RNA–Protein interactions for RNA: ENST00000598969.5

COPE-208, Transcript of coatomer protein complex subunit epsilon, human

TSL 5

Gene COPE, Length 1,770 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COPE-208	ENST00000598969	SLC24A1	O60721	1099 aa		29.13	■■■□□ 2.25
COPE-208	ENST00000598969	MINK1	Q8N4C8	1332 aa	Predicted RBP	29.11	■■■□□ 2.25
COPE-208	ENST00000598969	TULP4	Q9NRJ4	1543 aa		29.1	■■■□□ 2.25
COPE-208	ENST00000598969	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	29.07	■■■□□ 2.24
COPE-208	ENST00000598969	AEBP2	Q6ZN18	517 aa	Predicted RBP	29.06	■■■□□ 2.24
COPE-208	ENST00000598969	STRCP1	A6NGW2	1772 aa		29.06	■■■□□ 2.24
COPE-208	ENST00000598969	POLR3GL	Q9BT43	218 aa		29.06	■■■□□ 2.24
COPE-208	ENST00000598969	EVC2	Q86UK5	1308 aa		29.05	■■■□□ 2.24
COPE-208	ENST00000598969	DMRT2	Q9Y5R5	561 aa		29.05	■■■□□ 2.24
COPE-208	ENST00000598969	DDX10	Q13206	875 aa	Known RBP	29.04	■■■□□ 2.24
COPE-208	ENST00000598969	CDCA8	Q53HL2	280 aa		29.03	■■■□□ 2.24
COPE-208	ENST00000598969	NKTR	P30414	1462 aa	Known RBP	29.03	■■■□□ 2.24
COPE-208	ENST00000598969	ADGRB2	O60241	1585 aa		29.01	■■■□□ 2.23
COPE-208	ENST00000598969	PUS7	Q96PZ0	661 aa	Known RBP	28.98	■■■□□ 2.23
COPE-208	ENST00000598969	CDK19	Q9BWU1	502 aa		28.98	■■■□□ 2.23
COPE-208	ENST00000598969	RBM33	Q96EV2	1170 aa	Known RBP	28.98	■■■□□ 2.23
COPE-208	ENST00000598969	WASL	O00401	505 aa	Predicted RBP	28.97	■■■□□ 2.23
COPE-208	ENST00000598969	CABP2	Q9NPB3	220 aa		28.97	■■■□□ 2.23
COPE-208	ENST00000598969	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	28.97	■■■□□ 2.23
COPE-208	ENST00000598969	PROSER2	Q86WR7	435 aa	Predicted RBP	28.96	■■■□□ 2.23
COPE-208	ENST00000598969	SRPK2	P78362	688 aa	Known RBP	28.94	■■■□□ 2.22
COPE-208	ENST00000598969	NALCN	Q8IZF0	1738 aa		28.94	■■■□□ 2.22
COPE-208	ENST00000598969	MYOM1	P52179	1685 aa		28.94	■■■□□ 2.22
COPE-208	ENST00000598969	ADGRL3	Q9HAR2	1447 aa		28.92	■■■□□ 2.22
COPE-208	ENST00000598969	TMEM94	Q12767	1356 aa		28.89	■■■□□ 2.21
COPE-208	ENST00000598969	ATAD2	Q6PL18	1390 aa		28.89	■■■□□ 2.21
COPE-208	ENST00000598969	CDC42BPG	Q6DT37	1551 aa		28.87	■■■□□ 2.21
COPE-208	ENST00000598969	NCOA3	Q9Y6Q9	1424 aa		28.86	■■■□□ 2.21
COPE-208	ENST00000598969	LRRC7	Q96NW7	1537 aa		28.86	■■■□□ 2.21
COPE-208	ENST00000598969	PRR36	Q9H6K5	1346 aa		28.85	■■■□□ 2.21
COPE-208	ENST00000598969	SLC12A5	Q9H2X9	1139 aa		28.85	■■■□□ 2.21
COPE-208	ENST00000598969	ATP7B	P35670	1465 aa		28.84	■■■□□ 2.21
COPE-208	ENST00000598969	NUDT16	Q96DE0	195 aa	Known RBP	28.83	■■■□□ 2.21
COPE-208	ENST00000598969	C14orf37	Q86TY3	774 aa		28.83	■■■□□ 2.21
COPE-208	ENST00000598969	MIER1	Q8N108	512 aa		28.83	■■■□□ 2.21
COPE-208	ENST00000598969	TMC1	Q8TDI8	760 aa		28.83	■■■□□ 2.21
COPE-208	ENST00000598969	PANK3	Q9H999	370 aa		28.83	■■■□□ 2.21
COPE-208	ENST00000598969	XIRP1	Q702N8	1843 aa	Known RBP	28.83	■■■□□ 2.21
COPE-208	ENST00000598969	FMN2	Q9NZ56	1722 aa		28.82	■■■□□ 2.2
COPE-208	ENST00000598969	USP32	Q8NFA0	1604 aa		28.82	■■■□□ 2.2
COPE-208	ENST00000598969	NINL	Q9Y2I6	1382 aa		28.8	■■■□□ 2.2
COPE-208	ENST00000598969	NUTM2F	A1L443	756 aa		28.8	■■■□□ 2.2
COPE-208	ENST00000598969	C19orf44	Q9H6X5	657 aa		28.79	■■■□□ 2.2
COPE-208	ENST00000598969	CABP1	Q9NZU7	370 aa		28.78	■■■□□ 2.2
COPE-208	ENST00000598969	CCDC61	Q9Y6R9	512 aa		28.78	■■■□□ 2.2
COPE-208	ENST00000598969	TOPAZ1	Q8N9V7	1692 aa		28.77	■■■□□ 2.2
COPE-208	ENST00000598969	ANKAR	Q7Z5J8	1434 aa		28.77	■■■□□ 2.2
COPE-208	ENST00000598969	PER1	O15534	1290 aa	Predicted RBP	28.76	■■■□□ 2.19
COPE-208	ENST00000598969	PPIP5K1	Q6PFW1	1433 aa		28.76	■■■□□ 2.19
COPE-208	ENST00000598969	LTBP4	Q8N2S1	1624 aa		28.76	■■■□□ 2.19
COPE-208	ENST00000598969	CD163L1	Q9NR16	1453 aa		28.75	■■■□□ 2.19
COPE-208	ENST00000598969	DCC	P43146	1447 aa		28.74	■■■□□ 2.19
COPE-208	ENST00000598969	RGPD8	O14715	1765 aa	Predicted RBP	28.73	■■■□□ 2.19
COPE-208	ENST00000598969	ANKRD36B	Q8N2N9	1353 aa		28.73	■■■□□ 2.19
COPE-208	ENST00000598969	CARD14	Q9BXL6	1004 aa		28.73	■■■□□ 2.19
COPE-208	ENST00000598969		A0A1W2PP64	1363 aa		28.71	■■■□□ 2.19
COPE-208	ENST00000598969	MSH6	P52701	1360 aa		28.71	■■■□□ 2.19
COPE-208	ENST00000598969	PLEKHG3	A1L390	1219 aa		28.7	■■■□□ 2.18
COPE-208	ENST00000598969	ITSN1	Q15811	1721 aa		28.7	■■■□□ 2.18
COPE-208	ENST00000598969	CPSF1	Q10570	1443 aa	Known RBP	28.68	■■■□□ 2.18
COPE-208	ENST00000598969	TERF2IP	Q9NYB0	399 aa		28.67	■■■□□ 2.18
COPE-208	ENST00000598969	ATF3	P18847	181 aa		28.67	■■■□□ 2.18
COPE-208	ENST00000598969	MST1R	Q04912	1400 aa		28.66	■■■□□ 2.18
COPE-208	ENST00000598969	CADPS2	Q86UW7	1296 aa		28.65	■■■□□ 2.18
COPE-208	ENST00000598969	NSD3	Q9BZ95	1437 aa		28.65	■■■□□ 2.18
COPE-208	ENST00000598969	C1orf167	Q5SNV9	1468 aa		28.65	■■■□□ 2.18
COPE-208	ENST00000598969	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	28.65	■■■□□ 2.18
COPE-208	ENST00000598969	KNSTRN	Q9Y448	316 aa		28.64	■■■□□ 2.18
COPE-208	ENST00000598969	PMFBP1	Q8TBY8	1022 aa		28.63	■■■□□ 2.17
COPE-208	ENST00000598969	ACE	P12821	1306 aa		28.63	■■■□□ 2.17
COPE-208	ENST00000598969	AKAP12	Q02952	1782 aa		28.63	■■■□□ 2.17
COPE-208	ENST00000598969	ANP32C	O43423	234 aa		28.62	■■■□□ 2.17
COPE-208	ENST00000598969	AMER1	Q5JTC6	1135 aa	Predicted RBP	28.62	■■■□□ 2.17
COPE-208	ENST00000598969	POLR3A	O14802	1390 aa	Predicted RBP	28.61	■■■□□ 2.17
COPE-208	ENST00000598969	ORAI2	Q96SN7	254 aa		28.6	■■■□□ 2.17
COPE-208	ENST00000598969	PHF8	Q9UPP1	1060 aa		28.6	■■■□□ 2.17
COPE-208	ENST00000598969	KTN1	Q86UP2	1357 aa	Known RBP	28.59	■■■□□ 2.17
COPE-208	ENST00000598969	MON2	Q7Z3U7	1717 aa		28.59	■■■□□ 2.17
COPE-208	ENST00000598969	ESCO1	Q5FWF5	840 aa		28.59	■■■□□ 2.17
COPE-208	ENST00000598969	ZNF692	Q9BU19	519 aa	Predicted RBP	28.58	■■■□□ 2.17
COPE-208	ENST00000598969	NPC1L1	Q9UHC9	1359 aa		28.57	■■■□□ 2.16
COPE-208	ENST00000598969	CNGB1	Q14028	1251 aa	Predicted RBP	28.56	■■■□□ 2.16
COPE-208	ENST00000598969	NGDN	Q8NEJ9	315 aa	Known RBP	28.56	■■■□□ 2.16
COPE-208	ENST00000598969	PRKRIP1	Q9H875	184 aa	Predicted RBP	28.56	■■■□□ 2.16
COPE-208	ENST00000598969	EDC4	Q6P2E9	1401 aa	Known RBP	28.55	■■■□□ 2.16
COPE-208	ENST00000598969	USP6	P35125	1406 aa		28.54	■■■□□ 2.16
COPE-208	ENST00000598969	CC2D1B	Q5T0F9	858 aa	Known RBP	28.54	■■■□□ 2.16
COPE-208	ENST00000598969	CGNL1	Q0VF96	1302 aa		28.53	■■■□□ 2.16
COPE-208	ENST00000598969	NRK	Q7Z2Y5	1582 aa		28.52	■■■□□ 2.16
COPE-208	ENST00000598969	SLAIN2	Q9P270	581 aa		28.52	■■■□□ 2.16
COPE-208	ENST00000598969	SSH2	Q76I76	1423 aa		28.52	■■■□□ 2.16
COPE-208	ENST00000598969	KIF1A	Q12756	1690 aa		28.51	■■■□□ 2.15
COPE-208	ENST00000598969	PARD3	Q8TEW0	1356 aa		28.5	■■■□□ 2.15
COPE-208	ENST00000598969	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	28.49	■■■□□ 2.15
COPE-208	ENST00000598969	FYB1	O15117	783 aa		28.48	■■■□□ 2.15
COPE-208	ENST00000598969	TTC21B	Q7Z4L5	1316 aa		28.48	■■■□□ 2.15
COPE-208	ENST00000598969	NSD2	O96028	1365 aa		28.46	■■■□□ 2.15
COPE-208	ENST00000598969	FOXO3	O43524	673 aa		28.46	■■■□□ 2.15
COPE-208	ENST00000598969	RALBP1	Q15311	655 aa		28.46	■■■□□ 2.15
COPE-208	ENST00000598969	BRINP3	Q76B58	766 aa		28.45	■■■□□ 2.15

Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms