RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 KIAA1210Q9ULL0 1709 aa23.61■■□□□ 1.37
LSM4-206ENST00000600289 ADGRL3Q9HAR2 1447 aa23.59■■□□□ 1.37
LSM4-206ENST00000600289 LRPPRCP42704 1394 aaKnown RBP23.58■■□□□ 1.37
LSM4-206ENST00000600289 ATAD2Q6PL18 1390 aa23.58■■□□□ 1.37
LSM4-206ENST00000600289 C19orf44Q9H6X5 657 aa23.58■■□□□ 1.37
LSM4-206ENST00000600289 C14orf93Q9H972 538 aaKnown RBP23.58■■□□□ 1.37
LSM4-206ENST00000600289 ADGRB1O14514 1584 aa23.57■■□□□ 1.36
LSM4-206ENST00000600289 ROBO2Q9HCK4 1378 aa23.57■■□□□ 1.36
LSM4-206ENST00000600289 BRINP3Q76B58 766 aa23.57■■□□□ 1.36
LSM4-206ENST00000600289 ZRANB1Q9UGI0 708 aa23.57■■□□□ 1.36
LSM4-206ENST00000600289 CADPS2Q86UW7 1296 aa23.56■■□□□ 1.36
LSM4-206ENST00000600289 QTRT2Q9H974 415 aaKnown RBP23.56■■□□□ 1.36
LSM4-206ENST00000600289 ABCC11Q96J66 1382 aa23.55■■□□□ 1.36
LSM4-206ENST00000600289 YTHDC2Q9H6S0 1430 aaKnown RBP23.55■■□□□ 1.36
LSM4-206ENST00000600289 DLC1Q96QB1 1528 aa23.54■■□□□ 1.36
LSM4-206ENST00000600289 CDC42BPGQ6DT37 1551 aa23.53■■□□□ 1.36
LSM4-206ENST00000600289 C14orf37Q86TY3 774 aa23.53■■□□□ 1.36
LSM4-206ENST00000600289 DCAF11Q8TEB1 546 aa23.53■■□□□ 1.36
LSM4-206ENST00000600289 C8orf37Q96NL8 207 aa23.52■■□□□ 1.36
LSM4-206ENST00000600289 ATF3P18847 181 aa23.5■■□□□ 1.35
LSM4-206ENST00000600289 CFAP70Q5T0N1 1121 aa23.5■■□□□ 1.35
LSM4-206ENST00000600289 LRP5O75197 1615 aa23.5■■□□□ 1.35
LSM4-206ENST00000600289 SIRT1Q96EB6 747 aa23.49■■□□□ 1.35
LSM4-206ENST00000600289 MST1RQ04912 1400 aa23.49■■□□□ 1.35
LSM4-206ENST00000600289 PNPLA6Q8IY17 1366 aa23.48■■□□□ 1.35
LSM4-206ENST00000600289 TMEM132EQ6IEE7 984 aa23.47■■□□□ 1.35
LSM4-206ENST00000600289 ARHGEF28Q8N1W1 1705 aaKnown RBP23.47■■□□□ 1.35
LSM4-206ENST00000600289 FMN2Q9NZ56 1722 aa23.45■■□□□ 1.34
LSM4-206ENST00000600289 KDM2AQ9Y2K7 1162 aa23.45■■□□□ 1.34
LSM4-206ENST00000600289 ADGRB2O60241 1585 aa23.44■■□□□ 1.34
LSM4-206ENST00000600289 NGLY1Q96IV0 654 aa23.43■■□□□ 1.34
LSM4-206ENST00000600289 TRPM1Q7Z4N2 1603 aa23.42■■□□□ 1.34
LSM4-206ENST00000600289 STK26Q9P289 416 aa23.42■■□□□ 1.34
LSM4-206ENST00000600289 SIN3AQ96ST3 1273 aa23.41■■□□□ 1.34
LSM4-206ENST00000600289 LRRC59Q96AG4 307 aaKnown RBP23.4■■□□□ 1.34
LSM4-206ENST00000600289 PLEKHH1Q9ULM0 1364 aa23.4■■□□□ 1.34
LSM4-206ENST00000600289 C1orf167Q5SNV9 1468 aa23.39■■□□□ 1.34
LSM4-206ENST00000600289 ATRNO75882 1429 aa23.38■■□□□ 1.33
LSM4-206ENST00000600289 WAPLQ7Z5K2 1190 aa23.37■■□□□ 1.33
LSM4-206ENST00000600289 DDX17Q92841 729 aaKnown RBP23.37■■□□□ 1.33
LSM4-206ENST00000600289 L3MBTL2Q969R5 705 aa23.37■■□□□ 1.33
LSM4-206ENST00000600289 ADAMTS2O95450 1211 aa23.35■■□□□ 1.33
LSM4-206ENST00000600289 MARF1Q9Y4F3 1742 aaKnown RBP23.35■■□□□ 1.33
LSM4-206ENST00000600289 CCDC125Q86Z20 511 aa23.34■■□□□ 1.33
LSM4-206ENST00000600289 KIF1AQ12756 1690 aa23.34■■□□□ 1.33
LSM4-206ENST00000600289 RGPD8O14715 1765 aaPredicted RBP23.33■■□□□ 1.33
LSM4-206ENST00000600289 USP21Q9UK80 565 aa23.33■■□□□ 1.33
LSM4-206ENST00000600289 TRPC5Q9UL62 973 aaPredicted RBP23.33■■□□□ 1.33
LSM4-206ENST00000600289 COL22A1Q8NFW1 1626 aaPredicted RBP23.33■■□□□ 1.32
LSM4-206ENST00000600289 NEUROD1Q13562 356 aa23.32■■□□□ 1.32
LSM4-206ENST00000600289 PRAM1Q96QH2 718 aa23.31■■□□□ 1.32
LSM4-206ENST00000600289 USP32Q8NFA0 1604 aa23.3■■□□□ 1.32
LSM4-206ENST00000600289 BRWD3Q6RI45 1802 aa23.3■■□□□ 1.32
LSM4-206ENST00000600289 FNBP4Q8N3X1 1017 aaPredicted RBP23.29■■□□□ 1.32
LSM4-206ENST00000600289 PCGF6Q9BYE7 350 aa23.29■■□□□ 1.32
LSM4-206ENST00000600289 TRAK1Q9UPV9 953 aa23.29■■□□□ 1.32
LSM4-206ENST00000600289 TONSLQ96HA7 1378 aa23.27■■□□□ 1.31
LSM4-206ENST00000600289 ITSN1Q15811 1721 aa23.26■■□□□ 1.31
LSM4-206ENST00000600289 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.26■■□□□ 1.31
LSM4-206ENST00000600289 POGKQ9P215 609 aa23.26■■□□□ 1.31
LSM4-206ENST00000600289 CLSPNQ9HAW4 1339 aa23.26■■□□□ 1.31
LSM4-206ENST00000600289 QRICH2Q9H0J4 1663 aa23.25■■□□□ 1.31
LSM4-206ENST00000600289 ANKARQ7Z5J8 1434 aa23.25■■□□□ 1.31
LSM4-206ENST00000600289 BLMP54132 1417 aaPredicted RBP23.25■■□□□ 1.31
LSM4-206ENST00000600289 NBPF1Q3BBV0 1214 aa23.24■■□□□ 1.31
LSM4-206ENST00000600289 BCL9LQ86UU0 1499 aa23.24■■□□□ 1.31
LSM4-206ENST00000600289 TULP4Q9NRJ4 1543 aa23.23■■□□□ 1.31
LSM4-206ENST00000600289 EIF3AQ14152 1382 aaKnown RBP23.23■■□□□ 1.31
LSM4-206ENST00000600289 ORAI2Q96SN7 254 aa23.22■■□□□ 1.31
LSM4-206ENST00000600289 GPRASP1Q5JY77 1395 aa23.22■■□□□ 1.31
LSM4-206ENST00000600289 RALGAPBQ86X10 1494 aa23.21■■□□□ 1.31
LSM4-206ENST00000600289 GLI3P10071 1580 aa23.21■■□□□ 1.31
LSM4-206ENST00000600289 TOPAZ1Q8N9V7 1692 aa23.2■■□□□ 1.3
LSM4-206ENST00000600289 PXDNQ92626 1479 aa23.2■■□□□ 1.3
LSM4-206ENST00000600289 SAFB2Q14151 953 aaKnown RBP eCLIP23.2■■□□□ 1.3
LSM4-206ENST00000600289 SOS2Q07890 1332 aaPredicted RBP23.19■■□□□ 1.3
LSM4-206ENST00000600289 DEFB132Q7Z7B7 95 aa23.19■■□□□ 1.3
LSM4-206ENST00000600289 ROCK2O75116 1388 aaKnown RBP23.17■■□□□ 1.3
LSM4-206ENST00000600289 NBPF8Q3BBV2 869 aa23.17■■□□□ 1.3
LSM4-206ENST00000600289 ESCO1Q5FWF5 840 aa23.17■■□□□ 1.3
LSM4-206ENST00000600289 NPHP3Q7Z494 1330 aa23.16■■□□□ 1.3
LSM4-206ENST00000600289 MINK1Q8N4C8 1332 aaPredicted RBP23.16■■□□□ 1.3
LSM4-206ENST00000600289 WASLO00401 505 aaPredicted RBP23.15■■□□□ 1.3
LSM4-206ENST00000600289 ATP7BP35670 1465 aa23.15■■□□□ 1.3
LSM4-206ENST00000600289 CENPJQ9HC77 1338 aaPredicted RBP23.13■■□□□ 1.29
LSM4-206ENST00000600289 GJD4Q96KN9 370 aaPredicted RBP23.13■■□□□ 1.29
LSM4-206ENST00000600289 NUTM2FA1L443 756 aa23.12■■□□□ 1.29
LSM4-206ENST00000600289 HIRIP3Q9BW71 556 aaPredicted RBP23.12■■□□□ 1.29
LSM4-206ENST00000600289 TIMELESSQ9UNS1 1208 aa23.12■■□□□ 1.29
LSM4-206ENST00000600289 TRPM3Q9HCF6 1732 aaPredicted RBP23.11■■□□□ 1.29
LSM4-206ENST00000600289 PHF8Q9UPP1 1060 aa23.1■■□□□ 1.29
LSM4-206ENST00000600289 PRR36Q9H6K5 1346 aa23.09■■□□□ 1.29
LSM4-206ENST00000600289 PSDA5PKW4 1024 aaPredicted RBP23.07■■□□□ 1.28
LSM4-206ENST00000600289 FOXO3O43524 673 aa23.07■■□□□ 1.28
LSM4-206ENST00000600289 SBNO2Q9Y2G9 1366 aa23.06■■□□□ 1.28
LSM4-206ENST00000600289 ALS2Q96Q42 1657 aa23.06■■□□□ 1.28
LSM4-206ENST00000600289 ABCA3Q99758 1704 aa23.05■■□□□ 1.28
LSM4-206ENST00000600289 SLIT2O94813 1529 aa23.04■■□□□ 1.28
LSM4-206ENST00000600289 CDK19Q9BWU1 502 aa23.04■■□□□ 1.28
LSM4-206ENST00000600289 SBNO1A3KN83 1393 aa23.03■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms