RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 TECPR2O15040 1411 aa15.62■□□□□ 0.09
CLIP3-203ENST00000586457 PRAG1Q86YV5 1406 aa15.61■□□□□ 0.09
CLIP3-203ENST00000586457 NALCNQ8IZF0 1738 aa15.61■□□□□ 0.09
CLIP3-203ENST00000586457 L3MBTL2Q969R5 705 aa15.61■□□□□ 0.09
CLIP3-203ENST00000586457 ORAI2Q96SN7 254 aa15.61■□□□□ 0.09
CLIP3-203ENST00000586457 C1orf167Q5SNV9 1468 aa15.6■□□□□ 0.09
CLIP3-203ENST00000586457 PLEKHH1Q9ULM0 1364 aa15.59■□□□□ 0.09
CLIP3-203ENST00000586457 ASXL1Q8IXJ9 1541 aa15.58■□□□□ 0.09
CLIP3-203ENST00000586457 NUTM2BA6NNL0 878 aaPredicted RBP15.58■□□□□ 0.08
CLIP3-203ENST00000586457 NUTM2EB1AL46 878 aaPredicted RBP15.58■□□□□ 0.08
CLIP3-203ENST00000586457 NUTM2AQ8IVF1 878 aaPredicted RBP15.58■□□□□ 0.08
CLIP3-203ENST00000586457 PCGF6Q9BYE7 350 aa15.58■□□□□ 0.08
CLIP3-203ENST00000586457 MED1Q15648 1581 aaPredicted RBP15.58■□□□□ 0.08
CLIP3-203ENST00000586457 DDX17Q92841 729 aaKnown RBP15.57■□□□□ 0.08
CLIP3-203ENST00000586457 HIRIP3Q9BW71 556 aaPredicted RBP15.57■□□□□ 0.08
CLIP3-203ENST00000586457 SPATA31A6Q5VVP1 1343 aa15.57■□□□□ 0.08
CLIP3-203ENST00000586457 MINK1Q8N4C8 1332 aaPredicted RBP15.57■□□□□ 0.08
CLIP3-203ENST00000586457 KNDC1Q76NI1 1749 aa15.57■□□□□ 0.08
CLIP3-203ENST00000586457 FOXO3O43524 673 aa15.56■□□□□ 0.08
CLIP3-203ENST00000586457 NPHP3Q7Z494 1330 aa15.56■□□□□ 0.08
CLIP3-203ENST00000586457 TONSLQ96HA7 1378 aa15.56■□□□□ 0.08
CLIP3-203ENST00000586457 AHDC1Q5TGY3 1603 aaPredicted RBP15.55■□□□□ 0.08
CLIP3-203ENST00000586457 CDC42BPGQ6DT37 1551 aa15.54■□□□□ 0.08
CLIP3-203ENST00000586457 PSME1Q06323 249 aa15.54■□□□□ 0.08
CLIP3-203ENST00000586457 DLC1Q96QB1 1528 aa15.53■□□□□ 0.08
CLIP3-203ENST00000586457 EIF3AQ14152 1382 aaKnown RBP15.53■□□□□ 0.08
CLIP3-203ENST00000586457 NBPF1Q3BBV0 1214 aa15.53■□□□□ 0.08
CLIP3-203ENST00000586457 PHF8Q9UPP1 1060 aa15.53■□□□□ 0.08
CLIP3-203ENST00000586457 COL16A1Q07092 1604 aaPredicted RBP15.52■□□□□ 0.08
CLIP3-203ENST00000586457 ADGRB1O14514 1584 aa15.51■□□□□ 0.07
CLIP3-203ENST00000586457 WASLO00401 505 aaPredicted RBP15.51■□□□□ 0.07
CLIP3-203ENST00000586457 XPCQ01831 940 aaPredicted RBP15.51■□□□□ 0.07
CLIP3-203ENST00000586457 LMOD2Q6P5Q4 547 aa15.5■□□□□ 0.07
CLIP3-203ENST00000586457 ILDR2Q71H61 639 aa15.5■□□□□ 0.07
CLIP3-203ENST00000586457 KRT28Q7Z3Y7 464 aa15.5■□□□□ 0.07
CLIP3-203ENST00000586457 SOS2Q07890 1332 aaPredicted RBP15.49■□□□□ 0.07
CLIP3-203ENST00000586457 HAP1P54257 671 aaPredicted RBP15.49■□□□□ 0.07
CLIP3-203ENST00000586457 PMFBP1Q8TBY8 1022 aa15.49■□□□□ 0.07
CLIP3-203ENST00000586457 ROCK2O75116 1388 aaKnown RBP15.49■□□□□ 0.07
CLIP3-203ENST00000586457 KIAA1210Q9ULL0 1709 aa15.48■□□□□ 0.07
CLIP3-203ENST00000586457 NHSL1Q5SYE7 1610 aa15.48■□□□□ 0.07
CLIP3-203ENST00000586457 ZNF772Q68DY9 489 aaPredicted RBP15.48■□□□□ 0.07
CLIP3-203ENST00000586457 NGDNQ8NEJ9 315 aaKnown RBP15.48■□□□□ 0.07
CLIP3-203ENST00000586457 CENPJQ9HC77 1338 aaPredicted RBP15.47■□□□□ 0.07
CLIP3-203ENST00000586457 ADAMTS2O95450 1211 aa15.47■□□□□ 0.07
CLIP3-203ENST00000586457 SRPK2P78362 688 aaKnown RBP15.47■□□□□ 0.07
CLIP3-203ENST00000586457 CDK19Q9BWU1 502 aa15.47■□□□□ 0.07
CLIP3-203ENST00000586457 FMN2Q9NZ56 1722 aa15.46■□□□□ 0.07
CLIP3-203ENST00000586457 NGLY1Q96IV0 654 aa15.46■□□□□ 0.07
CLIP3-203ENST00000586457 C8orf37Q96NL8 207 aa15.46■□□□□ 0.07
CLIP3-203ENST00000586457 GPRASP1Q5JY77 1395 aa15.46■□□□□ 0.07
CLIP3-203ENST00000586457 SHPRHQ149N8 1683 aa15.45■□□□□ 0.06
CLIP3-203ENST00000586457 ANKARQ7Z5J8 1434 aa15.45■□□□□ 0.06
CLIP3-203ENST00000586457 PLEKHG5O94827 1062 aa15.45■□□□□ 0.06
CLIP3-203ENST00000586457 NUDT16Q96DE0 195 aaKnown RBP15.45■□□□□ 0.06
CLIP3-203ENST00000586457 PNPLA6Q8IY17 1366 aa15.45■□□□□ 0.06
CLIP3-203ENST00000586457 PAK3O75914 559 aaPredicted RBP15.44■□□□□ 0.06
CLIP3-203ENST00000586457 CCER1Q8TC90 406 aaPredicted RBP15.44■□□□□ 0.06
CLIP3-203ENST00000586457 CARD11Q9BXL7 1154 aa15.44■□□□□ 0.06
CLIP3-203ENST00000586457 KIF1AQ12756 1690 aa15.43■□□□□ 0.06
CLIP3-203ENST00000586457 SOCS7O14512 581 aa15.42■□□□□ 0.06
CLIP3-203ENST00000586457 CCDC61Q9Y6R9 512 aa15.42■□□□□ 0.06
CLIP3-203ENST00000586457 ARHGEF28Q8N1W1 1705 aaKnown RBP15.41■□□□□ 0.06
CLIP3-203ENST00000586457 NBPF8Q3BBV2 869 aa15.41■□□□□ 0.06
CLIP3-203ENST00000586457 RGS17Q9UGC6 210 aaPredicted RBP15.41■□□□□ 0.06
CLIP3-203ENST00000586457 SPATA31A3Q5VYP0 1347 aa15.41■□□□□ 0.06
CLIP3-203ENST00000586457 EVC2Q86UK5 1308 aa15.41■□□□□ 0.06
CLIP3-203ENST00000586457 ADGRB2O60241 1585 aa15.41■□□□□ 0.06
CLIP3-203ENST00000586457 TULP4Q9NRJ4 1543 aa15.4■□□□□ 0.06
CLIP3-203ENST00000586457 AFF2P51816 1311 aa15.4■□□□□ 0.06
CLIP3-203ENST00000586457 RGPD8O14715 1765 aaPredicted RBP15.39■□□□□ 0.05
CLIP3-203ENST00000586457 POTEAQ6S8J7 498 aa15.39■□□□□ 0.05
CLIP3-203ENST00000586457 CABP2Q9NPB3 220 aa15.39■□□□□ 0.05
CLIP3-203ENST00000586457 CLSPNQ9HAW4 1339 aa15.39■□□□□ 0.05
CLIP3-203ENST00000586457 PXDNQ92626 1479 aa15.39■□□□□ 0.05
CLIP3-203ENST00000586457 LRP6O75581 1613 aa15.39■□□□□ 0.05
CLIP3-203ENST00000586457 RXRBP28702 533 aa15.38■□□□□ 0.05
CLIP3-203ENST00000586457 TIMELESSQ9UNS1 1208 aa15.38■□□□□ 0.05
CLIP3-203ENST00000586457 PRR36Q9H6K5 1346 aa15.38■□□□□ 0.05
CLIP3-203ENST00000586457 SBNO1A3KN83 1393 aa15.37■□□□□ 0.05
CLIP3-203ENST00000586457 ARHGEF10O15013 1369 aa15.37■□□□□ 0.05
CLIP3-203ENST00000586457 TRPM1Q7Z4N2 1603 aa15.37■□□□□ 0.05
CLIP3-203ENST00000586457 QTRT2Q9H974 415 aaKnown RBP15.37■□□□□ 0.05
CLIP3-203ENST00000586457 USP21Q9UK80 565 aa15.37■□□□□ 0.05
CLIP3-203ENST00000586457 TNS3Q68CZ2 1445 aa15.35■□□□□ 0.05
CLIP3-203ENST00000586457 SLC24A1O60721 1099 aa15.35■□□□□ 0.05
CLIP3-203ENST00000586457 ACEP12821 1306 aa15.35■□□□□ 0.05
CLIP3-203ENST00000586457 CABLES1Q8TDN4 633 aa15.34■□□□□ 0.05
CLIP3-203ENST00000586457 USP32Q8NFA0 1604 aa15.33■□□□□ 0.04
CLIP3-203ENST00000586457 QRICH2Q9H0J4 1663 aa15.33■□□□□ 0.04
CLIP3-203ENST00000586457 PLEKHG3A1L390 1219 aa15.33■□□□□ 0.04
CLIP3-203ENST00000586457 CABP1Q9NZU7 370 aa15.33■□□□□ 0.04
CLIP3-203ENST00000586457 ITSN1Q15811 1721 aa15.33■□□□□ 0.04
CLIP3-203ENST00000586457 ABTB2Q8N961 1025 aa15.32■□□□□ 0.04
CLIP3-203ENST00000586457 TRPC5Q9UL62 973 aaPredicted RBP15.32■□□□□ 0.04
CLIP3-203ENST00000586457 PPIP5K1Q6PFW1 1433 aa15.32■□□□□ 0.04
CLIP3-203ENST00000586457 RBM6P78332 1123 aaKnown RBP15.31■□□□□ 0.04
CLIP3-203ENST00000586457 ATP7BP35670 1465 aa15.31■□□□□ 0.04
CLIP3-203ENST00000586457 RALGAPBQ86X10 1494 aa15.3■□□□□ 0.04
CLIP3-203ENST00000586457 FNBP4Q8N3X1 1017 aaPredicted RBP15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms