RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 EVC2Q86UK5 1308 aa14.95□□□□□ -0.02
SS18-213ENST00000579640 SAFB2Q14151 953 aaKnown RBP eCLIP14.95□□□□□ -0.02
SS18-213ENST00000579640 DISP3Q9P2K9 1392 aa14.95□□□□□ -0.02
SS18-213ENST00000579640 WASHC2AQ641Q2 1341 aa14.94□□□□□ -0.02
SS18-213ENST00000579640 C11orf95C9JLR9 678 aaPredicted RBP14.94□□□□□ -0.02
SS18-213ENST00000579640 PUS7Q96PZ0 661 aaKnown RBP14.94□□□□□ -0.02
SS18-213ENST00000579640 ADGRB2O60241 1585 aa14.94□□□□□ -0.02
SS18-213ENST00000579640 MINK1Q8N4C8 1332 aaPredicted RBP14.93□□□□□ -0.02
SS18-213ENST00000579640 TULP4Q9NRJ4 1543 aa14.92□□□□□ -0.02
SS18-213ENST00000579640 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.92□□□□□ -0.02
SS18-213ENST00000579640 STRCP1A6NGW2 1772 aa14.91□□□□□ -0.02
SS18-213ENST00000579640 NCOA3Q9Y6Q9 1424 aa14.91□□□□□ -0.02
SS18-213ENST00000579640 PROSER2Q86WR7 435 aaPredicted RBP14.89□□□□□ -0.03
SS18-213ENST00000579640 WASLO00401 505 aaPredicted RBP14.89□□□□□ -0.03
SS18-213ENST00000579640 ADGRL3Q9HAR2 1447 aa14.88□□□□□ -0.03
SS18-213ENST00000579640 POLR3GLQ9BT43 218 aa14.88□□□□□ -0.03
SS18-213ENST00000579640 CDK19Q9BWU1 502 aa14.88□□□□□ -0.03
SS18-213ENST00000579640 ATAD2Q6PL18 1390 aa14.88□□□□□ -0.03
SS18-213ENST00000579640 SRPK2P78362 688 aaKnown RBP14.87□□□□□ -0.03
SS18-213ENST00000579640 ZNF335Q9H4Z2 1342 aaPredicted RBP14.87□□□□□ -0.03
SS18-213ENST00000579640 CDC42BPGQ6DT37 1551 aa14.87□□□□□ -0.03
SS18-213ENST00000579640 NALCNQ8IZF0 1738 aa14.87□□□□□ -0.03
SS18-213ENST00000579640 NINLQ9Y2I6 1382 aa14.86□□□□□ -0.03
SS18-213ENST00000579640 TMEM94Q12767 1356 aa14.85□□□□□ -0.03
SS18-213ENST00000579640 DDX10Q13206 875 aaKnown RBP14.85□□□□□ -0.03
SS18-213ENST00000579640 CABP2Q9NPB3 220 aa14.85□□□□□ -0.03
SS18-213ENST00000579640 C14orf37Q86TY3 774 aa14.85□□□□□ -0.03
SS18-213ENST00000579640 LRRC7Q96NW7 1537 aa14.84□□□□□ -0.03
SS18-213ENST00000579640 MYOM1P52179 1685 aa14.84□□□□□ -0.03
SS18-213ENST00000579640 C19orf44Q9H6X5 657 aa14.83□□□□□ -0.04
SS18-213ENST00000579640 FMN2Q9NZ56 1722 aa14.83□□□□□ -0.04
SS18-213ENST00000579640 DCCP43146 1447 aa14.83□□□□□ -0.04
SS18-213ENST00000579640 ANKARQ7Z5J8 1434 aa14.83□□□□□ -0.04
SS18-213ENST00000579640 ATP7BP35670 1465 aa14.81□□□□□ -0.04
SS18-213ENST00000579640 NUDT16Q96DE0 195 aaKnown RBP14.81□□□□□ -0.04
SS18-213ENST00000579640 RBM33Q96EV2 1170 aaKnown RBP14.81□□□□□ -0.04
SS18-213ENST00000579640 XIRP1Q702N8 1843 aaKnown RBP14.81□□□□□ -0.04
SS18-213ENST00000579640 DIEXFQ68CQ4 756 aaKnown RBP14.8□□□□□ -0.04
SS18-213ENST00000579640 CCDC61Q9Y6R9 512 aa14.8□□□□□ -0.04
SS18-213ENST00000579640 MSH6P52701 1360 aa14.8□□□□□ -0.04
SS18-213ENST00000579640 LTBP4Q8N2S1 1624 aa14.8□□□□□ -0.04
SS18-213ENST00000579640 ITSN1Q15811 1721 aa14.8□□□□□ -0.04
SS18-213ENST00000579640 TMC1Q8TDI8 760 aa14.8□□□□□ -0.04
SS18-213ENST00000579640 TOPAZ1Q8N9V7 1692 aa14.79□□□□□ -0.04
SS18-213ENST00000579640 USP32Q8NFA0 1604 aa14.78□□□□□ -0.04
SS18-213ENST00000579640 PRR36Q9H6K5 1346 aa14.78□□□□□ -0.04
SS18-213ENST00000579640 PPIP5K1Q6PFW1 1433 aa14.78□□□□□ -0.04
SS18-213ENST00000579640 ATF3P18847 181 aa14.78□□□□□ -0.04
SS18-213ENST00000579640 CADPS2Q86UW7 1296 aa14.78□□□□□ -0.04
SS18-213ENST00000579640 SLC12A5Q9H2X9 1139 aa14.78□□□□□ -0.04
SS18-213ENST00000579640 PANK3Q9H999 370 aa14.78□□□□□ -0.04
SS18-213ENST00000579640 ANKRD36BQ8N2N9 1353 aa14.77□□□□□ -0.04
SS18-213ENST00000579640 TERF2IPQ9NYB0 399 aa14.77□□□□□ -0.05
SS18-213ENST00000579640 CABP1Q9NZU7 370 aa14.76□□□□□ -0.05
SS18-213ENST00000579640 PLEKHG3A1L390 1219 aa14.76□□□□□ -0.05
SS18-213ENST00000579640 HDGFL2Q7Z4V5 671 aaPredicted RBP14.75□□□□□ -0.05
SS18-213ENST00000579640 RGPD8O14715 1765 aaPredicted RBP14.74□□□□□ -0.05
SS18-213ENST00000579640 NUTM2FA1L443 756 aa14.74□□□□□ -0.05
SS18-213ENST00000579640 CD163L1Q9NR16 1453 aa14.74□□□□□ -0.05
SS18-213ENST00000579640 MST1RQ04912 1400 aa14.73□□□□□ -0.05
SS18-213ENST00000579640 C1orf167Q5SNV9 1468 aa14.73□□□□□ -0.05
SS18-213ENST00000579640 PER1O15534 1290 aaPredicted RBP14.73□□□□□ -0.05
SS18-213ENST00000579640 CPSF1Q10570 1443 aaKnown RBP14.73□□□□□ -0.05
SS18-213ENST00000579640 ZNF692Q9BU19 519 aaPredicted RBP14.73□□□□□ -0.05
SS18-213ENST00000579640 KNSTRNQ9Y448 316 aa14.73□□□□□ -0.05
SS18-213ENST00000579640 A0A1W2PP64 1363 aa14.73□□□□□ -0.05
SS18-213ENST00000579640 AKAP12Q02952 1782 aa14.72□□□□□ -0.05
SS18-213ENST00000579640 POLR3AO14802 1390 aaPredicted RBP14.71□□□□□ -0.05
SS18-213ENST00000579640 KIF1AQ12756 1690 aa14.71□□□□□ -0.05
SS18-213ENST00000579640 PHF8Q9UPP1 1060 aa14.71□□□□□ -0.06
SS18-213ENST00000579640 IQSEC2Q5JU85 1478 aa14.71□□□□□ -0.06
SS18-213ENST00000579640 NSD3Q9BZ95 1437 aa14.7□□□□□ -0.06
SS18-213ENST00000579640 MON2Q7Z3U7 1717 aa14.7□□□□□ -0.06
SS18-213ENST00000579640 ESCO1Q5FWF5 840 aa14.7□□□□□ -0.06
SS18-213ENST00000579640 CARD14Q9BXL6 1004 aa14.7□□□□□ -0.06
SS18-213ENST00000579640 KTN1Q86UP2 1357 aaKnown RBP14.7□□□□□ -0.06
SS18-213ENST00000579640 NPC1L1Q9UHC9 1359 aa14.7□□□□□ -0.06
SS18-213ENST00000579640 ACEP12821 1306 aa14.7□□□□□ -0.06
SS18-213ENST00000579640 BRD4O60885 1362 aaPredicted RBP14.69□□□□□ -0.06
SS18-213ENST00000579640 ANP32CO43423 234 aa14.69□□□□□ -0.06
SS18-213ENST00000579640 NGDNQ8NEJ9 315 aaKnown RBP14.69□□□□□ -0.06
SS18-213ENST00000579640 EDC4Q6P2E9 1401 aaKnown RBP14.68□□□□□ -0.06
SS18-213ENST00000579640 PMFBP1Q8TBY8 1022 aa14.68□□□□□ -0.06
SS18-213ENST00000579640 CGNL1Q0VF96 1302 aa14.68□□□□□ -0.06
SS18-213ENST00000579640 USP6P35125 1406 aa14.67□□□□□ -0.06
SS18-213ENST00000579640 NSD2O96028 1365 aa14.67□□□□□ -0.06
SS18-213ENST00000579640 AMER1Q5JTC6 1135 aaPredicted RBP14.66□□□□□ -0.06
SS18-213ENST00000579640 ORAI2Q96SN7 254 aa14.66□□□□□ -0.06
SS18-213ENST00000579640 SLAIN2Q9P270 581 aa14.66□□□□□ -0.06
SS18-213ENST00000579640 NRKQ7Z2Y5 1582 aa14.65□□□□□ -0.06
SS18-213ENST00000579640 SSH2Q76I76 1423 aa14.64□□□□□ -0.07
SS18-213ENST00000579640 RALBP1Q15311 655 aa14.64□□□□□ -0.07
SS18-213ENST00000579640 PRKRIP1Q9H875 184 aaPredicted RBP14.64□□□□□ -0.07
SS18-213ENST00000579640 TTC21AQ8NDW8 1320 aa14.64□□□□□ -0.07
SS18-213ENST00000579640 KIF20BQ96Q89 1820 aa14.63□□□□□ -0.07
SS18-213ENST00000579640 TTC21BQ7Z4L5 1316 aa14.63□□□□□ -0.07
SS18-213ENST00000579640 PSME1Q06323 249 aa14.62□□□□□ -0.07
SS18-213ENST00000579640 BRINP3Q76B58 766 aa14.62□□□□□ -0.07
SS18-213ENST00000579640 NPHP3Q7Z494 1330 aa14.62□□□□□ -0.07
SS18-213ENST00000579640 PARD3Q8TEW0 1356 aa14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms