RNA–Protein interactions for RNA: ENST00000590830.5

MBD3-208, Transcript of methyl-CpG binding domain protein 3, human

TSL 1 (best)

Gene MBD3, Length 1,035 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MBD3-208	ENST00000590830	AHDC1	Q5TGY3	1603 aa	Predicted RBP	32.4	■■■□□ 2.78
MBD3-208	ENST00000590830	NEUROD1	Q13562	356 aa		32.4	■■■□□ 2.78
MBD3-208	ENST00000590830	DDX17	Q92841	729 aa	Known RBP	32.4	■■■□□ 2.78
MBD3-208	ENST00000590830	L3MBTL2	Q969R5	705 aa		32.4	■■■□□ 2.78
MBD3-208	ENST00000590830	TRAK1	Q9UPV9	953 aa		32.4	■■■□□ 2.78
MBD3-208	ENST00000590830	COL16A1	Q07092	1604 aa	Predicted RBP	32.39	■■■□□ 2.78
MBD3-208	ENST00000590830	SAFB2	Q14151	953 aa	Known RBP eCLIP	32.37	■■■□□ 2.77
MBD3-208	ENST00000590830	CDC42BPG	Q6DT37	1551 aa		32.36	■■■□□ 2.77
MBD3-208	ENST00000590830	ILDR2	Q71H61	639 aa		32.35	■■■□□ 2.77
MBD3-208	ENST00000590830	DLC1	Q96QB1	1528 aa		32.35	■■■□□ 2.77
MBD3-208	ENST00000590830	JCAD	Q9P266	1359 aa		32.34	■■■□□ 2.77
MBD3-208	ENST00000590830	NUTM2F	A1L443	756 aa		32.33	■■■□□ 2.77
MBD3-208	ENST00000590830	POGK	Q9P215	609 aa		32.33	■■■□□ 2.77
MBD3-208	ENST00000590830	NBPF1	Q3BBV0	1214 aa		32.32	■■■□□ 2.76
MBD3-208	ENST00000590830	ESCO1	Q5FWF5	840 aa		32.29	■■■□□ 2.76
MBD3-208	ENST00000590830	NHSL1	Q5SYE7	1610 aa		32.28	■■■□□ 2.76
MBD3-208	ENST00000590830	LRRC59	Q96AG4	307 aa	Known RBP	32.23	■■■□□ 2.75
MBD3-208	ENST00000590830	SOS2	Q07890	1332 aa	Predicted RBP	32.23	■■■□□ 2.75
MBD3-208	ENST00000590830	PHF23	Q9BUL5	403 aa	Predicted RBP	32.22	■■■□□ 2.75
MBD3-208	ENST00000590830	HIRIP3	Q9BW71	556 aa	Predicted RBP	32.22	■■■□□ 2.75
MBD3-208	ENST00000590830	RGS17	Q9UGC6	210 aa	Predicted RBP	32.22	■■■□□ 2.75
MBD3-208	ENST00000590830	MINK1	Q8N4C8	1332 aa	Predicted RBP	32.22	■■■□□ 2.75
MBD3-208	ENST00000590830	FMN2	Q9NZ56	1722 aa		32.21	■■■□□ 2.75
MBD3-208	ENST00000590830	KIAA1210	Q9ULL0	1709 aa		32.21	■■■□□ 2.75
MBD3-208	ENST00000590830	FOXO3	O43524	673 aa		32.19	■■■□□ 2.74
MBD3-208	ENST00000590830	SPATA31A6	Q5VVP1	1343 aa		32.19	■■■□□ 2.74
MBD3-208	ENST00000590830	LRP6	O75581	1613 aa		32.16	■■■□□ 2.74
MBD3-208	ENST00000590830	PCGF6	Q9BYE7	350 aa		32.16	■■■□□ 2.74
MBD3-208	ENST00000590830	SHPRH	Q149N8	1683 aa		32.15	■■■□□ 2.74
MBD3-208	ENST00000590830	NBPF8	Q3BBV2	869 aa		32.15	■■■□□ 2.74
MBD3-208	ENST00000590830	XPC	Q01831	940 aa	Predicted RBP	32.14	■■■□□ 2.74
MBD3-208	ENST00000590830	NPHP3	Q7Z494	1330 aa		32.14	■■■□□ 2.74
MBD3-208	ENST00000590830	PNPLA6	Q8IY17	1366 aa		32.14	■■■□□ 2.74
MBD3-208	ENST00000590830	ADGRB2	O60241	1585 aa		32.14	■■■□□ 2.74
MBD3-208	ENST00000590830	ARHGEF28	Q8N1W1	1705 aa	Known RBP	32.14	■■■□□ 2.74
MBD3-208	ENST00000590830	WASL	O00401	505 aa	Predicted RBP	32.13	■■■□□ 2.73
MBD3-208	ENST00000590830	NUTM2B	A6NNL0	878 aa	Predicted RBP	32.11	■■■□□ 2.73
MBD3-208	ENST00000590830	NUTM2E	B1AL46	878 aa	Predicted RBP	32.11	■■■□□ 2.73
MBD3-208	ENST00000590830	NUTM2A	Q8IVF1	878 aa	Predicted RBP	32.11	■■■□□ 2.73
MBD3-208	ENST00000590830	PHF8	Q9UPP1	1060 aa		32.11	■■■□□ 2.73
MBD3-208	ENST00000590830	PXDN	Q92626	1479 aa		32.1	■■■□□ 2.73
MBD3-208	ENST00000590830	PRR36	Q9H6K5	1346 aa		32.1	■■■□□ 2.73
MBD3-208	ENST00000590830	ANKAR	Q7Z5J8	1434 aa		32.08	■■■□□ 2.73
MBD3-208	ENST00000590830	USP32	Q8NFA0	1604 aa		32.08	■■■□□ 2.73
MBD3-208	ENST00000590830	RGPD8	O14715	1765 aa	Predicted RBP	32.07	■■■□□ 2.72
MBD3-208	ENST00000590830	TONSL	Q96HA7	1378 aa		32.05	■■■□□ 2.72
MBD3-208	ENST00000590830	TRPM1	Q7Z4N2	1603 aa		32.04	■■■□□ 2.72
MBD3-208	ENST00000590830	POTEA	Q6S8J7	498 aa		32.04	■■■□□ 2.72
MBD3-208	ENST00000590830	KRT28	Q7Z3Y7	464 aa		32.04	■■■□□ 2.72
MBD3-208	ENST00000590830	PMFBP1	Q8TBY8	1022 aa		32.04	■■■□□ 2.72
MBD3-208	ENST00000590830	MEX3C	Q5U5Q3	659 aa	Known RBP	32.03	■■■□□ 2.72
MBD3-208	ENST00000590830	CDK19	Q9BWU1	502 aa		32.03	■■■□□ 2.72
MBD3-208	ENST00000590830	KIF1A	Q12756	1690 aa		32.01	■■■□□ 2.71
MBD3-208	ENST00000590830	CENPJ	Q9HC77	1338 aa	Predicted RBP	32	■■■□□ 2.71
MBD3-208	ENST00000590830	TULP4	Q9NRJ4	1543 aa		32	■■■□□ 2.71
MBD3-208	ENST00000590830	ROCK2	O75116	1388 aa	Known RBP	32	■■■□□ 2.71
MBD3-208	ENST00000590830	EIF3A	Q14152	1382 aa	Known RBP	31.99	■■■□□ 2.71
MBD3-208	ENST00000590830	NUDT16	Q96DE0	195 aa	Known RBP	31.99	■■■□□ 2.71
MBD3-208	ENST00000590830	SPATA31A3	Q5VYP0	1347 aa		31.98	■■■□□ 2.71
MBD3-208	ENST00000590830	PSME1	Q06323	249 aa		31.96	■■■□□ 2.71
MBD3-208	ENST00000590830	GPRASP1	Q5JY77	1395 aa		31.95	■■■□□ 2.71
MBD3-208	ENST00000590830	ADAMTS2	O95450	1211 aa		31.94	■■■□□ 2.7
MBD3-208	ENST00000590830	ATP7B	P35670	1465 aa		31.93	■■■□□ 2.7
MBD3-208	ENST00000590830	SOCS7	O14512	581 aa		31.92	■■■□□ 2.7
MBD3-208	ENST00000590830	COL22A1	Q8NFW1	1626 aa	Predicted RBP	31.91	■■■□□ 2.7
MBD3-208	ENST00000590830	C8orf37	Q96NL8	207 aa		31.9	■■■□□ 2.7
MBD3-208	ENST00000590830	SBNO1	A3KN83	1393 aa		31.9	■■■□□ 2.7
MBD3-208	ENST00000590830	NGDN	Q8NEJ9	315 aa	Known RBP	31.88	■■■□□ 2.69
MBD3-208	ENST00000590830	CARD11	Q9BXL7	1154 aa		31.88	■■■□□ 2.69
MBD3-208	ENST00000590830	CABP2	Q9NPB3	220 aa		31.88	■■■□□ 2.69
MBD3-208	ENST00000590830	AFF2	P51816	1311 aa		31.88	■■■□□ 2.69
MBD3-208	ENST00000590830	CCDC61	Q9Y6R9	512 aa		31.87	■■■□□ 2.69
MBD3-208	ENST00000590830	RALGAPB	Q86X10	1494 aa		31.86	■■■□□ 2.69
MBD3-208	ENST00000590830	TNS3	Q68CZ2	1445 aa		31.86	■■■□□ 2.69
MBD3-208	ENST00000590830	ZNF772	Q68DY9	489 aa	Predicted RBP	31.86	■■■□□ 2.69
MBD3-208	ENST00000590830	SRPK2	P78362	688 aa	Known RBP	31.85	■■■□□ 2.69
MBD3-208	ENST00000590830	QRICH2	Q9H0J4	1663 aa		31.85	■■■□□ 2.69
MBD3-208	ENST00000590830	PLEKHG3	A1L390	1219 aa		31.84	■■■□□ 2.69
MBD3-208	ENST00000590830	NGLY1	Q96IV0	654 aa		31.83	■■■□□ 2.69
MBD3-208	ENST00000590830	CLSPN	Q9HAW4	1339 aa		31.82	■■■□□ 2.68
MBD3-208	ENST00000590830	LMOD2	Q6P5Q4	547 aa		31.82	■■■□□ 2.68
MBD3-208	ENST00000590830	CABLES1	Q8TDN4	633 aa		31.82	■■■□□ 2.68
MBD3-208	ENST00000590830	ACE	P12821	1306 aa		31.8	■■■□□ 2.68
MBD3-208	ENST00000590830	POLR3A	O14802	1390 aa	Predicted RBP	31.79	■■■□□ 2.68
MBD3-208	ENST00000590830	TRPM3	Q9HCF6	1732 aa	Predicted RBP	31.78	■■■□□ 2.68
MBD3-208	ENST00000590830	PLEKHG5	O94827	1062 aa		31.78	■■■□□ 2.68
MBD3-208	ENST00000590830	EVC2	Q86UK5	1308 aa		31.77	■■■□□ 2.68
MBD3-208	ENST00000590830	FNBP4	Q8N3X1	1017 aa	Predicted RBP	31.77	■■■□□ 2.68
MBD3-208	ENST00000590830	ARHGEF10	O15013	1369 aa		31.77	■■■□□ 2.68
MBD3-208	ENST00000590830	TOPAZ1	Q8N9V7	1692 aa		31.76	■■■□□ 2.68
MBD3-208	ENST00000590830	ITSN1	Q15811	1721 aa		31.75	■■■□□ 2.67
MBD3-208	ENST00000590830	PPIP5K1	Q6PFW1	1433 aa		31.75	■■■□□ 2.67
MBD3-208	ENST00000590830	PAK3	O75914	559 aa	Predicted RBP	31.74	■■■□□ 2.67
MBD3-208	ENST00000590830	CABP1	Q9NZU7	370 aa		31.74	■■■□□ 2.67
MBD3-208	ENST00000590830	QTRT2	Q9H974	415 aa	Known RBP	31.73	■■■□□ 2.67
MBD3-208	ENST00000590830	TIMELESS	Q9UNS1	1208 aa		31.73	■■■□□ 2.67
MBD3-208	ENST00000590830	CCER1	Q8TC90	406 aa	Predicted RBP	31.72	■■■□□ 2.67
MBD3-208	ENST00000590830	USP21	Q9UK80	565 aa		31.72	■■■□□ 2.67
MBD3-208	ENST00000590830	RXRB	P28702	533 aa		31.7	■■■□□ 2.67
MBD3-208	ENST00000590830	ALS2	Q96Q42	1657 aa		31.7	■■■□□ 2.66

Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms