RNA–Protein interactions for RNA: ENST00000577085.1

SF3B3-215, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 4

Gene SF3B3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-215ENST00000577085 DDX17Q92841 729 aaKnown RBP22.59■■□□□ 1.21
SF3B3-215ENST00000577085 ORAI2Q96SN7 254 aa22.59■■□□□ 1.21
SF3B3-215ENST00000577085 NHSL1Q5SYE7 1610 aa22.59■■□□□ 1.21
SF3B3-215ENST00000577085 KNDC1Q76NI1 1749 aa22.59■■□□□ 1.21
SF3B3-215ENST00000577085 CDC42BPGQ6DT37 1551 aa22.59■■□□□ 1.21
SF3B3-215ENST00000577085 NUTM2BA6NNL0 878 aaPredicted RBP22.58■■□□□ 1.21
SF3B3-215ENST00000577085 NUTM2EB1AL46 878 aaPredicted RBP22.58■■□□□ 1.21
SF3B3-215ENST00000577085 ESCO1Q5FWF5 840 aa22.58■■□□□ 1.21
SF3B3-215ENST00000577085 NUTM2AQ8IVF1 878 aaPredicted RBP22.58■■□□□ 1.21
SF3B3-215ENST00000577085 STAC3Q96MF2 364 aa22.58■■□□□ 1.21
SF3B3-215ENST00000577085 SHPRHQ149N8 1683 aa22.58■■□□□ 1.2
SF3B3-215ENST00000577085 RGS17Q9UGC6 210 aaPredicted RBP22.57■■□□□ 1.2
SF3B3-215ENST00000577085 PLEKHH1Q9ULM0 1364 aa22.56■■□□□ 1.2
SF3B3-215ENST00000577085 NUTM2FA1L443 756 aa22.55■■□□□ 1.2
SF3B3-215ENST00000577085 SIRT1Q96EB6 747 aa22.55■■□□□ 1.2
SF3B3-215ENST00000577085 POGKQ9P215 609 aa22.55■■□□□ 1.2
SF3B3-215ENST00000577085 SAFB2Q14151 953 aaKnown RBP eCLIP22.53■■□□□ 1.2
SF3B3-215ENST00000577085 PRAM1Q96QH2 718 aa22.53■■□□□ 1.2
SF3B3-215ENST00000577085 LRP6O75581 1613 aa22.52■■□□□ 1.2
SF3B3-215ENST00000577085 NPHP3Q7Z494 1330 aa22.52■■□□□ 1.2
SF3B3-215ENST00000577085 TRAK1Q9UPV9 953 aa22.5■■□□□ 1.19
SF3B3-215ENST00000577085 ZNF772Q68DY9 489 aaPredicted RBP22.49■■□□□ 1.19
SF3B3-215ENST00000577085 POTEAQ6S8J7 498 aa22.49■■□□□ 1.19
SF3B3-215ENST00000577085 SOS2Q07890 1332 aaPredicted RBP22.49■■□□□ 1.19
SF3B3-215ENST00000577085 PNPLA6Q8IY17 1366 aa22.49■■□□□ 1.19
SF3B3-215ENST00000577085 FOXO3O43524 673 aa22.47■■□□□ 1.19
SF3B3-215ENST00000577085 DLC1Q96QB1 1528 aa22.47■■□□□ 1.19
SF3B3-215ENST00000577085 ADGRB1O14514 1584 aa22.45■■□□□ 1.18
SF3B3-215ENST00000577085 FMN2Q9NZ56 1722 aa22.45■■□□□ 1.18
SF3B3-215ENST00000577085 XPCQ01831 940 aaPredicted RBP22.44■■□□□ 1.18
SF3B3-215ENST00000577085 C8orf37Q96NL8 207 aa22.44■■□□□ 1.18
SF3B3-215ENST00000577085 ADAMTS2O95450 1211 aa22.42■■□□□ 1.18
SF3B3-215ENST00000577085 HIRIP3Q9BW71 556 aaPredicted RBP22.41■■□□□ 1.18
SF3B3-215ENST00000577085 KIF1AQ12756 1690 aa22.4■■□□□ 1.18
SF3B3-215ENST00000577085 AFF2P51816 1311 aa22.4■■□□□ 1.18
SF3B3-215ENST00000577085 MINK1Q8N4C8 1332 aaPredicted RBP22.39■■□□□ 1.18
SF3B3-215ENST00000577085 PHF8Q9UPP1 1060 aa22.39■■□□□ 1.17
SF3B3-215ENST00000577085 PXDNQ92626 1479 aa22.39■■□□□ 1.17
SF3B3-215ENST00000577085 EIF3AQ14152 1382 aaKnown RBP22.38■■□□□ 1.17
SF3B3-215ENST00000577085 NGLY1Q96IV0 654 aa22.38■■□□□ 1.17
SF3B3-215ENST00000577085 PSME1Q06323 249 aa22.37■■□□□ 1.17
SF3B3-215ENST00000577085 NEUROD1Q13562 356 aa22.36■■□□□ 1.17
SF3B3-215ENST00000577085 KRT28Q7Z3Y7 464 aa22.36■■□□□ 1.17
SF3B3-215ENST00000577085 ADGRB2O60241 1585 aa22.35■■□□□ 1.17
SF3B3-215ENST00000577085 RXRBP28702 533 aa22.35■■□□□ 1.17
SF3B3-215ENST00000577085 ANKARQ7Z5J8 1434 aa22.34■■□□□ 1.17
SF3B3-215ENST00000577085 COL22A1Q8NFW1 1626 aaPredicted RBP22.32■■□□□ 1.16
SF3B3-215ENST00000577085 WASLO00401 505 aaPredicted RBP22.32■■□□□ 1.16
SF3B3-215ENST00000577085 HAP1P54257 671 aaPredicted RBP22.32■■□□□ 1.16
SF3B3-215ENST00000577085 PMFBP1Q8TBY8 1022 aa22.32■■□□□ 1.16
SF3B3-215ENST00000577085 SIN3AQ96ST3 1273 aa22.32■■□□□ 1.16
SF3B3-215ENST00000577085 RGPD8O14715 1765 aaPredicted RBP22.32■■□□□ 1.16
SF3B3-215ENST00000577085 KIAA1210Q9ULL0 1709 aa22.31■■□□□ 1.16
SF3B3-215ENST00000577085 TRIM26Q12899 539 aaPredicted RBP22.31■■□□□ 1.16
SF3B3-215ENST00000577085 LMOD2Q6P5Q4 547 aa22.31■■□□□ 1.16
SF3B3-215ENST00000577085 L3MBTL2Q969R5 705 aa22.31■■□□□ 1.16
SF3B3-215ENST00000577085 SPATA31A3Q5VYP0 1347 aa22.31■■□□□ 1.16
SF3B3-215ENST00000577085 QTRT2Q9H974 415 aaKnown RBP22.3■■□□□ 1.16
SF3B3-215ENST00000577085 ARHGEF28Q8N1W1 1705 aaKnown RBP22.3■■□□□ 1.16
SF3B3-215ENST00000577085 USP21Q9UK80 565 aa22.29■■□□□ 1.16
SF3B3-215ENST00000577085 TULP4Q9NRJ4 1543 aa22.29■■□□□ 1.16
SF3B3-215ENST00000577085 NBPF1Q3BBV0 1214 aa22.28■■□□□ 1.16
SF3B3-215ENST00000577085 GPRASP1Q5JY77 1395 aa22.27■■□□□ 1.16
SF3B3-215ENST00000577085 PLEKHG5O94827 1062 aa22.27■■□□□ 1.16
SF3B3-215ENST00000577085 TNS3Q68CZ2 1445 aa22.27■■□□□ 1.16
SF3B3-215ENST00000577085 NGDNQ8NEJ9 315 aaKnown RBP22.26■■□□□ 1.15
SF3B3-215ENST00000577085 USP32Q8NFA0 1604 aa22.26■■□□□ 1.15
SF3B3-215ENST00000577085 SBNO1A3KN83 1393 aa22.25■■□□□ 1.15
SF3B3-215ENST00000577085 RBM6P78332 1123 aaKnown RBP22.25■■□□□ 1.15
SF3B3-215ENST00000577085 ARHGEF10O15013 1369 aa22.25■■□□□ 1.15
SF3B3-215ENST00000577085 PRR36Q9H6K5 1346 aa22.24■■□□□ 1.15
SF3B3-215ENST00000577085 FNBP4Q8N3X1 1017 aaPredicted RBP22.23■■□□□ 1.15
SF3B3-215ENST00000577085 NUDT16Q96DE0 195 aaKnown RBP22.23■■□□□ 1.15
SF3B3-215ENST00000577085 CDK19Q9BWU1 502 aa22.23■■□□□ 1.15
SF3B3-215ENST00000577085 TRPC5Q9UL62 973 aaPredicted RBP22.23■■□□□ 1.15
SF3B3-215ENST00000577085 CENPJQ9HC77 1338 aaPredicted RBP22.22■■□□□ 1.15
SF3B3-215ENST00000577085 PAK3O75914 559 aaPredicted RBP22.21■■□□□ 1.15
SF3B3-215ENST00000577085 CDK12Q9NYV4 1490 aaPredicted RBP22.21■■□□□ 1.15
SF3B3-215ENST00000577085 SRPK2P78362 688 aaKnown RBP22.19■■□□□ 1.14
SF3B3-215ENST00000577085 CABLES1Q8TDN4 633 aa22.19■■□□□ 1.14
SF3B3-215ENST00000577085 ROCK2O75116 1388 aaKnown RBP22.19■■□□□ 1.14
SF3B3-215ENST00000577085 ITSN1Q15811 1721 aa22.19■■□□□ 1.14
SF3B3-215ENST00000577085 MARF1Q9Y4F3 1742 aaKnown RBP22.18■■□□□ 1.14
SF3B3-215ENST00000577085 ATP7BP35670 1465 aa22.17■■□□□ 1.14
SF3B3-215ENST00000577085 TONSLQ96HA7 1378 aa22.17■■□□□ 1.14
SF3B3-215ENST00000577085 CCDC61Q9Y6R9 512 aa22.16■■□□□ 1.14
SF3B3-215ENST00000577085 RGS12O14924 1447 aa22.14■■□□□ 1.13
SF3B3-215ENST00000577085 TRPM1Q7Z4N2 1603 aa22.13■■□□□ 1.13
SF3B3-215ENST00000577085 BCL9LQ86UU0 1499 aa22.13■■□□□ 1.13
SF3B3-215ENST00000577085 ATRNO75882 1429 aa22.13■■□□□ 1.13
SF3B3-215ENST00000577085 QRICH2Q9H0J4 1663 aa22.12■■□□□ 1.13
SF3B3-215ENST00000577085 UNC5CLQ8IV45 518 aa22.12■■□□□ 1.13
SF3B3-215ENST00000577085 TRPM3Q9HCF6 1732 aaPredicted RBP22.11■■□□□ 1.13
SF3B3-215ENST00000577085 CABP2Q9NPB3 220 aa22.11■■□□□ 1.13
SF3B3-215ENST00000577085 ACEP12821 1306 aa22.1■■□□□ 1.13
SF3B3-215ENST00000577085 EVC2Q86UK5 1308 aa22.09■■□□□ 1.13
SF3B3-215ENST00000577085 GJD4Q96KN9 370 aaPredicted RBP22.09■■□□□ 1.13
SF3B3-215ENST00000577085 PPIP5K1Q6PFW1 1433 aa22.08■■□□□ 1.13
SF3B3-215ENST00000577085 SLIT2O94813 1529 aa22.08■■□□□ 1.13
SF3B3-215ENST00000577085 PLEKHG3A1L390 1219 aa22.08■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms