RNA–Protein interactions for RNA: ENST00000640499.1

VEGFA-231, Transcript of vascular endothelial growth factor A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VEGFA, Length 1,188 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-231ENST00000640499 PRAM1Q96QH2 718 aa38.47■■■■□ 3.75
VEGFA-231ENST00000640499 NBPF8Q3BBV2 869 aa38.45■■■■□ 3.75
VEGFA-231ENST00000640499 CDC42BPGQ6DT37 1551 aa38.42■■■■□ 3.74
VEGFA-231ENST00000640499 TONSLQ96HA7 1378 aa38.42■■■■□ 3.74
VEGFA-231ENST00000640499 BRINP3Q76B58 766 aa38.41■■■■□ 3.74
VEGFA-231ENST00000640499 SAFB2Q14151 953 aaKnown RBP eCLIP38.4■■■■□ 3.74
VEGFA-231ENST00000640499 TRPM1Q7Z4N2 1603 aa38.4■■■■□ 3.74
VEGFA-231ENST00000640499 C1orf167Q5SNV9 1468 aa38.4■■■■□ 3.74
VEGFA-231ENST00000640499 ARHGEF28Q8N1W1 1705 aaKnown RBP38.38■■■■□ 3.74
VEGFA-231ENST00000640499 POGKQ9P215 609 aa38.36■■■■□ 3.73
VEGFA-231ENST00000640499 CLSPNQ9HAW4 1339 aa38.34■■■■□ 3.73
VEGFA-231ENST00000640499 ORAI2Q96SN7 254 aa38.31■■■■□ 3.72
VEGFA-231ENST00000640499 FMN2Q9NZ56 1722 aa38.29■■■■□ 3.72
VEGFA-231ENST00000640499 AHDC1Q5TGY3 1603 aaPredicted RBP38.28■■■■□ 3.72
VEGFA-231ENST00000640499 PHLPP1O60346 1717 aa38.28■■■■□ 3.72
VEGFA-231ENST00000640499 ADGRB2O60241 1585 aa38.27■■■■□ 3.72
VEGFA-231ENST00000640499 NUTM2FA1L443 756 aa38.26■■■■□ 3.72
VEGFA-231ENST00000640499 MINK1Q8N4C8 1332 aaPredicted RBP38.26■■■■□ 3.72
VEGFA-231ENST00000640499 COL16A1Q07092 1604 aaPredicted RBP38.25■■■■□ 3.71
VEGFA-231ENST00000640499 DDX17Q92841 729 aaKnown RBP38.25■■■■□ 3.71
VEGFA-231ENST00000640499 HIRIP3Q9BW71 556 aaPredicted RBP38.25■■■■□ 3.71
VEGFA-231ENST00000640499 CCER1Q8TC90 406 aaPredicted RBP38.24■■■■□ 3.71
VEGFA-231ENST00000640499 NHSL1Q5SYE7 1610 aa38.23■■■■□ 3.71
VEGFA-231ENST00000640499 ROCK2O75116 1388 aaKnown RBP38.22■■■■□ 3.71
VEGFA-231ENST00000640499 GPRASP1Q5JY77 1395 aa38.22■■■■□ 3.71
VEGFA-231ENST00000640499 RGPD8O14715 1765 aaPredicted RBP38.19■■■■□ 3.7
VEGFA-231ENST00000640499 RALGAPBQ86X10 1494 aa38.17■■■■□ 3.7
VEGFA-231ENST00000640499 ESCO1Q5FWF5 840 aa38.17■■■■□ 3.7
VEGFA-231ENST00000640499 USP32Q8NFA0 1604 aa38.16■■■■□ 3.7
VEGFA-231ENST00000640499 WASLO00401 505 aaPredicted RBP38.15■■■■□ 3.7
VEGFA-231ENST00000640499 PRR36Q9H6K5 1346 aa38.12■■■■□ 3.69
VEGFA-231ENST00000640499 TIMELESSQ9UNS1 1208 aa38.12■■■■□ 3.69
VEGFA-231ENST00000640499 CENPJQ9HC77 1338 aaPredicted RBP38.12■■■■□ 3.69
VEGFA-231ENST00000640499 ANKARQ7Z5J8 1434 aa38.08■■■■□ 3.69
VEGFA-231ENST00000640499 SOS2Q07890 1332 aaPredicted RBP38.08■■■■□ 3.69
VEGFA-231ENST00000640499 QRICH2Q9H0J4 1663 aa38.07■■■■□ 3.68
VEGFA-231ENST00000640499 TULP4Q9NRJ4 1543 aa38.07■■■■□ 3.68
VEGFA-231ENST00000640499 FOXO3O43524 673 aa38.06■■■■□ 3.68
VEGFA-231ENST00000640499 CARD11Q9BXL7 1154 aa38.06■■■■□ 3.68
VEGFA-231ENST00000640499 JCADQ9P266 1359 aa38.05■■■■□ 3.68
VEGFA-231ENST00000640499 CDK19Q9BWU1 502 aa38.04■■■■□ 3.68
VEGFA-231ENST00000640499 MED1Q15648 1581 aaPredicted RBP38.02■■■■□ 3.68
VEGFA-231ENST00000640499 PHF8Q9UPP1 1060 aa38.02■■■■□ 3.68
VEGFA-231ENST00000640499 PXDNQ92626 1479 aa38.02■■■■□ 3.68
VEGFA-231ENST00000640499 KIF1AQ12756 1690 aa38.01■■■■□ 3.67
VEGFA-231ENST00000640499 NPHP3Q7Z494 1330 aa37.99■■■■□ 3.67
VEGFA-231ENST00000640499 SHPRHQ149N8 1683 aa37.98■■■■□ 3.67
VEGFA-231ENST00000640499 ATP7BP35670 1465 aa37.98■■■■□ 3.67
VEGFA-231ENST00000640499 XPCQ01831 940 aaPredicted RBP37.98■■■■□ 3.67
VEGFA-231ENST00000640499 LRRC59Q96AG4 307 aaKnown RBP37.98■■■■□ 3.67
VEGFA-231ENST00000640499 EIF3AQ14152 1382 aaKnown RBP37.97■■■■□ 3.67
VEGFA-231ENST00000640499 NUDT16Q96DE0 195 aaKnown RBP37.97■■■■□ 3.67
VEGFA-231ENST00000640499 PMFBP1Q8TBY8 1022 aa37.96■■■■□ 3.67
VEGFA-231ENST00000640499 PNPLA6Q8IY17 1366 aa37.93■■■■□ 3.66
VEGFA-231ENST00000640499 CABP2Q9NPB3 220 aa37.9■■■■□ 3.66
VEGFA-231ENST00000640499 KRT28Q7Z3Y7 464 aa37.89■■■■□ 3.66
VEGFA-231ENST00000640499 TOPAZ1Q8N9V7 1692 aa37.88■■■■□ 3.66
VEGFA-231ENST00000640499 LRP6O75581 1613 aa37.88■■■■□ 3.65
VEGFA-231ENST00000640499 SPATA31A6Q5VVP1 1343 aa37.87■■■■□ 3.65
VEGFA-231ENST00000640499 DISP3Q9P2K9 1392 aa37.87■■■■□ 3.65
VEGFA-231ENST00000640499 SBNO2Q9Y2G9 1366 aa37.86■■■■□ 3.65
VEGFA-231ENST00000640499 SRPK2P78362 688 aaKnown RBP37.85■■■■□ 3.65
VEGFA-231ENST00000640499 CCDC61Q9Y6R9 512 aa37.85■■■■□ 3.65
VEGFA-231ENST00000640499 ITSN1Q15811 1721 aa37.84■■■■□ 3.65
VEGFA-231ENST00000640499 EVC2Q86UK5 1308 aa37.83■■■■□ 3.65
VEGFA-231ENST00000640499 SPATA31A3Q5VYP0 1347 aa37.82■■■■□ 3.64
VEGFA-231ENST00000640499 ST20-MTHFSA0A0A6YYL1 179 aa37.81■■■■□ 3.64
VEGFA-231ENST00000640499 PLEKHG3A1L390 1219 aa37.81■■■■□ 3.64
VEGFA-231ENST00000640499 PSME1Q06323 249 aa37.81■■■■□ 3.64
VEGFA-231ENST00000640499 TESK2Q96S53 571 aa37.8■■■■□ 3.64
VEGFA-231ENST00000640499 COL22A1Q8NFW1 1626 aaPredicted RBP37.79■■■■□ 3.64
VEGFA-231ENST00000640499 TRPM3Q9HCF6 1732 aaPredicted RBP37.78■■■■□ 3.64
VEGFA-231ENST00000640499 SBNO1A3KN83 1393 aa37.77■■■■□ 3.64
VEGFA-231ENST00000640499 POLR3AO14802 1390 aaPredicted RBP37.77■■■■□ 3.64
VEGFA-231ENST00000640499 NUTM2BA6NNL0 878 aaPredicted RBP37.76■■■■□ 3.64
VEGFA-231ENST00000640499 NUTM2EB1AL46 878 aaPredicted RBP37.76■■■■□ 3.64
VEGFA-231ENST00000640499 NUTM2AQ8IVF1 878 aaPredicted RBP37.76■■■■□ 3.64
VEGFA-231ENST00000640499 NGDNQ8NEJ9 315 aaKnown RBP37.76■■■■□ 3.64
VEGFA-231ENST00000640499 RGS17Q9UGC6 210 aaPredicted RBP37.76■■■■□ 3.64
VEGFA-231ENST00000640499 USP47Q96K76 1375 aa37.76■■■■□ 3.64
VEGFA-231ENST00000640499 ACEP12821 1306 aa37.75■■■■□ 3.63
VEGFA-231ENST00000640499 PPIP5K1Q6PFW1 1433 aa37.75■■■■□ 3.63
VEGFA-231ENST00000640499 TNS3Q68CZ2 1445 aa37.72■■■■□ 3.63
VEGFA-231ENST00000640499 CABP1Q9NZU7 370 aa37.72■■■■□ 3.63
VEGFA-231ENST00000640499 ALS2Q96Q42 1657 aa37.67■■■■□ 3.62
VEGFA-231ENST00000640499 PHF23Q9BUL5 403 aaPredicted RBP37.65■■■■□ 3.62
VEGFA-231ENST00000640499 ATAD2Q6PL18 1390 aa37.61■■■■□ 3.61
VEGFA-231ENST00000640499 ILDR2Q71H61 639 aa37.61■■■■□ 3.61
VEGFA-231ENST00000640499 ADAMTS2O95450 1211 aa37.6■■■■□ 3.61
VEGFA-231ENST00000640499 MEX3CQ5U5Q3 659 aaKnown RBP37.6■■■■□ 3.61
VEGFA-231ENST00000640499 ARHGEF10O15013 1369 aa37.59■■■■□ 3.61
VEGFA-231ENST00000640499 LMOD2Q6P5Q4 547 aa37.59■■■■□ 3.61
VEGFA-231ENST00000640499 CABLES1Q8TDN4 633 aa37.59■■■■□ 3.61
VEGFA-231ENST00000640499 PUS7Q96PZ0 661 aaKnown RBP37.58■■■■□ 3.61
VEGFA-231ENST00000640499 PAK3O75914 559 aaPredicted RBP37.57■■■■□ 3.6
VEGFA-231ENST00000640499 SSH2Q76I76 1423 aa37.54■■■■□ 3.6
VEGFA-231ENST00000640499 USP6P35125 1406 aa37.53■■■■□ 3.6
VEGFA-231ENST00000640499 ABCA3Q99758 1704 aa37.53■■■■□ 3.6
VEGFA-231ENST00000640499 PLEKHG5O94827 1062 aa37.53■■■■□ 3.6
VEGFA-231ENST00000640499 POTEAQ6S8J7 498 aa37.53■■■■□ 3.6
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms