RNA–Protein interactions for RNA: ENST00000586407.1

LIG3-208, Transcript of DNA ligase 3, human

TSL 5

Gene LIG3, Length 815 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LIG3-208	ENST00000586407	DHX57	Q6P158	1386 aa	Known RBP	41.09	■■■■■ 4.17
LIG3-208	ENST00000586407	ORAI2	Q96SN7	254 aa		41.06	■■■■■ 4.16
LIG3-208	ENST00000586407	SHPRH	Q149N8	1683 aa		41.06	■■■■■ 4.16
LIG3-208	ENST00000586407	ADGRB1	O14514	1584 aa		41.03	■■■■■ 4.16
LIG3-208	ENST00000586407	RGS17	Q9UGC6	210 aa	Predicted RBP	41.01	■■■■■ 4.16
LIG3-208	ENST00000586407	LRP6	O75581	1613 aa		41	■■■■■ 4.15
LIG3-208	ENST00000586407	NUTM2F	A1L443	756 aa		40.99	■■■■■ 4.15
LIG3-208	ENST00000586407	FMN2	Q9NZ56	1722 aa		40.96	■■■■■ 4.15
LIG3-208	ENST00000586407	SAFB2	Q14151	953 aa	Known RBP eCLIP	40.95	■■■■■ 4.15
LIG3-208	ENST00000586407	SOCS7	O14512	581 aa		40.92	■■■■■ 4.14
LIG3-208	ENST00000586407	PRAM1	Q96QH2	718 aa		40.92	■■■■■ 4.14
LIG3-208	ENST00000586407	DLC1	Q96QB1	1528 aa		40.91	■■■■■ 4.14
LIG3-208	ENST00000586407	SPATA31A6	Q5VVP1	1343 aa		40.91	■■■■■ 4.14
LIG3-208	ENST00000586407	SIRT1	Q96EB6	747 aa		40.9	■■■■■ 4.14
LIG3-208	ENST00000586407	ESCO1	Q5FWF5	840 aa		40.89	■■■■■ 4.14
LIG3-208	ENST00000586407	TRAK1	Q9UPV9	953 aa		40.89	■■■■■ 4.14
LIG3-208	ENST00000586407	RGPD8	O14715	1765 aa	Predicted RBP	40.87	■■■■■ 4.13
LIG3-208	ENST00000586407	NUTM2B	A6NNL0	878 aa	Predicted RBP	40.87	■■■■■ 4.13
LIG3-208	ENST00000586407	NUTM2E	B1AL46	878 aa	Predicted RBP	40.87	■■■■■ 4.13
LIG3-208	ENST00000586407	NUTM2A	Q8IVF1	878 aa	Predicted RBP	40.87	■■■■■ 4.13
LIG3-208	ENST00000586407	LRRC59	Q96AG4	307 aa	Known RBP	40.85	■■■■■ 4.13
LIG3-208	ENST00000586407	STAC3	Q96MF2	364 aa		40.85	■■■■■ 4.13
LIG3-208	ENST00000586407	POGK	Q9P215	609 aa		40.84	■■■■■ 4.13
LIG3-208	ENST00000586407	PNPLA6	Q8IY17	1366 aa		40.84	■■■■■ 4.13
LIG3-208	ENST00000586407	MEX3C	Q5U5Q3	659 aa	Known RBP	40.81	■■■■■ 4.12
LIG3-208	ENST00000586407	POTEA	Q6S8J7	498 aa		40.81	■■■■■ 4.12
LIG3-208	ENST00000586407	SIN3A	Q96ST3	1273 aa		40.81	■■■■■ 4.12
LIG3-208	ENST00000586407	SOS2	Q07890	1332 aa	Predicted RBP	40.81	■■■■■ 4.12
LIG3-208	ENST00000586407	ARHGEF28	Q8N1W1	1705 aa	Known RBP	40.79	■■■■■ 4.12
LIG3-208	ENST00000586407	XPC	Q01831	940 aa	Predicted RBP	40.78	■■■■■ 4.12
LIG3-208	ENST00000586407	FOXO3	O43524	673 aa		40.76	■■■■■ 4.12
LIG3-208	ENST00000586407	KIAA1210	Q9ULL0	1709 aa		40.75	■■■■■ 4.11
LIG3-208	ENST00000586407	ADGRB2	O60241	1585 aa		40.74	■■■■■ 4.11
LIG3-208	ENST00000586407	HIRIP3	Q9BW71	556 aa	Predicted RBP	40.74	■■■■■ 4.11
LIG3-208	ENST00000586407	PXDN	Q92626	1479 aa		40.74	■■■■■ 4.11
LIG3-208	ENST00000586407	MINK1	Q8N4C8	1332 aa	Predicted RBP	40.73	■■■■■ 4.11
LIG3-208	ENST00000586407	KIF1A	Q12756	1690 aa		40.72	■■■■■ 4.11
LIG3-208	ENST00000586407	NPHP3	Q7Z494	1330 aa		40.72	■■■■■ 4.11
LIG3-208	ENST00000586407	USP32	Q8NFA0	1604 aa		40.72	■■■■■ 4.11
LIG3-208	ENST00000586407	TRIM26	Q12899	539 aa	Predicted RBP	40.71	■■■■■ 4.11
LIG3-208	ENST00000586407	NEUROD1	Q13562	356 aa		40.71	■■■■■ 4.11
LIG3-208	ENST00000586407	L3MBTL2	Q969R5	705 aa		40.68	■■■■■ 4.1
LIG3-208	ENST00000586407	NBPF1	Q3BBV0	1214 aa		40.67	■■■■■ 4.1
LIG3-208	ENST00000586407	COL22A1	Q8NFW1	1626 aa	Predicted RBP	40.63	■■■■■ 4.09
LIG3-208	ENST00000586407	PHF8	Q9UPP1	1060 aa		40.61	■■■■■ 4.09
LIG3-208	ENST00000586407	ADAMTS2	O95450	1211 aa		40.59	■■■■■ 4.09
LIG3-208	ENST00000586407	ANKAR	Q7Z5J8	1434 aa		40.58	■■■■■ 4.09
LIG3-208	ENST00000586407	C8orf37	Q96NL8	207 aa		40.57	■■■■■ 4.09
LIG3-208	ENST00000586407	AFF2	P51816	1311 aa		40.56	■■■■■ 4.08
LIG3-208	ENST00000586407	PRR36	Q9H6K5	1346 aa		40.56	■■■■■ 4.08
LIG3-208	ENST00000586407	PMFBP1	Q8TBY8	1022 aa		40.55	■■■■■ 4.08
LIG3-208	ENST00000586407	TULP4	Q9NRJ4	1543 aa		40.55	■■■■■ 4.08
LIG3-208	ENST00000586407	WASL	O00401	505 aa	Predicted RBP	40.54	■■■■■ 4.08
LIG3-208	ENST00000586407	KRT28	Q7Z3Y7	464 aa		40.54	■■■■■ 4.08
LIG3-208	ENST00000586407	ZNF772	Q68DY9	489 aa	Predicted RBP	40.53	■■■■■ 4.08
LIG3-208	ENST00000586407	TRPM1	Q7Z4N2	1603 aa		40.52	■■■■■ 4.08
LIG3-208	ENST00000586407	SPATA31A3	Q5VYP0	1347 aa		40.49	■■■■■ 4.07
LIG3-208	ENST00000586407	EIF3A	Q14152	1382 aa	Known RBP	40.46	■■■■■ 4.07
LIG3-208	ENST00000586407	MARF1	Q9Y4F3	1742 aa	Known RBP	40.45	■■■■■ 4.07
LIG3-208	ENST00000586407	NGLY1	Q96IV0	654 aa		40.44	■■■■■ 4.06
LIG3-208	ENST00000586407	ATP7B	P35670	1465 aa		40.43	■■■■■ 4.06
LIG3-208	ENST00000586407	TNS3	Q68CZ2	1445 aa		40.42	■■■■■ 4.06
LIG3-208	ENST00000586407	PLEKHG5	O94827	1062 aa		40.42	■■■■■ 4.06
LIG3-208	ENST00000586407	PSME1	Q06323	249 aa		40.42	■■■■■ 4.06
LIG3-208	ENST00000586407	ITSN1	Q15811	1721 aa		40.42	■■■■■ 4.06
LIG3-208	ENST00000586407	QRICH2	Q9H0J4	1663 aa		40.41	■■■■■ 4.06
LIG3-208	ENST00000586407	TRPM3	Q9HCF6	1732 aa	Predicted RBP	40.4	■■■■■ 4.06
LIG3-208	ENST00000586407	CDK19	Q9BWU1	502 aa		40.39	■■■■■ 4.06
LIG3-208	ENST00000586407	NBPF8	Q3BBV2	869 aa		40.37	■■■■■ 4.05
LIG3-208	ENST00000586407	LMOD2	Q6P5Q4	547 aa		40.37	■■■■■ 4.05
LIG3-208	ENST00000586407	NUDT16	Q96DE0	195 aa	Known RBP	40.36	■■■■■ 4.05
LIG3-208	ENST00000586407	CENPJ	Q9HC77	1338 aa	Predicted RBP	40.36	■■■■■ 4.05
LIG3-208	ENST00000586407	SBNO1	A3KN83	1393 aa		40.35	■■■■■ 4.05
LIG3-208	ENST00000586407	TOPAZ1	Q8N9V7	1692 aa		40.35	■■■■■ 4.05
LIG3-208	ENST00000586407	ABCA3	Q99758	1704 aa		40.34	■■■■■ 4.05
LIG3-208	ENST00000586407	RXRB	P28702	533 aa		40.33	■■■■■ 4.05
LIG3-208	ENST00000586407	CABLES1	Q8TDN4	633 aa		40.33	■■■■■ 4.05
LIG3-208	ENST00000586407	ROCK2	O75116	1388 aa	Known RBP	40.33	■■■■■ 4.05
LIG3-208	ENST00000586407	QTRT2	Q9H974	415 aa	Known RBP	40.31	■■■■■ 4.04
LIG3-208	ENST00000586407	NGDN	Q8NEJ9	315 aa	Known RBP	40.3	■■■■■ 4.04
LIG3-208	ENST00000586407	ALS2	Q96Q42	1657 aa		40.3	■■■■■ 4.04
LIG3-208	ENST00000586407	GPRASP1	Q5JY77	1395 aa		40.29	■■■■■ 4.04
LIG3-208	ENST00000586407	TONSL	Q96HA7	1378 aa		40.29	■■■■■ 4.04
LIG3-208	ENST00000586407	USP21	Q9UK80	565 aa		40.29	■■■■■ 4.04
LIG3-208	ENST00000586407	ARHGEF10	O15013	1369 aa		40.25	■■■■■ 4.03
LIG3-208	ENST00000586407	FNBP4	Q8N3X1	1017 aa	Predicted RBP	40.25	■■■■■ 4.03
LIG3-208	ENST00000586407	HAP1	P54257	671 aa	Predicted RBP	40.23	■■■■■ 4.03
LIG3-208	ENST00000586407	SRPK2	P78362	688 aa	Known RBP	40.22	■■■■■ 4.03
LIG3-208	ENST00000586407	CABP2	Q9NPB3	220 aa		40.22	■■■■■ 4.03
LIG3-208	ENST00000586407	BCL9L	Q86UU0	1499 aa		40.19	■■■■■ 4.03
LIG3-208	ENST00000586407	PAK3	O75914	559 aa	Predicted RBP	40.19	■■■■■ 4.02
LIG3-208	ENST00000586407	RBM6	P78332	1123 aa	Known RBP	40.19	■■■■■ 4.02
LIG3-208	ENST00000586407	RGS12	O14924	1447 aa		40.18	■■■■■ 4.02
LIG3-208	ENST00000586407	CCDC61	Q9Y6R9	512 aa		40.18	■■■■■ 4.02
LIG3-208	ENST00000586407	CDK12	Q9NYV4	1490 aa	Predicted RBP	40.18	■■■■■ 4.02
LIG3-208	ENST00000586407	ATRN	O75882	1429 aa		40.17	■■■■■ 4.02
LIG3-208	ENST00000586407	CRYBG1	Q9Y4K1	1723 aa		40.16	■■■■■ 4.02
LIG3-208	ENST00000586407	ACE	P12821	1306 aa		40.16	■■■■■ 4.02
LIG3-208	ENST00000586407	PLCH1	Q4KWH8	1693 aa		40.15	■■■■■ 4.02
LIG3-208	ENST00000586407	TRPC5	Q9UL62	973 aa	Predicted RBP	40.15	■■■■■ 4.02

Retrieved 100 of 20,778 RNA–protein pairs in 40 ms