RNA–Protein interactions for RNA: ENST00000622555.1

PTCHD3-202, Transcript of patched domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene PTCHD3, Length 1,720 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3-202ENST00000622555 MINK1Q8N4C8 1332 aaPredicted RBP24.78■■□□□ 1.56
PTCHD3-202ENST00000622555 NWD1Q149M9 1564 aa24.77■■□□□ 1.56
PTCHD3-202ENST00000622555 CDCA8Q53HL2 280 aa24.75■■□□□ 1.55
PTCHD3-202ENST00000622555 DDX10Q13206 875 aaKnown RBP24.75■■□□□ 1.55
PTCHD3-202ENST00000622555 TULP4Q9NRJ4 1543 aa24.74■■□□□ 1.55
PTCHD3-202ENST00000622555 EVC2Q86UK5 1308 aa24.74■■□□□ 1.55
PTCHD3-202ENST00000622555 AEBP2Q6ZN18 517 aaPredicted RBP24.73■■□□□ 1.55
PTCHD3-202ENST00000622555 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.72■■□□□ 1.55
PTCHD3-202ENST00000622555 STRCP1A6NGW2 1772 aa24.7■■□□□ 1.55
PTCHD3-202ENST00000622555 DMRT2Q9Y5R5 561 aa24.7■■□□□ 1.54
PTCHD3-202ENST00000622555 DIEXFQ68CQ4 756 aaKnown RBP24.69■■□□□ 1.54
PTCHD3-202ENST00000622555 NKTRP30414 1462 aaKnown RBP24.68■■□□□ 1.54
PTCHD3-202ENST00000622555 ADGRB2O60241 1585 aa24.68■■□□□ 1.54
PTCHD3-202ENST00000622555 SRPK2P78362 688 aaKnown RBP24.66■■□□□ 1.54
PTCHD3-202ENST00000622555 CDK19Q9BWU1 502 aa24.65■■□□□ 1.54
PTCHD3-202ENST00000622555 CABP2Q9NPB3 220 aa24.65■■□□□ 1.54
PTCHD3-202ENST00000622555 MYOM1P52179 1685 aa24.65■■□□□ 1.54
PTCHD3-202ENST00000622555 WASLO00401 505 aaPredicted RBP24.64■■□□□ 1.53
PTCHD3-202ENST00000622555 PROSER2Q86WR7 435 aaPredicted RBP24.64■■□□□ 1.53
PTCHD3-202ENST00000622555 NALCNQ8IZF0 1738 aa24.63■■□□□ 1.53
PTCHD3-202ENST00000622555 PUS7Q96PZ0 661 aaKnown RBP24.63■■□□□ 1.53
PTCHD3-202ENST00000622555 RBM33Q96EV2 1170 aaKnown RBP24.62■■□□□ 1.53
PTCHD3-202ENST00000622555 ZNF335Q9H4Z2 1342 aaPredicted RBP24.6■■□□□ 1.53
PTCHD3-202ENST00000622555 ATAD2Q6PL18 1390 aa24.59■■□□□ 1.53
PTCHD3-202ENST00000622555 C14orf37Q86TY3 774 aa24.58■■□□□ 1.53
PTCHD3-202ENST00000622555 ADGRL3Q9HAR2 1447 aa24.58■■□□□ 1.53
PTCHD3-202ENST00000622555 TMC1Q8TDI8 760 aa24.57■■□□□ 1.52
PTCHD3-202ENST00000622555 CDC42BPGQ6DT37 1551 aa24.56■■□□□ 1.52
PTCHD3-202ENST00000622555 TMEM94Q12767 1356 aa24.54■■□□□ 1.52
PTCHD3-202ENST00000622555 FMN2Q9NZ56 1722 aa24.54■■□□□ 1.52
PTCHD3-202ENST00000622555 PANK3Q9H999 370 aa24.53■■□□□ 1.52
PTCHD3-202ENST00000622555 SLC12A5Q9H2X9 1139 aa24.52■■□□□ 1.52
PTCHD3-202ENST00000622555 XIRP1Q702N8 1843 aaKnown RBP24.52■■□□□ 1.52
PTCHD3-202ENST00000622555 NINLQ9Y2I6 1382 aa24.52■■□□□ 1.52
PTCHD3-202ENST00000622555 NUDT16Q96DE0 195 aaKnown RBP24.52■■□□□ 1.52
PTCHD3-202ENST00000622555 NCOA3Q9Y6Q9 1424 aa24.52■■□□□ 1.52
PTCHD3-202ENST00000622555 ATP7BP35670 1465 aa24.52■■□□□ 1.51
PTCHD3-202ENST00000622555 NUTM2FA1L443 756 aa24.51■■□□□ 1.51
PTCHD3-202ENST00000622555 RGPD8O14715 1765 aaPredicted RBP24.5■■□□□ 1.51
PTCHD3-202ENST00000622555 USP32Q8NFA0 1604 aa24.5■■□□□ 1.51
PTCHD3-202ENST00000622555 LRRC7Q96NW7 1537 aa24.5■■□□□ 1.51
PTCHD3-202ENST00000622555 PRR36Q9H6K5 1346 aa24.5■■□□□ 1.51
PTCHD3-202ENST00000622555 ITSN1Q15811 1721 aa24.49■■□□□ 1.51
PTCHD3-202ENST00000622555 TOPAZ1Q8N9V7 1692 aa24.49■■□□□ 1.51
PTCHD3-202ENST00000622555 PPIP5K1Q6PFW1 1433 aa24.48■■□□□ 1.51
PTCHD3-202ENST00000622555 CCDC61Q9Y6R9 512 aa24.48■■□□□ 1.51
PTCHD3-202ENST00000622555 C19orf44Q9H6X5 657 aa24.47■■□□□ 1.51
PTCHD3-202ENST00000622555 CABP1Q9NZU7 370 aa24.47■■□□□ 1.51
PTCHD3-202ENST00000622555 ANKARQ7Z5J8 1434 aa24.46■■□□□ 1.51
PTCHD3-202ENST00000622555 ANKRD36BQ8N2N9 1353 aa24.45■■□□□ 1.5
PTCHD3-202ENST00000622555 MSH6P52701 1360 aa24.43■■□□□ 1.5
PTCHD3-202ENST00000622555 PER1O15534 1290 aaPredicted RBP24.43■■□□□ 1.5
PTCHD3-202ENST00000622555 TERF2IPQ9NYB0 399 aa24.43■■□□□ 1.5
PTCHD3-202ENST00000622555 DCCP43146 1447 aa24.42■■□□□ 1.5
PTCHD3-202ENST00000622555 A0A1W2PP64 1363 aa24.42■■□□□ 1.5
PTCHD3-202ENST00000622555 CD163L1Q9NR16 1453 aa24.42■■□□□ 1.5
PTCHD3-202ENST00000622555 HDGFL2Q7Z4V5 671 aaPredicted RBP24.41■■□□□ 1.5
PTCHD3-202ENST00000622555 KNSTRNQ9Y448 316 aa24.41■■□□□ 1.5
PTCHD3-202ENST00000622555 ANP32CO43423 234 aa24.41■■□□□ 1.5
PTCHD3-202ENST00000622555 ATF3P18847 181 aa24.41■■□□□ 1.5
PTCHD3-202ENST00000622555 CARD14Q9BXL6 1004 aa24.41■■□□□ 1.5
PTCHD3-202ENST00000622555 LTBP4Q8N2S1 1624 aa24.4■■□□□ 1.5
PTCHD3-202ENST00000622555 AKAP12Q02952 1782 aa24.4■■□□□ 1.5
PTCHD3-202ENST00000622555 NSD3Q9BZ95 1437 aa24.39■■□□□ 1.49
PTCHD3-202ENST00000622555 PLEKHG3A1L390 1219 aa24.38■■□□□ 1.49
PTCHD3-202ENST00000622555 CNGB1Q14028 1251 aaPredicted RBP24.38■■□□□ 1.49
PTCHD3-202ENST00000622555 MIER1Q8N108 512 aa24.38■■□□□ 1.49
PTCHD3-202ENST00000622555 CADPS2Q86UW7 1296 aa24.37■■□□□ 1.49
PTCHD3-202ENST00000622555 CPSF1Q10570 1443 aaKnown RBP24.36■■□□□ 1.49
PTCHD3-202ENST00000622555 MON2Q7Z3U7 1717 aa24.35■■□□□ 1.49
PTCHD3-202ENST00000622555 PMFBP1Q8TBY8 1022 aa24.35■■□□□ 1.49
PTCHD3-202ENST00000622555 ACEP12821 1306 aa24.35■■□□□ 1.49
PTCHD3-202ENST00000622555 KTN1Q86UP2 1357 aaKnown RBP24.34■■□□□ 1.49
PTCHD3-202ENST00000622555 MST1RQ04912 1400 aa24.34■■□□□ 1.49
PTCHD3-202ENST00000622555 C1orf167Q5SNV9 1468 aa24.34■■□□□ 1.49
PTCHD3-202ENST00000622555 ESCO1Q5FWF5 840 aa24.33■■□□□ 1.49
PTCHD3-202ENST00000622555 NGDNQ8NEJ9 315 aaKnown RBP24.32■■□□□ 1.48
PTCHD3-202ENST00000622555 PHF8Q9UPP1 1060 aa24.32■■□□□ 1.48
PTCHD3-202ENST00000622555 AMER1Q5JTC6 1135 aaPredicted RBP24.32■■□□□ 1.48
PTCHD3-202ENST00000622555 CC2D1BQ5T0F9 858 aaKnown RBP24.32■■□□□ 1.48
PTCHD3-202ENST00000622555 ZNF692Q9BU19 519 aaPredicted RBP24.32■■□□□ 1.48
PTCHD3-202ENST00000622555 POLR3AO14802 1390 aaPredicted RBP24.31■■□□□ 1.48
PTCHD3-202ENST00000622555 PRKRIP1Q9H875 184 aaPredicted RBP24.31■■□□□ 1.48
PTCHD3-202ENST00000622555 CGNL1Q0VF96 1302 aa24.3■■□□□ 1.48
PTCHD3-202ENST00000622555 KIF1AQ12756 1690 aa24.29■■□□□ 1.48
PTCHD3-202ENST00000622555 EDC4Q6P2E9 1401 aaKnown RBP24.29■■□□□ 1.48
PTCHD3-202ENST00000622555 NPC1L1Q9UHC9 1359 aa24.29■■□□□ 1.48
PTCHD3-202ENST00000622555 ORAI2Q96SN7 254 aa24.29■■□□□ 1.48
PTCHD3-202ENST00000622555 KIF20BQ96Q89 1820 aa24.29■■□□□ 1.48
PTCHD3-202ENST00000622555 USP6P35125 1406 aa24.27■■□□□ 1.48
PTCHD3-202ENST00000622555 NRKQ7Z2Y5 1582 aa24.27■■□□□ 1.48
PTCHD3-202ENST00000622555 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.26■■□□□ 1.47
PTCHD3-202ENST00000622555 RALBP1Q15311 655 aa24.24■■□□□ 1.47
PTCHD3-202ENST00000622555 PARD3Q8TEW0 1356 aa24.24■■□□□ 1.47
PTCHD3-202ENST00000622555 NSD2O96028 1365 aa24.23■■□□□ 1.47
PTCHD3-202ENST00000622555 ANKRD26Q9UPS8 1709 aa24.23■■□□□ 1.47
PTCHD3-202ENST00000622555 SLAIN2Q9P270 581 aa24.23■■□□□ 1.47
PTCHD3-202ENST00000622555 TTC21BQ7Z4L5 1316 aa24.21■■□□□ 1.47
PTCHD3-202ENST00000622555 FYB1O15117 783 aa24.21■■□□□ 1.47
PTCHD3-202ENST00000622555 FOXO3O43524 673 aa24.2■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms