RNA–Protein interactions for RNA: ENST00000598309.1

USHBP1-208, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 4

Gene USHBP1, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-208ENST00000598309 PLEKHH1Q9ULM0 1364 aa24.25■■□□□ 1.47
USHBP1-208ENST00000598309 DLC1Q96QB1 1528 aa24.25■■□□□ 1.47
USHBP1-208ENST00000598309 TRIM26Q12899 539 aaPredicted RBP24.22■■□□□ 1.47
USHBP1-208ENST00000598309 PHF23Q9BUL5 403 aaPredicted RBP24.22■■□□□ 1.47
USHBP1-208ENST00000598309 ILDR2Q71H61 639 aa24.21■■□□□ 1.47
USHBP1-208ENST00000598309 SHPRHQ149N8 1683 aa24.19■■□□□ 1.46
USHBP1-208ENST00000598309 SPATA31A6Q5VVP1 1343 aa24.18■■□□□ 1.46
USHBP1-208ENST00000598309 PRAM1Q96QH2 718 aa24.16■■□□□ 1.46
USHBP1-208ENST00000598309 ORAI2Q96SN7 254 aa24.15■■□□□ 1.46
USHBP1-208ENST00000598309 FMN2Q9NZ56 1722 aa24.15■■□□□ 1.46
USHBP1-208ENST00000598309 LRRC59Q96AG4 307 aaKnown RBP24.14■■□□□ 1.45
USHBP1-208ENST00000598309 KIAA1210Q9ULL0 1709 aa24.14■■□□□ 1.45
USHBP1-208ENST00000598309 ADGRB2O60241 1585 aa24.13■■□□□ 1.45
USHBP1-208ENST00000598309 SOS2Q07890 1332 aaPredicted RBP24.12■■□□□ 1.45
USHBP1-208ENST00000598309 POGKQ9P215 609 aa24.12■■□□□ 1.45
USHBP1-208ENST00000598309 ESCO1Q5FWF5 840 aa24.11■■□□□ 1.45
USHBP1-208ENST00000598309 DDX17Q92841 729 aaKnown RBP24.11■■□□□ 1.45
USHBP1-208ENST00000598309 TRAK1Q9UPV9 953 aa24.11■■□□□ 1.45
USHBP1-208ENST00000598309 LRP6O75581 1613 aa24.1■■□□□ 1.45
USHBP1-208ENST00000598309 NPHP3Q7Z494 1330 aa24.1■■□□□ 1.45
USHBP1-208ENST00000598309 PNPLA6Q8IY17 1366 aa24.08■■□□□ 1.45
USHBP1-208ENST00000598309 SAFB2Q14151 953 aaKnown RBP eCLIP24.08■■□□□ 1.45
USHBP1-208ENST00000598309 SIN3AQ96ST3 1273 aa24.08■■□□□ 1.45
USHBP1-208ENST00000598309 RGS17Q9UGC6 210 aaPredicted RBP24.08■■□□□ 1.45
USHBP1-208ENST00000598309 KIF1AQ12756 1690 aa24.07■■□□□ 1.44
USHBP1-208ENST00000598309 L3MBTL2Q969R5 705 aa24.06■■□□□ 1.44
USHBP1-208ENST00000598309 ANKARQ7Z5J8 1434 aa24.06■■□□□ 1.44
USHBP1-208ENST00000598309 ARHGEF28Q8N1W1 1705 aaKnown RBP24.06■■□□□ 1.44
USHBP1-208ENST00000598309 NUTM2FA1L443 756 aa24.05■■□□□ 1.44
USHBP1-208ENST00000598309 PXDNQ92626 1479 aa24.05■■□□□ 1.44
USHBP1-208ENST00000598309 EIF3AQ14152 1382 aaKnown RBP24.04■■□□□ 1.44
USHBP1-208ENST00000598309 SOCS7O14512 581 aa24.03■■□□□ 1.44
USHBP1-208ENST00000598309 FOXO3O43524 673 aa24.01■■□□□ 1.43
USHBP1-208ENST00000598309 NEUROD1Q13562 356 aa24.01■■□□□ 1.43
USHBP1-208ENST00000598309 MEX3CQ5U5Q3 659 aaKnown RBP24.01■■□□□ 1.43
USHBP1-208ENST00000598309 NBPF1Q3BBV0 1214 aa24■■□□□ 1.43
USHBP1-208ENST00000598309 MINK1Q8N4C8 1332 aaPredicted RBP24■■□□□ 1.43
USHBP1-208ENST00000598309 PHF8Q9UPP1 1060 aa23.99■■□□□ 1.43
USHBP1-208ENST00000598309 TULP4Q9NRJ4 1543 aa23.99■■□□□ 1.43
USHBP1-208ENST00000598309 USP32Q8NFA0 1604 aa23.99■■□□□ 1.43
USHBP1-208ENST00000598309 COL22A1Q8NFW1 1626 aaPredicted RBP23.99■■□□□ 1.43
USHBP1-208ENST00000598309 NUTM2BA6NNL0 878 aaPredicted RBP23.98■■□□□ 1.43
USHBP1-208ENST00000598309 NUTM2EB1AL46 878 aaPredicted RBP23.98■■□□□ 1.43
USHBP1-208ENST00000598309 NUTM2AQ8IVF1 878 aaPredicted RBP23.98■■□□□ 1.43
USHBP1-208ENST00000598309 HIRIP3Q9BW71 556 aaPredicted RBP23.98■■□□□ 1.43
USHBP1-208ENST00000598309 WASLO00401 505 aaPredicted RBP23.97■■□□□ 1.43
USHBP1-208ENST00000598309 RGPD8O14715 1765 aaPredicted RBP23.96■■□□□ 1.43
USHBP1-208ENST00000598309 POTEAQ6S8J7 498 aa23.95■■□□□ 1.42
USHBP1-208ENST00000598309 XPCQ01831 940 aaPredicted RBP23.94■■□□□ 1.42
USHBP1-208ENST00000598309 TRPM1Q7Z4N2 1603 aa23.94■■□□□ 1.42
USHBP1-208ENST00000598309 ZNF772Q68DY9 489 aaPredicted RBP23.93■■□□□ 1.42
USHBP1-208ENST00000598309 PRR36Q9H6K5 1346 aa23.92■■□□□ 1.42
USHBP1-208ENST00000598309 SPATA31A3Q5VYP0 1347 aa23.91■■□□□ 1.42
USHBP1-208ENST00000598309 KRT28Q7Z3Y7 464 aa23.91■■□□□ 1.42
USHBP1-208ENST00000598309 SBNO1A3KN83 1393 aa23.91■■□□□ 1.42
USHBP1-208ENST00000598309 ATP7BP35670 1465 aa23.9■■□□□ 1.42
USHBP1-208ENST00000598309 PSME1Q06323 249 aa23.9■■□□□ 1.42
USHBP1-208ENST00000598309 TNS3Q68CZ2 1445 aa23.9■■□□□ 1.42
USHBP1-208ENST00000598309 TONSLQ96HA7 1378 aa23.9■■□□□ 1.42
USHBP1-208ENST00000598309 CENPJQ9HC77 1338 aaPredicted RBP23.89■■□□□ 1.42
USHBP1-208ENST00000598309 ROCK2O75116 1388 aaKnown RBP23.89■■□□□ 1.41
USHBP1-208ENST00000598309 AFF2P51816 1311 aa23.87■■□□□ 1.41
USHBP1-208ENST00000598309 GPRASP1Q5JY77 1395 aa23.87■■□□□ 1.41
USHBP1-208ENST00000598309 ITSN1Q15811 1721 aa23.87■■□□□ 1.41
USHBP1-208ENST00000598309 PMFBP1Q8TBY8 1022 aa23.86■■□□□ 1.41
USHBP1-208ENST00000598309 C8orf37Q96NL8 207 aa23.86■■□□□ 1.41
USHBP1-208ENST00000598309 ADAMTS2O95450 1211 aa23.85■■□□□ 1.41
USHBP1-208ENST00000598309 NUDT16Q96DE0 195 aaKnown RBP23.85■■□□□ 1.41
USHBP1-208ENST00000598309 CDK19Q9BWU1 502 aa23.85■■□□□ 1.41
USHBP1-208ENST00000598309 ARHGEF10O15013 1369 aa23.84■■□□□ 1.41
USHBP1-208ENST00000598309 NBPF8Q3BBV2 869 aa23.84■■□□□ 1.41
USHBP1-208ENST00000598309 QRICH2Q9H0J4 1663 aa23.83■■□□□ 1.41
USHBP1-208ENST00000598309 TOPAZ1Q8N9V7 1692 aa23.82■■□□□ 1.4
USHBP1-208ENST00000598309 TRPM3Q9HCF6 1732 aaPredicted RBP23.81■■□□□ 1.4
USHBP1-208ENST00000598309 NGLY1Q96IV0 654 aa23.81■■□□□ 1.4
USHBP1-208ENST00000598309 RALGAPBQ86X10 1494 aa23.81■■□□□ 1.4
USHBP1-208ENST00000598309 NGDNQ8NEJ9 315 aaKnown RBP23.8■■□□□ 1.4
USHBP1-208ENST00000598309 CCDC61Q9Y6R9 512 aa23.8■■□□□ 1.4
USHBP1-208ENST00000598309 FNBP4Q8N3X1 1017 aaPredicted RBP23.78■■□□□ 1.4
USHBP1-208ENST00000598309 MARF1Q9Y4F3 1742 aaKnown RBP23.78■■□□□ 1.4
USHBP1-208ENST00000598309 POLR3AO14802 1390 aaPredicted RBP23.78■■□□□ 1.4
USHBP1-208ENST00000598309 CDK12Q9NYV4 1490 aaPredicted RBP23.77■■□□□ 1.4
USHBP1-208ENST00000598309 PLEKHG3A1L390 1219 aa23.76■■□□□ 1.39
USHBP1-208ENST00000598309 SRPK2P78362 688 aaKnown RBP23.76■■□□□ 1.39
USHBP1-208ENST00000598309 ALS2Q96Q42 1657 aa23.76■■□□□ 1.39
USHBP1-208ENST00000598309 RXRBP28702 533 aa23.75■■□□□ 1.39
USHBP1-208ENST00000598309 CLSPNQ9HAW4 1339 aa23.75■■□□□ 1.39
USHBP1-208ENST00000598309 LMOD2Q6P5Q4 547 aa23.74■■□□□ 1.39
USHBP1-208ENST00000598309 USP21Q9UK80 565 aa23.74■■□□□ 1.39
USHBP1-208ENST00000598309 ABCA3Q99758 1704 aa23.73■■□□□ 1.39
USHBP1-208ENST00000598309 CARD11Q9BXL7 1154 aa23.73■■□□□ 1.39
USHBP1-208ENST00000598309 EVC2Q86UK5 1308 aa23.73■■□□□ 1.39
USHBP1-208ENST00000598309 SBNO2Q9Y2G9 1366 aa23.73■■□□□ 1.39
USHBP1-208ENST00000598309 PCGF6Q9BYE7 350 aa23.72■■□□□ 1.39
USHBP1-208ENST00000598309 QTRT2Q9H974 415 aaKnown RBP23.72■■□□□ 1.39
USHBP1-208ENST00000598309 CABP2Q9NPB3 220 aa23.72■■□□□ 1.39
USHBP1-208ENST00000598309 ACEP12821 1306 aa23.72■■□□□ 1.39
USHBP1-208ENST00000598309 PPIP5K1Q6PFW1 1433 aa23.72■■□□□ 1.39
USHBP1-208ENST00000598309 HAP1P54257 671 aaPredicted RBP23.71■■□□□ 1.39
USHBP1-208ENST00000598309 RBM6P78332 1123 aaKnown RBP23.71■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms