RNA–Protein interactions for RNA: ENST00000578208.1

GGA3-204, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 3

Gene GGA3, Length 478 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-204ENST00000578208 COL16A1Q07092 1604 aaPredicted RBP16.78■□□□□ 0.28
GGA3-204ENST00000578208 PLEKHH1Q9ULM0 1364 aa16.77■□□□□ 0.28
GGA3-204ENST00000578208 NEUROD1Q13562 356 aa16.77■□□□□ 0.28
GGA3-204ENST00000578208 JCADQ9P266 1359 aa16.77■□□□□ 0.27
GGA3-204ENST00000578208 PRAM1Q96QH2 718 aa16.76■□□□□ 0.27
GGA3-204ENST00000578208 PHF23Q9BUL5 403 aaPredicted RBP16.76■□□□□ 0.27
GGA3-204ENST00000578208 NHSL1Q5SYE7 1610 aa16.75■□□□□ 0.27
GGA3-204ENST00000578208 SIN3AQ96ST3 1273 aa16.75■□□□□ 0.27
GGA3-204ENST00000578208 TRAK1Q9UPV9 953 aa16.75■□□□□ 0.27
GGA3-204ENST00000578208 KIAA1210Q9ULL0 1709 aa16.74■□□□□ 0.27
GGA3-204ENST00000578208 SAFB2Q14151 953 aaKnown RBP eCLIP16.74■□□□□ 0.27
GGA3-204ENST00000578208 ESCO1Q5FWF5 840 aa16.72■□□□□ 0.27
GGA3-204ENST00000578208 L3MBTL2Q969R5 705 aa16.72■□□□□ 0.27
GGA3-204ENST00000578208 FMN2Q9NZ56 1722 aa16.72■□□□□ 0.27
GGA3-204ENST00000578208 ORAI2Q96SN7 254 aa16.71■□□□□ 0.27
GGA3-204ENST00000578208 SHPRHQ149N8 1683 aa16.7■□□□□ 0.26
GGA3-204ENST00000578208 NUTM2FA1L443 756 aa16.7■□□□□ 0.26
GGA3-204ENST00000578208 SPATA31A6Q5VVP1 1343 aa16.7■□□□□ 0.26
GGA3-204ENST00000578208 ADGRB2O60241 1585 aa16.69■□□□□ 0.26
GGA3-204ENST00000578208 LRRC59Q96AG4 307 aaKnown RBP16.69■□□□□ 0.26
GGA3-204ENST00000578208 NPHP3Q7Z494 1330 aa16.69■□□□□ 0.26
GGA3-204ENST00000578208 ARHGEF28Q8N1W1 1705 aaKnown RBP16.68■□□□□ 0.26
GGA3-204ENST00000578208 EIF3AQ14152 1382 aaKnown RBP16.68■□□□□ 0.26
GGA3-204ENST00000578208 TONSLQ96HA7 1378 aa16.68■□□□□ 0.26
GGA3-204ENST00000578208 DDX17Q92841 729 aaKnown RBP16.68■□□□□ 0.26
GGA3-204ENST00000578208 KIF1AQ12756 1690 aa16.67■□□□□ 0.26
GGA3-204ENST00000578208 MINK1Q8N4C8 1332 aaPredicted RBP16.67■□□□□ 0.26
GGA3-204ENST00000578208 ANKARQ7Z5J8 1434 aa16.65■□□□□ 0.26
GGA3-204ENST00000578208 MEX3CQ5U5Q3 659 aaKnown RBP16.65■□□□□ 0.26
GGA3-204ENST00000578208 HIRIP3Q9BW71 556 aaPredicted RBP16.65■□□□□ 0.26
GGA3-204ENST00000578208 NBPF1Q3BBV0 1214 aa16.64■□□□□ 0.25
GGA3-204ENST00000578208 PCGF6Q9BYE7 350 aa16.64■□□□□ 0.25
GGA3-204ENST00000578208 SOS2Q07890 1332 aaPredicted RBP16.64■□□□□ 0.25
GGA3-204ENST00000578208 TRPM1Q7Z4N2 1603 aa16.63■□□□□ 0.25
GGA3-204ENST00000578208 ROCK2O75116 1388 aaKnown RBP16.63■□□□□ 0.25
GGA3-204ENST00000578208 TULP4Q9NRJ4 1543 aa16.62■□□□□ 0.25
GGA3-204ENST00000578208 NUTM2BA6NNL0 878 aaPredicted RBP16.62■□□□□ 0.25
GGA3-204ENST00000578208 NUTM2EB1AL46 878 aaPredicted RBP16.62■□□□□ 0.25
GGA3-204ENST00000578208 WASLO00401 505 aaPredicted RBP16.62■□□□□ 0.25
GGA3-204ENST00000578208 FOXO3O43524 673 aa16.62■□□□□ 0.25
GGA3-204ENST00000578208 NUTM2AQ8IVF1 878 aaPredicted RBP16.62■□□□□ 0.25
GGA3-204ENST00000578208 PHF8Q9UPP1 1060 aa16.62■□□□□ 0.25
GGA3-204ENST00000578208 PNPLA6Q8IY17 1366 aa16.62■□□□□ 0.25
GGA3-204ENST00000578208 LRP6O75581 1613 aa16.61■□□□□ 0.25
GGA3-204ENST00000578208 PXDNQ92626 1479 aa16.61■□□□□ 0.25
GGA3-204ENST00000578208 ILDR2Q71H61 639 aa16.6■□□□□ 0.25
GGA3-204ENST00000578208 CENPJQ9HC77 1338 aaPredicted RBP16.6■□□□□ 0.25
GGA3-204ENST00000578208 XPCQ01831 940 aaPredicted RBP16.59■□□□□ 0.25
GGA3-204ENST00000578208 USP32Q8NFA0 1604 aa16.59■□□□□ 0.25
GGA3-204ENST00000578208 RGPD8O14715 1765 aaPredicted RBP16.59■□□□□ 0.25
GGA3-204ENST00000578208 PSME1Q06323 249 aa16.58■□□□□ 0.24
GGA3-204ENST00000578208 KRT28Q7Z3Y7 464 aa16.57■□□□□ 0.24
GGA3-204ENST00000578208 ITSN1Q15811 1721 aa16.56■□□□□ 0.24
GGA3-204ENST00000578208 QRICH2Q9H0J4 1663 aa16.56■□□□□ 0.24
GGA3-204ENST00000578208 PMFBP1Q8TBY8 1022 aa16.56■□□□□ 0.24
GGA3-204ENST00000578208 COL22A1Q8NFW1 1626 aaPredicted RBP16.56■□□□□ 0.24
GGA3-204ENST00000578208 NBPF8Q3BBV2 869 aa16.55■□□□□ 0.24
GGA3-204ENST00000578208 CDK19Q9BWU1 502 aa16.55■□□□□ 0.24
GGA3-204ENST00000578208 ATP7BP35670 1465 aa16.54■□□□□ 0.24
GGA3-204ENST00000578208 GPRASP1Q5JY77 1395 aa16.54■□□□□ 0.24
GGA3-204ENST00000578208 PRR36Q9H6K5 1346 aa16.54■□□□□ 0.24
GGA3-204ENST00000578208 CLSPNQ9HAW4 1339 aa16.54■□□□□ 0.24
GGA3-204ENST00000578208 NUDT16Q96DE0 195 aaKnown RBP16.54■□□□□ 0.24
GGA3-204ENST00000578208 RALGAPBQ86X10 1494 aa16.54■□□□□ 0.24
GGA3-204ENST00000578208 TNS3Q68CZ2 1445 aa16.53■□□□□ 0.24
GGA3-204ENST00000578208 SPATA31A3Q5VYP0 1347 aa16.53■□□□□ 0.24
GGA3-204ENST00000578208 SRPK2P78362 688 aaKnown RBP16.53■□□□□ 0.24
GGA3-204ENST00000578208 ZNF772Q68DY9 489 aaPredicted RBP16.53■□□□□ 0.24
GGA3-204ENST00000578208 NGDNQ8NEJ9 315 aaKnown RBP16.53■□□□□ 0.24
GGA3-204ENST00000578208 CARD11Q9BXL7 1154 aa16.53■□□□□ 0.24
GGA3-204ENST00000578208 RGS17Q9UGC6 210 aaPredicted RBP16.53■□□□□ 0.24
GGA3-204ENST00000578208 ADAMTS2O95450 1211 aa16.52■□□□□ 0.24
GGA3-204ENST00000578208 SBNO1A3KN83 1393 aa16.51■□□□□ 0.23
GGA3-204ENST00000578208 LMOD2Q6P5Q4 547 aa16.51■□□□□ 0.23
GGA3-204ENST00000578208 C8orf37Q96NL8 207 aa16.51■□□□□ 0.23
GGA3-204ENST00000578208 ARHGEF10O15013 1369 aa16.51■□□□□ 0.23
GGA3-204ENST00000578208 HAP1P54257 671 aaPredicted RBP16.5■□□□□ 0.23
GGA3-204ENST00000578208 AFF2P51816 1311 aa16.49■□□□□ 0.23
GGA3-204ENST00000578208 EVC2Q86UK5 1308 aa16.49■□□□□ 0.23
GGA3-204ENST00000578208 CCDC61Q9Y6R9 512 aa16.49■□□□□ 0.23
GGA3-204ENST00000578208 TOPAZ1Q8N9V7 1692 aa16.49■□□□□ 0.23
GGA3-204ENST00000578208 SOCS7O14512 581 aa16.48■□□□□ 0.23
GGA3-204ENST00000578208 POTEAQ6S8J7 498 aa16.48■□□□□ 0.23
GGA3-204ENST00000578208 CCER1Q8TC90 406 aaPredicted RBP16.48■□□□□ 0.23
GGA3-204ENST00000578208 NGLY1Q96IV0 654 aa16.48■□□□□ 0.23
GGA3-204ENST00000578208 CABP2Q9NPB3 220 aa16.47■□□□□ 0.23
GGA3-204ENST00000578208 TRPM3Q9HCF6 1732 aaPredicted RBP16.46■□□□□ 0.23
GGA3-204ENST00000578208 PAK3O75914 559 aaPredicted RBP16.46■□□□□ 0.23
GGA3-204ENST00000578208 TIMELESSQ9UNS1 1208 aa16.46■□□□□ 0.23
GGA3-204ENST00000578208 PPIP5K1Q6PFW1 1433 aa16.45■□□□□ 0.22
GGA3-204ENST00000578208 PLEKHG5O94827 1062 aa16.45■□□□□ 0.22
GGA3-204ENST00000578208 ACEP12821 1306 aa16.45■□□□□ 0.22
GGA3-204ENST00000578208 POLR3AO14802 1390 aaPredicted RBP16.44■□□□□ 0.22
GGA3-204ENST00000578208 PLEKHG3A1L390 1219 aa16.44■□□□□ 0.22
GGA3-204ENST00000578208 SBNO2Q9Y2G9 1366 aa16.43■□□□□ 0.22
GGA3-204ENST00000578208 MARF1Q9Y4F3 1742 aaKnown RBP16.43■□□□□ 0.22
GGA3-204ENST00000578208 ALS2Q96Q42 1657 aa16.43■□□□□ 0.22
GGA3-204ENST00000578208 USP21Q9UK80 565 aa16.42■□□□□ 0.22
GGA3-204ENST00000578208 ATAD2Q6PL18 1390 aa16.41■□□□□ 0.22
GGA3-204ENST00000578208 RXRBP28702 533 aa16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms