RNA–Protein interactions for RNA: ENST00000623985.3

LINC00643-206, long intergenic non-protein coding RNA 643, humanhuman

TSL 1 (best)

Gene LINC00643, Length 864 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-206ENST00000623985 C14orf93Q9H972 538 aaKnown RBP21.7■■□□□ 1.06
LINC00643-206ENST00000623985 TMEM132EQ6IEE7 984 aa21.68■■□□□ 1.06
LINC00643-206ENST00000623985 DHX57Q6P158 1386 aaKnown RBP21.68■■□□□ 1.06
LINC00643-206ENST00000623985 LRP6O75581 1613 aa21.68■■□□□ 1.06
LINC00643-206ENST00000623985 STK26Q9P289 416 aa21.67■■□□□ 1.06
LINC00643-206ENST00000623985 COL22A1Q8NFW1 1626 aaPredicted RBP21.66■■□□□ 1.06
LINC00643-206ENST00000623985 PLEKHH1Q9ULM0 1364 aa21.66■■□□□ 1.06
LINC00643-206ENST00000623985 SPATA31A6Q5VVP1 1343 aa21.66■■□□□ 1.06
LINC00643-206ENST00000623985 CFAP70Q5T0N1 1121 aa21.66■■□□□ 1.06
LINC00643-206ENST00000623985 STAC3Q96MF2 364 aa21.66■■□□□ 1.06
LINC00643-206ENST00000623985 MARF1Q9Y4F3 1742 aaKnown RBP21.66■■□□□ 1.06
LINC00643-206ENST00000623985 DCAF11Q8TEB1 546 aa21.63■■□□□ 1.05
LINC00643-206ENST00000623985 ITSN1Q15811 1721 aa21.63■■□□□ 1.05
LINC00643-206ENST00000623985 USP32Q8NFA0 1604 aa21.62■■□□□ 1.05
LINC00643-206ENST00000623985 WAPLQ7Z5K2 1190 aa21.62■■□□□ 1.05
LINC00643-206ENST00000623985 SIRT1Q96EB6 747 aa21.62■■□□□ 1.05
LINC00643-206ENST00000623985 SOCS7O14512 581 aa21.61■■□□□ 1.05
LINC00643-206ENST00000623985 PXDNQ92626 1479 aa21.58■■□□□ 1.05
LINC00643-206ENST00000623985 ORAI2Q96SN7 254 aa21.58■■□□□ 1.05
LINC00643-206ENST00000623985 KDM2AQ9Y2K7 1162 aa21.58■■□□□ 1.05
LINC00643-206ENST00000623985 PNPLA6Q8IY17 1366 aa21.58■■□□□ 1.04
LINC00643-206ENST00000623985 DDX17Q92841 729 aaKnown RBP21.57■■□□□ 1.04
LINC00643-206ENST00000623985 LRRC59Q96AG4 307 aaKnown RBP21.57■■□□□ 1.04
LINC00643-206ENST00000623985 RGS17Q9UGC6 210 aaPredicted RBP21.57■■□□□ 1.04
LINC00643-206ENST00000623985 SOS2Q07890 1332 aaPredicted RBP21.55■■□□□ 1.04
LINC00643-206ENST00000623985 TRPM1Q7Z4N2 1603 aa21.55■■□□□ 1.04
LINC00643-206ENST00000623985 PRAM1Q96QH2 718 aa21.54■■□□□ 1.04
LINC00643-206ENST00000623985 ABCA3Q99758 1704 aa21.54■■□□□ 1.04
LINC00643-206ENST00000623985 NPHP3Q7Z494 1330 aa21.54■■□□□ 1.04
LINC00643-206ENST00000623985 QRICH2Q9H0J4 1663 aa21.53■■□□□ 1.04
LINC00643-206ENST00000623985 TULP4Q9NRJ4 1543 aa21.52■■□□□ 1.04
LINC00643-206ENST00000623985 ESCO1Q5FWF5 840 aa21.52■■□□□ 1.04
LINC00643-206ENST00000623985 TOPAZ1Q8N9V7 1692 aa21.52■■□□□ 1.04
LINC00643-206ENST00000623985 ANKARQ7Z5J8 1434 aa21.52■■□□□ 1.04
LINC00643-206ENST00000623985 MEX3CQ5U5Q3 659 aaKnown RBP21.51■■□□□ 1.03
LINC00643-206ENST00000623985 TRPM3Q9HCF6 1732 aaPredicted RBP21.5■■□□□ 1.03
LINC00643-206ENST00000623985 POGKQ9P215 609 aa21.5■■□□□ 1.03
LINC00643-206ENST00000623985 TRAK1Q9UPV9 953 aa21.49■■□□□ 1.03
LINC00643-206ENST00000623985 NUTM2FA1L443 756 aa21.48■■□□□ 1.03
LINC00643-206ENST00000623985 SAFB2Q14151 953 aaKnown RBP eCLIP21.48■■□□□ 1.03
LINC00643-206ENST00000623985 EIF3AQ14152 1382 aaKnown RBP21.48■■□□□ 1.03
LINC00643-206ENST00000623985 NUTM2BA6NNL0 878 aaPredicted RBP21.46■■□□□ 1.03
LINC00643-206ENST00000623985 NUTM2EB1AL46 878 aaPredicted RBP21.46■■□□□ 1.03
LINC00643-206ENST00000623985 POTEAQ6S8J7 498 aa21.46■■□□□ 1.03
LINC00643-206ENST00000623985 NUTM2AQ8IVF1 878 aaPredicted RBP21.46■■□□□ 1.03
LINC00643-206ENST00000623985 ALS2Q96Q42 1657 aa21.46■■□□□ 1.03
LINC00643-206ENST00000623985 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.46■■□□□ 1.03
LINC00643-206ENST00000623985 FOXO3O43524 673 aa21.44■■□□□ 1.02
LINC00643-206ENST00000623985 ZNF772Q68DY9 489 aaPredicted RBP21.43■■□□□ 1.02
LINC00643-206ENST00000623985 CRYBG1Q9Y4K1 1723 aa21.43■■□□□ 1.02
LINC00643-206ENST00000623985 ATP7BP35670 1465 aa21.41■■□□□ 1.02
LINC00643-206ENST00000623985 TNS3Q68CZ2 1445 aa21.41■■□□□ 1.02
LINC00643-206ENST00000623985 MINK1Q8N4C8 1332 aaPredicted RBP21.41■■□□□ 1.02
LINC00643-206ENST00000623985 TRIM26Q12899 539 aaPredicted RBP21.41■■□□□ 1.02
LINC00643-206ENST00000623985 PLCH1Q4KWH8 1693 aa21.4■■□□□ 1.02
LINC00643-206ENST00000623985 PHF8Q9UPP1 1060 aa21.4■■□□□ 1.02
LINC00643-206ENST00000623985 XPCQ01831 940 aaPredicted RBP21.39■■□□□ 1.01
LINC00643-206ENST00000623985 HIRIP3Q9BW71 556 aaPredicted RBP21.39■■□□□ 1.01
LINC00643-206ENST00000623985 NWD2Q9ULI1 1742 aa21.38■■□□□ 1.01
LINC00643-206ENST00000623985 AFF2P51816 1311 aa21.38■■□□□ 1.01
LINC00643-206ENST00000623985 SIN3AQ96ST3 1273 aa21.38■■□□□ 1.01
LINC00643-206ENST00000623985 WASLO00401 505 aaPredicted RBP21.37■■□□□ 1.01
LINC00643-206ENST00000623985 L3MBTL2Q969R5 705 aa21.37■■□□□ 1.01
LINC00643-206ENST00000623985 CDK12Q9NYV4 1490 aaPredicted RBP21.37■■□□□ 1.01
LINC00643-206ENST00000623985 SPATA31A3Q5VYP0 1347 aa21.36■■□□□ 1.01
LINC00643-206ENST00000623985 C8orf37Q96NL8 207 aa21.36■■□□□ 1.01
LINC00643-206ENST00000623985 SBNO1A3KN83 1393 aa21.36■■□□□ 1.01
LINC00643-206ENST00000623985 PRR36Q9H6K5 1346 aa21.34■■□□□ 1.01
LINC00643-206ENST00000623985 NBPF1Q3BBV0 1214 aa21.34■■□□□ 1.01
LINC00643-206ENST00000623985 KRT28Q7Z3Y7 464 aa21.34■■□□□ 1.01
LINC00643-206ENST00000623985 PHRF1Q9P1Y6 1649 aaKnown RBP21.33■■□□□ 1.01
LINC00643-206ENST00000623985 ADAMTS2O95450 1211 aa21.33■■□□□ 1.01
LINC00643-206ENST00000623985 PSME1Q06323 249 aa21.33■■□□□ 1.01
LINC00643-206ENST00000623985 NEUROD1Q13562 356 aa21.33■■□□□ 1.01
LINC00643-206ENST00000623985 ARHGEF10O15013 1369 aa21.32■■□□□ 1
LINC00643-206ENST00000623985 PMFBP1Q8TBY8 1022 aa21.3■■□□□ 1
LINC00643-206ENST00000623985 NRAPQ86VF7 1730 aa21.29■■□□□ 1
LINC00643-206ENST00000623985 AKAP12Q02952 1782 aa21.29■■□□□ 1
LINC00643-206ENST00000623985 GPRASP1Q5JY77 1395 aa21.29■■□□□ 1
LINC00643-206ENST00000623985 NGLY1Q96IV0 654 aa21.29■■□□□ 1
LINC00643-206ENST00000623985 CENPJQ9HC77 1338 aaPredicted RBP21.29■■□□□ 1
LINC00643-206ENST00000623985 ROCK2O75116 1388 aaKnown RBP21.28■■□□□ 1
LINC00643-206ENST00000623985 RXRBP28702 533 aa21.27■■□□□ 1
LINC00643-206ENST00000623985 COL14A1Q05707 1796 aaKnown RBP21.27■■□□□ 1
LINC00643-206ENST00000623985 RALGAPBQ86X10 1494 aa21.26■□□□□ 0.99
LINC00643-206ENST00000623985 TONSLQ96HA7 1378 aa21.26■□□□□ 0.99
LINC00643-206ENST00000623985 ATRNO75882 1429 aa21.26■□□□□ 0.99
LINC00643-206ENST00000623985 SLIT2O94813 1529 aa21.25■□□□□ 0.99
LINC00643-206ENST00000623985 RGS12O14924 1447 aa21.25■□□□□ 0.99
LINC00643-206ENST00000623985 FNBP4Q8N3X1 1017 aaPredicted RBP21.25■□□□□ 0.99
LINC00643-206ENST00000623985 NUDT16Q96DE0 195 aaKnown RBP21.25■□□□□ 0.99
LINC00643-206ENST00000623985 CDK19Q9BWU1 502 aa21.24■□□□□ 0.99
LINC00643-206ENST00000623985 USP21Q9UK80 565 aa21.24■□□□□ 0.99
LINC00643-206ENST00000623985 BCL9LQ86UU0 1499 aa21.24■□□□□ 0.99
LINC00643-206ENST00000623985 POLR3AO14802 1390 aaPredicted RBP21.23■□□□□ 0.99
LINC00643-206ENST00000623985 RBM6P78332 1123 aaKnown RBP21.22■□□□□ 0.99
LINC00643-206ENST00000623985 NGDNQ8NEJ9 315 aaKnown RBP21.22■□□□□ 0.99
LINC00643-206ENST00000623985 QTRT2Q9H974 415 aaKnown RBP21.22■□□□□ 0.99
LINC00643-206ENST00000623985 BRWD3Q6RI45 1802 aa21.22■□□□□ 0.99
LINC00643-206ENST00000623985 TRPC5Q9UL62 973 aaPredicted RBP21.21■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms