RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 NALCNQ8IZF0 1738 aa20.39■□□□□ 0.85
SHKBP1-217ENST00000598558 DLC1Q96QB1 1528 aa20.38■□□□□ 0.85
SHKBP1-217ENST00000598558 POGKQ9P215 609 aa20.38■□□□□ 0.85
SHKBP1-217ENST00000598558 DCCP43146 1447 aa20.37■□□□□ 0.85
SHKBP1-217ENST00000598558 MST1RQ04912 1400 aa20.37■□□□□ 0.85
SHKBP1-217ENST00000598558 KIAA1210Q9ULL0 1709 aa20.36■□□□□ 0.85
SHKBP1-217ENST00000598558 HIRIP3Q9BW71 556 aaPredicted RBP20.35■□□□□ 0.85
SHKBP1-217ENST00000598558 NUTM2FA1L443 756 aa20.34■□□□□ 0.85
SHKBP1-217ENST00000598558 BRINP3Q76B58 766 aa20.34■□□□□ 0.85
SHKBP1-217ENST00000598558 TRPM1Q7Z4N2 1603 aa20.34■□□□□ 0.85
SHKBP1-217ENST00000598558 MINK1Q8N4C8 1332 aaPredicted RBP20.33■□□□□ 0.85
SHKBP1-217ENST00000598558 ORAI2Q96SN7 254 aa20.33■□□□□ 0.85
SHKBP1-217ENST00000598558 ROCK2O75116 1388 aaKnown RBP20.33■□□□□ 0.84
SHKBP1-217ENST00000598558 GPRASP1Q5JY77 1395 aa20.33■□□□□ 0.84
SHKBP1-217ENST00000598558 C1orf167Q5SNV9 1468 aa20.32■□□□□ 0.84
SHKBP1-217ENST00000598558 TIMELESSQ9UNS1 1208 aa20.32■□□□□ 0.84
SHKBP1-217ENST00000598558 DDX17Q92841 729 aaKnown RBP20.3■□□□□ 0.84
SHKBP1-217ENST00000598558 ROBO1Q9Y6N7 1651 aa20.29■□□□□ 0.84
SHKBP1-217ENST00000598558 CARD11Q9BXL7 1154 aa20.28■□□□□ 0.84
SHKBP1-217ENST00000598558 RALGAPBQ86X10 1494 aa20.28■□□□□ 0.84
SHKBP1-217ENST00000598558 CDC42BPGQ6DT37 1551 aa20.28■□□□□ 0.84
SHKBP1-217ENST00000598558 ARHGEF28Q8N1W1 1705 aaKnown RBP20.27■□□□□ 0.84
SHKBP1-217ENST00000598558 WASLO00401 505 aaPredicted RBP20.26■□□□□ 0.83
SHKBP1-217ENST00000598558 PRR36Q9H6K5 1346 aa20.26■□□□□ 0.83
SHKBP1-217ENST00000598558 CENPJQ9HC77 1338 aaPredicted RBP20.26■□□□□ 0.83
SHKBP1-217ENST00000598558 ESCO1Q5FWF5 840 aa20.24■□□□□ 0.83
SHKBP1-217ENST00000598558 CDK19Q9BWU1 502 aa20.22■□□□□ 0.83
SHKBP1-217ENST00000598558 ADGRB2O60241 1585 aa20.21■□□□□ 0.83
SHKBP1-217ENST00000598558 FMN2Q9NZ56 1722 aa20.2■□□□□ 0.82
SHKBP1-217ENST00000598558 FOXO3O43524 673 aa20.19■□□□□ 0.82
SHKBP1-217ENST00000598558 NUDT16Q96DE0 195 aaKnown RBP20.18■□□□□ 0.82
SHKBP1-217ENST00000598558 AHDC1Q5TGY3 1603 aaPredicted RBP20.17■□□□□ 0.82
SHKBP1-217ENST00000598558 USP32Q8NFA0 1604 aa20.17■□□□□ 0.82
SHKBP1-217ENST00000598558 PMFBP1Q8TBY8 1022 aa20.17■□□□□ 0.82
SHKBP1-217ENST00000598558 PHF8Q9UPP1 1060 aa20.17■□□□□ 0.82
SHKBP1-217ENST00000598558 XPCQ01831 940 aaPredicted RBP20.16■□□□□ 0.82
SHKBP1-217ENST00000598558 CABP2Q9NPB3 220 aa20.16■□□□□ 0.82
SHKBP1-217ENST00000598558 ANKARQ7Z5J8 1434 aa20.16■□□□□ 0.82
SHKBP1-217ENST00000598558 ST20-MTHFSA0A0A6YYL1 179 aa20.15■□□□□ 0.82
SHKBP1-217ENST00000598558 SOS2Q07890 1332 aaPredicted RBP20.15■□□□□ 0.82
SHKBP1-217ENST00000598558 COL16A1Q07092 1604 aaPredicted RBP20.15■□□□□ 0.82
SHKBP1-217ENST00000598558 TULP4Q9NRJ4 1543 aa20.14■□□□□ 0.81
SHKBP1-217ENST00000598558 TESK2Q96S53 571 aa20.14■□□□□ 0.81
SHKBP1-217ENST00000598558 EIF3AQ14152 1382 aaKnown RBP20.13■□□□□ 0.81
SHKBP1-217ENST00000598558 PHLPP1O60346 1717 aa20.13■□□□□ 0.81
SHKBP1-217ENST00000598558 ATP7BP35670 1465 aa20.12■□□□□ 0.81
SHKBP1-217ENST00000598558 SRPK2P78362 688 aaKnown RBP20.12■□□□□ 0.81
SHKBP1-217ENST00000598558 NHSL1Q5SYE7 1610 aa20.12■□□□□ 0.81
SHKBP1-217ENST00000598558 QRICH2Q9H0J4 1663 aa20.11■□□□□ 0.81
SHKBP1-217ENST00000598558 USP47Q96K76 1375 aa20.1■□□□□ 0.81
SHKBP1-217ENST00000598558 NPHP3Q7Z494 1330 aa20.1■□□□□ 0.81
SHKBP1-217ENST00000598558 KRT28Q7Z3Y7 464 aa20.1■□□□□ 0.81
SHKBP1-217ENST00000598558 RGPD8O14715 1765 aaPredicted RBP20.1■□□□□ 0.81
SHKBP1-217ENST00000598558 PXDNQ92626 1479 aa20.1■□□□□ 0.81
SHKBP1-217ENST00000598558 EVC2Q86UK5 1308 aa20.09■□□□□ 0.81
SHKBP1-217ENST00000598558 LRRC59Q96AG4 307 aaKnown RBP20.09■□□□□ 0.81
SHKBP1-217ENST00000598558 CCDC61Q9Y6R9 512 aa20.09■□□□□ 0.81
SHKBP1-217ENST00000598558 JCADQ9P266 1359 aa20.08■□□□□ 0.81
SHKBP1-217ENST00000598558 SBNO2Q9Y2G9 1366 aa20.08■□□□□ 0.81
SHKBP1-217ENST00000598558 PLEKHG3A1L390 1219 aa20.07■□□□□ 0.8
SHKBP1-217ENST00000598558 CABP1Q9NZU7 370 aa20.06■□□□□ 0.8
SHKBP1-217ENST00000598558 PSME1Q06323 249 aa20.05■□□□□ 0.8
SHKBP1-217ENST00000598558 PNPLA6Q8IY17 1366 aa20.05■□□□□ 0.8
SHKBP1-217ENST00000598558 ACEP12821 1306 aa20.04■□□□□ 0.8
SHKBP1-217ENST00000598558 NGDNQ8NEJ9 315 aaKnown RBP20.04■□□□□ 0.8
SHKBP1-217ENST00000598558 SPATA31A3Q5VYP0 1347 aa20.03■□□□□ 0.8
SHKBP1-217ENST00000598558 PPIP5K1Q6PFW1 1433 aa20.02■□□□□ 0.8
SHKBP1-217ENST00000598558 HSPA5P11021 654 aaKnown RBP20.02■□□□□ 0.8
SHKBP1-217ENST00000598558 POLR3AO14802 1390 aaPredicted RBP20.02■□□□□ 0.8
SHKBP1-217ENST00000598558 KIF1AQ12756 1690 aa20.02■□□□□ 0.8
SHKBP1-217ENST00000598558 DISP3Q9P2K9 1392 aa20.01■□□□□ 0.79
SHKBP1-217ENST00000598558 NUTM2BA6NNL0 878 aaPredicted RBP20■□□□□ 0.79
SHKBP1-217ENST00000598558 NUTM2EB1AL46 878 aaPredicted RBP20■□□□□ 0.79
SHKBP1-217ENST00000598558 NUTM2AQ8IVF1 878 aaPredicted RBP20■□□□□ 0.79
SHKBP1-217ENST00000598558 LRP6O75581 1613 aa20■□□□□ 0.79
SHKBP1-217ENST00000598558 TOPAZ1Q8N9V7 1692 aa20■□□□□ 0.79
SHKBP1-217ENST00000598558 SBNO1A3KN83 1393 aa19.99■□□□□ 0.79
SHKBP1-217ENST00000598558 SPATA31A6Q5VVP1 1343 aa19.99■□□□□ 0.79
SHKBP1-217ENST00000598558 SLC12A5Q9H2X9 1139 aa19.98■□□□□ 0.79
SHKBP1-217ENST00000598558 MED1Q15648 1581 aaPredicted RBP19.98■□□□□ 0.79
SHKBP1-217ENST00000598558 EIF4G2P78344 907 aaKnown RBP eCLIP19.97■□□□□ 0.79
SHKBP1-217ENST00000598558 SHPRHQ149N8 1683 aa19.97■□□□□ 0.79
SHKBP1-217ENST00000598558 CABLES1Q8TDN4 633 aa19.96■□□□□ 0.79
SHKBP1-217ENST00000598558 PUS7Q96PZ0 661 aaKnown RBP19.96■□□□□ 0.79
SHKBP1-217ENST00000598558 ATAD2Q6PL18 1390 aa19.95■□□□□ 0.79
SHKBP1-217ENST00000598558 TNS3Q68CZ2 1445 aa19.95■□□□□ 0.78
SHKBP1-217ENST00000598558 PLEKHG5O94827 1062 aa19.95■□□□□ 0.78
SHKBP1-217ENST00000598558 LMOD2Q6P5Q4 547 aa19.95■□□□□ 0.78
SHKBP1-217ENST00000598558 RGS17Q9UGC6 210 aaPredicted RBP19.95■□□□□ 0.78
SHKBP1-217ENST00000598558 PAK3O75914 559 aaPredicted RBP19.94■□□□□ 0.78
SHKBP1-217ENST00000598558 TMF1P82094 1093 aa19.94■□□□□ 0.78
SHKBP1-217ENST00000598558 C11orf95C9JLR9 678 aaPredicted RBP19.93■□□□□ 0.78
SHKBP1-217ENST00000598558 TMC1Q8TDI8 760 aa19.93■□□□□ 0.78
SHKBP1-217ENST00000598558 TRPM3Q9HCF6 1732 aaPredicted RBP19.93■□□□□ 0.78
SHKBP1-217ENST00000598558 CPSF1Q10570 1443 aaKnown RBP19.93■□□□□ 0.78
SHKBP1-217ENST00000598558 CD163L1Q9NR16 1453 aa19.92■□□□□ 0.78
SHKBP1-217ENST00000598558 NUTM2GQ5VZR2 741 aa19.92■□□□□ 0.78
SHKBP1-217ENST00000598558 ITSN1Q15811 1721 aa19.92■□□□□ 0.78
SHKBP1-217ENST00000598558 SSH2Q76I76 1423 aa19.92■□□□□ 0.78
SHKBP1-217ENST00000598558 SLC24A1O60721 1099 aa19.91■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms