RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 MEX3CQ5U5Q3 659 aaKnown RBP18.02■□□□□ 0.47
SS18-225ENST00000585121 ESCO1Q5FWF5 840 aa17.99■□□□□ 0.47
SS18-225ENST00000585121 ORAI2Q96SN7 254 aa17.99■□□□□ 0.47
SS18-225ENST00000585121 DDX17Q92841 729 aaKnown RBP17.98■□□□□ 0.47
SS18-225ENST00000585121 POGKQ9P215 609 aa17.98■□□□□ 0.47
SS18-225ENST00000585121 LAMC1P11047 1609 aa17.97■□□□□ 0.47
SS18-225ENST00000585121 PLEKHH1Q9ULM0 1364 aa17.97■□□□□ 0.47
SS18-225ENST00000585121 RGS17Q9UGC6 210 aaPredicted RBP17.97■□□□□ 0.47
SS18-225ENST00000585121 NUTM2BA6NNL0 878 aaPredicted RBP17.96■□□□□ 0.47
SS18-225ENST00000585121 NUTM2EB1AL46 878 aaPredicted RBP17.96■□□□□ 0.47
SS18-225ENST00000585121 NUTM2AQ8IVF1 878 aaPredicted RBP17.96■□□□□ 0.47
SS18-225ENST00000585121 PRAM1Q96QH2 718 aa17.96■□□□□ 0.47
SS18-225ENST00000585121 CDC42BPGQ6DT37 1551 aa17.96■□□□□ 0.46
SS18-225ENST00000585121 NUTM2FA1L443 756 aa17.95■□□□□ 0.46
SS18-225ENST00000585121 KNDC1Q76NI1 1749 aa17.95■□□□□ 0.46
SS18-225ENST00000585121 SAFB2Q14151 953 aaKnown RBP eCLIP17.94■□□□□ 0.46
SS18-225ENST00000585121 NPHP3Q7Z494 1330 aa17.94■□□□□ 0.46
SS18-225ENST00000585121 NHSL1Q5SYE7 1610 aa17.93■□□□□ 0.46
SS18-225ENST00000585121 TRAK1Q9UPV9 953 aa17.93■□□□□ 0.46
SS18-225ENST00000585121 SHPRHQ149N8 1683 aa17.93■□□□□ 0.46
SS18-225ENST00000585121 SOS2Q07890 1332 aaPredicted RBP17.92■□□□□ 0.46
SS18-225ENST00000585121 ZNF772Q68DY9 489 aaPredicted RBP17.91■□□□□ 0.46
SS18-225ENST00000585121 POTEAQ6S8J7 498 aa17.91■□□□□ 0.46
SS18-225ENST00000585121 PNPLA6Q8IY17 1366 aa17.9■□□□□ 0.46
SS18-225ENST00000585121 FOXO3O43524 673 aa17.9■□□□□ 0.46
SS18-225ENST00000585121 DLC1Q96QB1 1528 aa17.89■□□□□ 0.46
SS18-225ENST00000585121 LRP6O75581 1613 aa17.89■□□□□ 0.45
SS18-225ENST00000585121 ADGRB1O14514 1584 aa17.87■□□□□ 0.45
SS18-225ENST00000585121 PHF8Q9UPP1 1060 aa17.86■□□□□ 0.45
SS18-225ENST00000585121 MINK1Q8N4C8 1332 aaPredicted RBP17.85■□□□□ 0.45
SS18-225ENST00000585121 XPCQ01831 940 aaPredicted RBP17.85■□□□□ 0.45
SS18-225ENST00000585121 PSME1Q06323 249 aa17.84■□□□□ 0.45
SS18-225ENST00000585121 TRIM26Q12899 539 aaPredicted RBP17.84■□□□□ 0.45
SS18-225ENST00000585121 C8orf37Q96NL8 207 aa17.84■□□□□ 0.45
SS18-225ENST00000585121 HIRIP3Q9BW71 556 aaPredicted RBP17.84■□□□□ 0.45
SS18-225ENST00000585121 EIF3AQ14152 1382 aaKnown RBP17.84■□□□□ 0.45
SS18-225ENST00000585121 ADAMTS2O95450 1211 aa17.83■□□□□ 0.45
SS18-225ENST00000585121 NEUROD1Q13562 356 aa17.83■□□□□ 0.45
SS18-225ENST00000585121 KRT28Q7Z3Y7 464 aa17.83■□□□□ 0.45
SS18-225ENST00000585121 FMN2Q9NZ56 1722 aa17.83■□□□□ 0.44
SS18-225ENST00000585121 AFF2P51816 1311 aa17.83■□□□□ 0.44
SS18-225ENST00000585121 SIN3AQ96ST3 1273 aa17.82■□□□□ 0.44
SS18-225ENST00000585121 L3MBTL2Q969R5 705 aa17.82■□□□□ 0.44
SS18-225ENST00000585121 NGLY1Q96IV0 654 aa17.82■□□□□ 0.44
SS18-225ENST00000585121 ANKARQ7Z5J8 1434 aa17.81■□□□□ 0.44
SS18-225ENST00000585121 WASLO00401 505 aaPredicted RBP17.81■□□□□ 0.44
SS18-225ENST00000585121 PXDNQ92626 1479 aa17.81■□□□□ 0.44
SS18-225ENST00000585121 KIF1AQ12756 1690 aa17.79■□□□□ 0.44
SS18-225ENST00000585121 RXRBP28702 533 aa17.79■□□□□ 0.44
SS18-225ENST00000585121 NBPF1Q3BBV0 1214 aa17.78■□□□□ 0.44
SS18-225ENST00000585121 PMFBP1Q8TBY8 1022 aa17.78■□□□□ 0.44
SS18-225ENST00000585121 SPATA31A3Q5VYP0 1347 aa17.78■□□□□ 0.44
SS18-225ENST00000585121 ADGRB2O60241 1585 aa17.77■□□□□ 0.44
SS18-225ENST00000585121 QTRT2Q9H974 415 aaKnown RBP17.77■□□□□ 0.43
SS18-225ENST00000585121 HAP1P54257 671 aaPredicted RBP17.76■□□□□ 0.43
SS18-225ENST00000585121 LMOD2Q6P5Q4 547 aa17.76■□□□□ 0.43
SS18-225ENST00000585121 KIAA1210Q9ULL0 1709 aa17.75■□□□□ 0.43
SS18-225ENST00000585121 GPRASP1Q5JY77 1395 aa17.75■□□□□ 0.43
SS18-225ENST00000585121 NGDNQ8NEJ9 315 aaKnown RBP17.75■□□□□ 0.43
SS18-225ENST00000585121 SBNO1A3KN83 1393 aa17.75■□□□□ 0.43
SS18-225ENST00000585121 USP21Q9UK80 565 aa17.74■□□□□ 0.43
SS18-225ENST00000585121 TULP4Q9NRJ4 1543 aa17.73■□□□□ 0.43
SS18-225ENST00000585121 NUDT16Q96DE0 195 aaKnown RBP17.73■□□□□ 0.43
SS18-225ENST00000585121 CDK19Q9BWU1 502 aa17.73■□□□□ 0.43
SS18-225ENST00000585121 PRR36Q9H6K5 1346 aa17.73■□□□□ 0.43
SS18-225ENST00000585121 COL22A1Q8NFW1 1626 aaPredicted RBP17.73■□□□□ 0.43
SS18-225ENST00000585121 TNS3Q68CZ2 1445 aa17.73■□□□□ 0.43
SS18-225ENST00000585121 RBM6P78332 1123 aaKnown RBP17.72■□□□□ 0.43
SS18-225ENST00000585121 FNBP4Q8N3X1 1017 aaPredicted RBP17.72■□□□□ 0.43
SS18-225ENST00000585121 CENPJQ9HC77 1338 aaPredicted RBP17.72■□□□□ 0.43
SS18-225ENST00000585121 ARHGEF10O15013 1369 aa17.72■□□□□ 0.43
SS18-225ENST00000585121 ARHGEF28Q8N1W1 1705 aaKnown RBP17.71■□□□□ 0.43
SS18-225ENST00000585121 TRPC5Q9UL62 973 aaPredicted RBP17.71■□□□□ 0.43
SS18-225ENST00000585121 RGPD8O14715 1765 aaPredicted RBP17.7■□□□□ 0.42
SS18-225ENST00000585121 ROCK2O75116 1388 aaKnown RBP17.69■□□□□ 0.42
SS18-225ENST00000585121 PLEKHG5O94827 1062 aa17.69■□□□□ 0.42
SS18-225ENST00000585121 USP32Q8NFA0 1604 aa17.69■□□□□ 0.42
SS18-225ENST00000585121 PAK3O75914 559 aaPredicted RBP17.68■□□□□ 0.42
SS18-225ENST00000585121 SRPK2P78362 688 aaKnown RBP17.68■□□□□ 0.42
SS18-225ENST00000585121 CCDC61Q9Y6R9 512 aa17.68■□□□□ 0.42
SS18-225ENST00000585121 TONSLQ96HA7 1378 aa17.68■□□□□ 0.42
SS18-225ENST00000585121 CDK12Q9NYV4 1490 aaPredicted RBP17.67■□□□□ 0.42
SS18-225ENST00000585121 CABLES1Q8TDN4 633 aa17.67■□□□□ 0.42
SS18-225ENST00000585121 ATP7BP35670 1465 aa17.65■□□□□ 0.42
SS18-225ENST00000585121 PLEKHG3A1L390 1219 aa17.63■□□□□ 0.41
SS18-225ENST00000585121 UNC5CLQ8IV45 518 aa17.63■□□□□ 0.41
SS18-225ENST00000585121 CABP2Q9NPB3 220 aa17.63■□□□□ 0.41
SS18-225ENST00000585121 ACEP12821 1306 aa17.63■□□□□ 0.41
SS18-225ENST00000585121 NBPF8Q3BBV2 869 aa17.62■□□□□ 0.41
SS18-225ENST00000585121 EVC2Q86UK5 1308 aa17.62■□□□□ 0.41
SS18-225ENST00000585121 ATRNO75882 1429 aa17.62■□□□□ 0.41
SS18-225ENST00000585121 BCL9LQ86UU0 1499 aa17.61■□□□□ 0.41
SS18-225ENST00000585121 CARD11Q9BXL7 1154 aa17.61■□□□□ 0.41
SS18-225ENST00000585121 TRPM1Q7Z4N2 1603 aa17.61■□□□□ 0.41
SS18-225ENST00000585121 ITSN1Q15811 1721 aa17.61■□□□□ 0.41
SS18-225ENST00000585121 GJD4Q96KN9 370 aaPredicted RBP17.6■□□□□ 0.41
SS18-225ENST00000585121 POLR3AO14802 1390 aaPredicted RBP17.6■□□□□ 0.41
SS18-225ENST00000585121 RGS12O14924 1447 aa17.59■□□□□ 0.41
SS18-225ENST00000585121 SLIT2O94813 1529 aa17.59■□□□□ 0.41
SS18-225ENST00000585121 MARF1Q9Y4F3 1742 aaKnown RBP17.58■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms