RNA–Protein interactions for RNA: ENST00000585466.1

CLIP3-202, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 2

Gene CLIP3, Length 368 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-202ENST00000585466 DLC1Q96QB1 1528 aa22.23■■□□□ 1.15
CLIP3-202ENST00000585466 LRP6O75581 1613 aa22.22■■□□□ 1.15
CLIP3-202ENST00000585466 DCAF11Q8TEB1 546 aa22.22■■□□□ 1.15
CLIP3-202ENST00000585466 SIRT1Q96EB6 747 aa22.22■■□□□ 1.15
CLIP3-202ENST00000585466 RGS17Q9UGC6 210 aaPredicted RBP22.22■■□□□ 1.15
CLIP3-202ENST00000585466 FMN2Q9NZ56 1722 aa22.22■■□□□ 1.15
CLIP3-202ENST00000585466 DDX17Q92841 729 aaKnown RBP22.2■■□□□ 1.14
CLIP3-202ENST00000585466 ORAI2Q96SN7 254 aa22.19■■□□□ 1.14
CLIP3-202ENST00000585466 STAC3Q96MF2 364 aa22.18■■□□□ 1.14
CLIP3-202ENST00000585466 KDM2AQ9Y2K7 1162 aa22.18■■□□□ 1.14
CLIP3-202ENST00000585466 ADGRB2O60241 1585 aa22.16■■□□□ 1.14
CLIP3-202ENST00000585466 KIAA1210Q9ULL0 1709 aa22.15■■□□□ 1.14
CLIP3-202ENST00000585466 PHF23Q9BUL5 403 aaPredicted RBP22.15■■□□□ 1.14
CLIP3-202ENST00000585466 SPATA31A6Q5VVP1 1343 aa22.14■■□□□ 1.14
CLIP3-202ENST00000585466 ARHGEF28Q8N1W1 1705 aaKnown RBP22.14■■□□□ 1.13
CLIP3-202ENST00000585466 SOS2Q07890 1332 aaPredicted RBP22.13■■□□□ 1.13
CLIP3-202ENST00000585466 RGPD8O14715 1765 aaPredicted RBP22.13■■□□□ 1.13
CLIP3-202ENST00000585466 PNPLA6Q8IY17 1366 aa22.12■■□□□ 1.13
CLIP3-202ENST00000585466 PXDNQ92626 1479 aa22.12■■□□□ 1.13
CLIP3-202ENST00000585466 PRAM1Q96QH2 718 aa22.12■■□□□ 1.13
CLIP3-202ENST00000585466 USP32Q8NFA0 1604 aa22.12■■□□□ 1.13
CLIP3-202ENST00000585466 KIF1AQ12756 1690 aa22.08■■□□□ 1.13
CLIP3-202ENST00000585466 LRRC59Q96AG4 307 aaKnown RBP22.08■■□□□ 1.13
CLIP3-202ENST00000585466 COL22A1Q8NFW1 1626 aaPredicted RBP22.07■■□□□ 1.12
CLIP3-202ENST00000585466 SIN3AQ96ST3 1273 aa22.07■■□□□ 1.12
CLIP3-202ENST00000585466 TRAK1Q9UPV9 953 aa22.07■■□□□ 1.12
CLIP3-202ENST00000585466 NUTM2FA1L443 756 aa22.06■■□□□ 1.12
CLIP3-202ENST00000585466 SAFB2Q14151 953 aaKnown RBP eCLIP22.06■■□□□ 1.12
CLIP3-202ENST00000585466 ESCO1Q5FWF5 840 aa22.06■■□□□ 1.12
CLIP3-202ENST00000585466 POTEAQ6S8J7 498 aa22.06■■□□□ 1.12
CLIP3-202ENST00000585466 TRIM26Q12899 539 aaPredicted RBP22.03■■□□□ 1.12
CLIP3-202ENST00000585466 L3MBTL2Q969R5 705 aa22.03■■□□□ 1.12
CLIP3-202ENST00000585466 NPHP3Q7Z494 1330 aa22.03■■□□□ 1.12
CLIP3-202ENST00000585466 NBPF1Q3BBV0 1214 aa22.02■■□□□ 1.12
CLIP3-202ENST00000585466 POGKQ9P215 609 aa22.02■■□□□ 1.12
CLIP3-202ENST00000585466 ANKARQ7Z5J8 1434 aa22.02■■□□□ 1.12
CLIP3-202ENST00000585466 FOXO3O43524 673 aa22.01■■□□□ 1.11
CLIP3-202ENST00000585466 TULP4Q9NRJ4 1543 aa22■■□□□ 1.11
CLIP3-202ENST00000585466 TRPM1Q7Z4N2 1603 aa21.99■■□□□ 1.11
CLIP3-202ENST00000585466 MINK1Q8N4C8 1332 aaPredicted RBP21.99■■□□□ 1.11
CLIP3-202ENST00000585466 PRR36Q9H6K5 1346 aa21.99■■□□□ 1.11
CLIP3-202ENST00000585466 NUTM2BA6NNL0 878 aaPredicted RBP21.98■■□□□ 1.11
CLIP3-202ENST00000585466 NUTM2EB1AL46 878 aaPredicted RBP21.98■■□□□ 1.11
CLIP3-202ENST00000585466 XPCQ01831 940 aaPredicted RBP21.98■■□□□ 1.11
CLIP3-202ENST00000585466 NUTM2AQ8IVF1 878 aaPredicted RBP21.98■■□□□ 1.11
CLIP3-202ENST00000585466 HIRIP3Q9BW71 556 aaPredicted RBP21.98■■□□□ 1.11
CLIP3-202ENST00000585466 PHF8Q9UPP1 1060 aa21.95■■□□□ 1.1
CLIP3-202ENST00000585466 ATP7BP35670 1465 aa21.95■■□□□ 1.1
CLIP3-202ENST00000585466 TRPM3Q9HCF6 1732 aaPredicted RBP21.94■■□□□ 1.1
CLIP3-202ENST00000585466 WASLO00401 505 aaPredicted RBP21.94■■□□□ 1.1
CLIP3-202ENST00000585466 MEX3CQ5U5Q3 659 aaKnown RBP21.94■■□□□ 1.1
CLIP3-202ENST00000585466 NEUROD1Q13562 356 aa21.93■■□□□ 1.1
CLIP3-202ENST00000585466 SPATA31A3Q5VYP0 1347 aa21.93■■□□□ 1.1
CLIP3-202ENST00000585466 TOPAZ1Q8N9V7 1692 aa21.93■■□□□ 1.1
CLIP3-202ENST00000585466 MARF1Q9Y4F3 1742 aaKnown RBP21.93■■□□□ 1.1
CLIP3-202ENST00000585466 EIF3AQ14152 1382 aaKnown RBP21.9■■□□□ 1.1
CLIP3-202ENST00000585466 AFF2P51816 1311 aa21.9■■□□□ 1.1
CLIP3-202ENST00000585466 ITSN1Q15811 1721 aa21.9■■□□□ 1.1
CLIP3-202ENST00000585466 ABCA3Q99758 1704 aa21.9■■□□□ 1.1
CLIP3-202ENST00000585466 KRT28Q7Z3Y7 464 aa21.9■■□□□ 1.1
CLIP3-202ENST00000585466 TNS3Q68CZ2 1445 aa21.89■■□□□ 1.1
CLIP3-202ENST00000585466 SBNO1A3KN83 1393 aa21.89■■□□□ 1.1
CLIP3-202ENST00000585466 QRICH2Q9H0J4 1663 aa21.89■■□□□ 1.1
CLIP3-202ENST00000585466 ZNF772Q68DY9 489 aaPredicted RBP21.89■■□□□ 1.09
CLIP3-202ENST00000585466 ALS2Q96Q42 1657 aa21.88■■□□□ 1.09
CLIP3-202ENST00000585466 NBPF8Q3BBV2 869 aa21.88■■□□□ 1.09
CLIP3-202ENST00000585466 PMFBP1Q8TBY8 1022 aa21.88■■□□□ 1.09
CLIP3-202ENST00000585466 ADAMTS2O95450 1211 aa21.87■■□□□ 1.09
CLIP3-202ENST00000585466 C8orf37Q96NL8 207 aa21.87■■□□□ 1.09
CLIP3-202ENST00000585466 GPRASP1Q5JY77 1395 aa21.86■■□□□ 1.09
CLIP3-202ENST00000585466 CDK19Q9BWU1 502 aa21.84■■□□□ 1.09
CLIP3-202ENST00000585466 CRYBG1Q9Y4K1 1723 aa21.83■■□□□ 1.09
CLIP3-202ENST00000585466 CENPJQ9HC77 1338 aaPredicted RBP21.83■■□□□ 1.09
CLIP3-202ENST00000585466 NUDT16Q96DE0 195 aaKnown RBP21.83■■□□□ 1.09
CLIP3-202ENST00000585466 FNBP4Q8N3X1 1017 aaPredicted RBP21.82■■□□□ 1.08
CLIP3-202ENST00000585466 PSME1Q06323 249 aa21.81■■□□□ 1.08
CLIP3-202ENST00000585466 ROCK2O75116 1388 aaKnown RBP21.81■■□□□ 1.08
CLIP3-202ENST00000585466 CDK12Q9NYV4 1490 aaPredicted RBP21.81■■□□□ 1.08
CLIP3-202ENST00000585466 BCL9LQ86UU0 1499 aa21.8■■□□□ 1.08
CLIP3-202ENST00000585466 RALGAPBQ86X10 1494 aa21.8■■□□□ 1.08
CLIP3-202ENST00000585466 POLR3AO14802 1390 aaPredicted RBP21.8■■□□□ 1.08
CLIP3-202ENST00000585466 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.8■■□□□ 1.08
CLIP3-202ENST00000585466 ARHGEF10O15013 1369 aa21.79■■□□□ 1.08
CLIP3-202ENST00000585466 NGLY1Q96IV0 654 aa21.79■■□□□ 1.08
CLIP3-202ENST00000585466 SLIT2O94813 1529 aa21.78■■□□□ 1.08
CLIP3-202ENST00000585466 ATRNO75882 1429 aa21.78■■□□□ 1.08
CLIP3-202ENST00000585466 CABLES1Q8TDN4 633 aa21.77■■□□□ 1.08
CLIP3-202ENST00000585466 TONSLQ96HA7 1378 aa21.76■■□□□ 1.07
CLIP3-202ENST00000585466 PLEKHG3A1L390 1219 aa21.76■■□□□ 1.07
CLIP3-202ENST00000585466 RGS12O14924 1447 aa21.76■■□□□ 1.07
CLIP3-202ENST00000585466 RXRBP28702 533 aa21.76■■□□□ 1.07
CLIP3-202ENST00000585466 QTRT2Q9H974 415 aaKnown RBP21.76■■□□□ 1.07
CLIP3-202ENST00000585466 CCDC61Q9Y6R9 512 aa21.75■■□□□ 1.07
CLIP3-202ENST00000585466 PLCH1Q4KWH8 1693 aa21.75■■□□□ 1.07
CLIP3-202ENST00000585466 NGDNQ8NEJ9 315 aaKnown RBP21.74■■□□□ 1.07
CLIP3-202ENST00000585466 USP21Q9UK80 565 aa21.74■■□□□ 1.07
CLIP3-202ENST00000585466 ACEP12821 1306 aa21.73■■□□□ 1.07
CLIP3-202ENST00000585466 RBM6P78332 1123 aaKnown RBP21.72■■□□□ 1.07
CLIP3-202ENST00000585466 CABP2Q9NPB3 220 aa21.72■■□□□ 1.07
CLIP3-202ENST00000585466 NWD2Q9ULI1 1742 aa21.72■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms