0 433 aaPredicted RBP10.77□□□□□ -0.69
VCL-201ENST00000211998 SNAP23O00161 211 aa10.77□□□□□ -0.69
VCL-201ENST00000211998 ZNF609O15014 1411 aa10.77□□□□□ -0.69
VCL-201ENST00000211998 SHBGP04278 402 aa10.77□□□□□ -0.69
VCL-201ENST00000211998 MYBP10242 640 aa10.77□□□□□ -0.69
VCL-201ENST00000211998 YWHABP31946 246 aaKnown RBP10.77□□□□□ -0.69
VCL-201ENST00000211998 STAT5BP51692 787 aa10.77□□□□□ -0.69
VCL-201ENST00000211998 ADAM17P78536 824 aa10.77□□□□□ -0.69
VCL-201ENST00000211998 PKN2Q16513 984 aaKnown RBP10.77□□□□□ -0.69
VCL-201ENST00000211998 XKR3Q5GH77 459 aa10.77□□□□□ -0.69
VCL-201ENST00000211998 GPR107Q5VW38 600 aa10.77□□□□□ -0.69
VCL-201ENST00000211998 NYAP2Q9P242 653 aa10.77□□□□□ -0.69
VCL-201ENST00000211998 KCNH4Q9UQ05 1017 aa10.77□□□□□ -0.69
VCL-201ENST00000211998 RNF17Q9BXT8 1623 aaKnown RBP10.77□□□□□ -0.69
VCL-201ENST00000211998 ADGRA2Q96PE1 1338 aa10.77□□□□□ -0.69
VCL-201ENST00000211998 PRKCBP05771 671 aa10.77□□□□□ -0.69
VCL-201ENST00000211998 DDX5P17844 614 aaKnown RBP10.77□□□□□ -0.69
VCL-201ENST00000211998 SMTNL2Q2TAL5 461 aa10.77□□□□□ -0.69
VCL-201ENST00000211998 LACTB2Q53H82 288 aaPredicted RBP10.77□□□□□ -0.69
VCL-201ENST00000211998 CYP2R1Q6VVX0 501 aa10.77□□□□□ -0.69
VCL-201ENST00000211998 SLC26A11Q86WA9 606 aa10.77□□□□□ -0.69
VCL-201ENST00000211998 KCTD17Q8N5Z5 321 aa10.77□□□□□ -0.69
VCL-201ENST00000211998 RTL3Q8N8U3 475 aaKnown RBP10.77□□□□□ -0.69
VCL-201ENST00000211998 IGDCC4Q8TDY8 1250 aa10.77□□□□□ -0.69
VCL-201ENST00000211998 KRT35Q92764 455 aa10.77□□□□□ -0.69
VCL-201ENST00000211998 PLEKHA8Q96JA3 519 aa10.77□□□□□ -0.69
VCL-201ENST00000211998 RPL26L1Q9UNX3 145 aaKnown RBP10.77□□□□□ -0.69
VCL-201ENST00000211998 SPHKAPQ2M3C7 1700 aa10.76□□□□□ -0.69
VCL-201ENST00000211998 PIK3CDO00329 1044 aa10.76□□□□□ -0.69
VCL-201ENST00000211998 ALOX15P16050 662 aaPredicted RBP10.76□□□□□ -0.69
VCL-201ENST00000211998 ADORA2BP29275 332 aa10.76□□□□□ -0.69
VCL-201ENST00000211998 NME3Q13232 169 aa10.76□□□□□ -0.69
VCL-201ENST00000211998 NFYCQ13952 458 aa10.76□□□□□ -0.69
VCL-201ENST00000211998 SPIDRQ14159 915 aa10.76□□□□□ -0.69
VCL-201ENST00000211998 MYBPC2Q14324 1141 aa10.76□□□□□ -0.69
VCL-201ENST00000211998 AARS2Q5JTZ9 985 aaKnown RBP10.76□□□□□ -0.69
VCL-201ENST00000211998 TMEM110Q86TL2 294 aa10.76□□□□□ -0.69
VCL-201ENST00000211998 MREGQ8N565 214 aa10.76□□□□□ -0.69
VCL-201ENST00000211998 RMDN1Q96DB5 314 aa10.76□□□□□ -0.69
VCL-201ENST00000211998 SEPHS2Q99611 448 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms