RNA–Protein interactions for RNA: ENST00000578314.1

VAPA-205, Transcript of VAMP associated protein A, human

TSL 3

Gene VAPA, Length 532 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VAPA-205	ENST00000578314	DCAF11	Q8TEB1	546 aa		33.58	■■■□□ 2.97
VAPA-205	ENST00000578314	DHX57	Q6P158	1386 aa	Known RBP	33.57	■■■□□ 2.96
VAPA-205	ENST00000578314	LRP6	O75581	1613 aa		33.57	■■■□□ 2.96
VAPA-205	ENST00000578314	KDM2A	Q9Y2K7	1162 aa		33.55	■■■□□ 2.96
VAPA-205	ENST00000578314	PLEKHH1	Q9ULM0	1364 aa		33.54	■■■□□ 2.96
VAPA-205	ENST00000578314	ORAI2	Q96SN7	254 aa		33.53	■■■□□ 2.96
VAPA-205	ENST00000578314	LAMC1	P11047	1609 aa		33.51	■■■□□ 2.96
VAPA-205	ENST00000578314	LRRC59	Q96AG4	307 aa	Known RBP	33.51	■■■□□ 2.95
VAPA-205	ENST00000578314	KNDC1	Q76NI1	1749 aa		33.5	■■■□□ 2.95
VAPA-205	ENST00000578314	DDX17	Q92841	729 aa	Known RBP	33.5	■■■□□ 2.95
VAPA-205	ENST00000578314	CDC42BPG	Q6DT37	1551 aa		33.5	■■■□□ 2.95
VAPA-205	ENST00000578314	MEX3C	Q5U5Q3	659 aa	Known RBP	33.47	■■■□□ 2.95
VAPA-205	ENST00000578314	ADGRB1	O14514	1584 aa		33.43	■■■□□ 2.94
VAPA-205	ENST00000578314	ESCO1	Q5FWF5	840 aa		33.42	■■■□□ 2.94
VAPA-205	ENST00000578314	PRAM1	Q96QH2	718 aa		33.42	■■■□□ 2.94
VAPA-205	ENST00000578314	SOS2	Q07890	1332 aa	Predicted RBP	33.42	■■■□□ 2.94
VAPA-205	ENST00000578314	DLC1	Q96QB1	1528 aa		33.39	■■■□□ 2.94
VAPA-205	ENST00000578314	NUTM2B	A6NNL0	878 aa	Predicted RBP	33.39	■■■□□ 2.94
VAPA-205	ENST00000578314	NUTM2E	B1AL46	878 aa	Predicted RBP	33.39	■■■□□ 2.94
VAPA-205	ENST00000578314	NUTM2A	Q8IVF1	878 aa	Predicted RBP	33.39	■■■□□ 2.94
VAPA-205	ENST00000578314	ZNF772	Q68DY9	489 aa	Predicted RBP	33.37	■■■□□ 2.93
VAPA-205	ENST00000578314	POGK	Q9P215	609 aa		33.37	■■■□□ 2.93
VAPA-205	ENST00000578314	PNPLA6	Q8IY17	1366 aa		33.36	■■■□□ 2.93
VAPA-205	ENST00000578314	NUTM2F	A1L443	756 aa		33.36	■■■□□ 2.93
VAPA-205	ENST00000578314	TRAK1	Q9UPV9	953 aa		33.36	■■■□□ 2.93
VAPA-205	ENST00000578314	NPHP3	Q7Z494	1330 aa		33.34	■■■□□ 2.93
VAPA-205	ENST00000578314	SAFB2	Q14151	953 aa	Known RBP eCLIP	33.34	■■■□□ 2.93
VAPA-205	ENST00000578314	FOXO3	O43524	673 aa		33.31	■■■□□ 2.92
VAPA-205	ENST00000578314	FMN2	Q9NZ56	1722 aa		33.28	■■■□□ 2.92
VAPA-205	ENST00000578314	PXDN	Q92626	1479 aa		33.25	■■■□□ 2.91
VAPA-205	ENST00000578314	AFF2	P51816	1311 aa		33.25	■■■□□ 2.91
VAPA-205	ENST00000578314	SIN3A	Q96ST3	1273 aa		33.23	■■■□□ 2.91
VAPA-205	ENST00000578314	XPC	Q01831	940 aa	Predicted RBP	33.21	■■■□□ 2.91
VAPA-205	ENST00000578314	TRIM26	Q12899	539 aa	Predicted RBP	33.21	■■■□□ 2.91
VAPA-205	ENST00000578314	L3MBTL2	Q969R5	705 aa		33.21	■■■□□ 2.91
VAPA-205	ENST00000578314	PHF8	Q9UPP1	1060 aa		33.21	■■■□□ 2.91
VAPA-205	ENST00000578314	C8orf37	Q96NL8	207 aa		33.2	■■■□□ 2.91
VAPA-205	ENST00000578314	HIRIP3	Q9BW71	556 aa	Predicted RBP	33.2	■■■□□ 2.91
VAPA-205	ENST00000578314	MINK1	Q8N4C8	1332 aa	Predicted RBP	33.2	■■■□□ 2.91
VAPA-205	ENST00000578314	ADGRB2	O60241	1585 aa		33.19	■■■□□ 2.9
VAPA-205	ENST00000578314	ANKAR	Q7Z5J8	1434 aa		33.19	■■■□□ 2.9
VAPA-205	ENST00000578314	RXRB	P28702	533 aa		33.18	■■■□□ 2.9
VAPA-205	ENST00000578314	NBPF1	Q3BBV0	1214 aa		33.18	■■■□□ 2.9
VAPA-205	ENST00000578314	COL22A1	Q8NFW1	1626 aa	Predicted RBP	33.17	■■■□□ 2.9
VAPA-205	ENST00000578314	WASL	O00401	505 aa	Predicted RBP	33.16	■■■□□ 2.9
VAPA-205	ENST00000578314	KRT28	Q7Z3Y7	464 aa		33.16	■■■□□ 2.9
VAPA-205	ENST00000578314	ADAMTS2	O95450	1211 aa		33.15	■■■□□ 2.9
VAPA-205	ENST00000578314	KIF1A	Q12756	1690 aa		33.15	■■■□□ 2.9
VAPA-205	ENST00000578314	KIAA1210	Q9ULL0	1709 aa		33.14	■■■□□ 2.9
VAPA-205	ENST00000578314	NEUROD1	Q13562	356 aa		33.14	■■■□□ 2.9
VAPA-205	ENST00000578314	EIF3A	Q14152	1382 aa	Known RBP	33.13	■■■□□ 2.89
VAPA-205	ENST00000578314	SPATA31A3	Q5VYP0	1347 aa		33.13	■■■□□ 2.89
VAPA-205	ENST00000578314	CDK12	Q9NYV4	1490 aa	Predicted RBP	33.12	■■■□□ 2.89
VAPA-205	ENST00000578314	PSME1	Q06323	249 aa		33.11	■■■□□ 2.89
VAPA-205	ENST00000578314	NGLY1	Q96IV0	654 aa		33.1	■■■□□ 2.89
VAPA-205	ENST00000578314	PRR36	Q9H6K5	1346 aa		33.09	■■■□□ 2.89
VAPA-205	ENST00000578314	PMFBP1	Q8TBY8	1022 aa		33.08	■■■□□ 2.89
VAPA-205	ENST00000578314	ARHGEF28	Q8N1W1	1705 aa	Known RBP	33.08	■■■□□ 2.89
VAPA-205	ENST00000578314	USP32	Q8NFA0	1604 aa		33.07	■■■□□ 2.88
VAPA-205	ENST00000578314	QTRT2	Q9H974	415 aa	Known RBP	33.07	■■■□□ 2.88
VAPA-205	ENST00000578314	TULP4	Q9NRJ4	1543 aa		33.07	■■■□□ 2.88
VAPA-205	ENST00000578314	RGPD8	O14715	1765 aa	Predicted RBP	33.06	■■■□□ 2.88
VAPA-205	ENST00000578314	SBNO1	A3KN83	1393 aa		33.05	■■■□□ 2.88
VAPA-205	ENST00000578314	RBM6	P78332	1123 aa	Known RBP	33.03	■■■□□ 2.88
VAPA-205	ENST00000578314	FNBP4	Q8N3X1	1017 aa	Predicted RBP	33.03	■■■□□ 2.88
VAPA-205	ENST00000578314	CDK19	Q9BWU1	502 aa		33.01	■■■□□ 2.87
VAPA-205	ENST00000578314	TNS3	Q68CZ2	1445 aa		33.01	■■■□□ 2.87
VAPA-205	ENST00000578314	NUDT16	Q96DE0	195 aa	Known RBP	33	■■■□□ 2.87
VAPA-205	ENST00000578314	USP21	Q9UK80	565 aa		32.99	■■■□□ 2.87
VAPA-205	ENST00000578314	RGS12	O14924	1447 aa		32.99	■■■□□ 2.87
VAPA-205	ENST00000578314	MARF1	Q9Y4F3	1742 aa	Known RBP	32.99	■■■□□ 2.87
VAPA-205	ENST00000578314	UPF1	Q92900	1129 aa	Known RBP eCLIP	32.98	■■■□□ 2.87
VAPA-205	ENST00000578314	CENPJ	Q9HC77	1338 aa	Predicted RBP	32.97	■■■□□ 2.87
VAPA-205	ENST00000578314	ARHGEF10	O15013	1369 aa		32.96	■■■□□ 2.87
VAPA-205	ENST00000578314	GPRASP1	Q5JY77	1395 aa		32.96	■■■□□ 2.87
VAPA-205	ENST00000578314	ATP7B	P35670	1465 aa		32.95	■■■□□ 2.87
VAPA-205	ENST00000578314	NGDN	Q8NEJ9	315 aa	Known RBP	32.94	■■■□□ 2.86
VAPA-205	ENST00000578314	TRPC5	Q9UL62	973 aa	Predicted RBP	32.93	■■■□□ 2.86
VAPA-205	ENST00000578314	LMOD2	Q6P5Q4	547 aa		32.91	■■■□□ 2.86
VAPA-205	ENST00000578314	CCDC61	Q9Y6R9	512 aa		32.91	■■■□□ 2.86
VAPA-205	ENST00000578314	ATRN	O75882	1429 aa		32.91	■■■□□ 2.86
VAPA-205	ENST00000578314	NBPF8	Q3BBV2	869 aa		32.9	■■■□□ 2.86
VAPA-205	ENST00000578314	CABLES1	Q8TDN4	633 aa		32.89	■■■□□ 2.86
VAPA-205	ENST00000578314	BCL9L	Q86UU0	1499 aa		32.88	■■■□□ 2.85
VAPA-205	ENST00000578314	ROCK2	O75116	1388 aa	Known RBP	32.88	■■■□□ 2.85
VAPA-205	ENST00000578314	PLEKHG3	A1L390	1219 aa		32.88	■■■□□ 2.85
VAPA-205	ENST00000578314	TRPM1	Q7Z4N2	1603 aa		32.88	■■■□□ 2.85
VAPA-205	ENST00000578314	HAP1	P54257	671 aa	Predicted RBP	32.85	■■■□□ 2.85
VAPA-205	ENST00000578314	POLR3A	O14802	1390 aa	Predicted RBP	32.83	■■■□□ 2.85
VAPA-205	ENST00000578314	TONSL	Q96HA7	1378 aa		32.83	■■■□□ 2.85
VAPA-205	ENST00000578314	TRPM3	Q9HCF6	1732 aa	Predicted RBP	32.83	■■■□□ 2.85
VAPA-205	ENST00000578314	SRPK2	P78362	688 aa	Known RBP	32.83	■■■□□ 2.85
VAPA-205	ENST00000578314	ACE	P12821	1306 aa		32.82	■■■□□ 2.84
VAPA-205	ENST00000578314	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	32.81	■■■□□ 2.84
VAPA-205	ENST00000578314	SLIT2	O94813	1529 aa		32.81	■■■□□ 2.84
VAPA-205	ENST00000578314	PAK3	O75914	559 aa	Predicted RBP	32.8	■■■□□ 2.84
VAPA-205	ENST00000578314	PLEKHG5	O94827	1062 aa		32.8	■■■□□ 2.84
VAPA-205	ENST00000578314	UNC5CL	Q8IV45	518 aa		32.8	■■■□□ 2.84
VAPA-205	ENST00000578314	CABP2	Q9NPB3	220 aa		32.8	■■■□□ 2.84
VAPA-205	ENST00000578314	ITSN1	Q15811	1721 aa		32.8	■■■□□ 2.84

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