RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 CCNB3Q8WWL7 1395 aa9.83□□□□□ -0.84
VPS53-217ENST00000575100 ADGBQ8N7X0 1667 aa9.83□□□□□ -0.84
VPS53-217ENST00000575100 CAMSAP1Q5T5Y3 1602 aa9.83□□□□□ -0.84
VPS53-217ENST00000575100 NCKAP5LQ9HCH0 1330 aa9.82□□□□□ -0.84
VPS53-217ENST00000575100 ZNF644Q9H582 1327 aaPredicted RBP9.82□□□□□ -0.84
VPS53-217ENST00000575100 ACIN1Q9UKV3 1341 aaKnown RBP9.82□□□□□ -0.84
VPS53-217ENST00000575100 SPATA31D1Q6ZQQ2 1576 aa9.81□□□□□ -0.84
VPS53-217ENST00000575100 PPP1R37O75864 691 aa9.81□□□□□ -0.84
VPS53-217ENST00000575100 ESF1Q9H501 851 aaKnown RBP9.81□□□□□ -0.84
VPS53-217ENST00000575100 MINK1Q8N4C8 1332 aaPredicted RBP9.81□□□□□ -0.84
VPS53-217ENST00000575100 SND1Q7KZF4 910 aaKnown RBP eCLIP9.81□□□□□ -0.84
VPS53-217ENST00000575100 BCL11AQ9H165 835 aa9.81□□□□□ -0.84
VPS53-217ENST00000575100 PLA2R1Q13018 1463 aa9.8□□□□□ -0.84
VPS53-217ENST00000575100 A2MP01023 1474 aa9.8□□□□□ -0.84
VPS53-217ENST00000575100 CEP170BQ9Y4F5 1589 aaPredicted RBP9.79□□□□□ -0.84
VPS53-217ENST00000575100 ZMYM3Q14202 1370 aa9.79□□□□□ -0.84
VPS53-217ENST00000575100 FAM50AQ14320 339 aaKnown RBP9.79□□□□□ -0.84
VPS53-217ENST00000575100 CCDC102AQ96A19 550 aa9.79□□□□□ -0.84
VPS53-217ENST00000575100 PTPRKQ15262 1439 aa9.79□□□□□ -0.84
VPS53-217ENST00000575100 SPAG9O60271 1321 aaKnown RBP9.79□□□□□ -0.84
VPS53-217ENST00000575100 MFSD10Q14728 455 aa9.79□□□□□ -0.84
VPS53-217ENST00000575100 COG6Q9Y2V7 657 aa9.79□□□□□ -0.84
VPS53-217ENST00000575100 PTPN23Q9H3S7 1636 aa9.79□□□□□ -0.84
VPS53-217ENST00000575100 TCOF1Q13428 1488 aaKnown RBP9.78□□□□□ -0.84
VPS53-217ENST00000575100 DISP3Q9P2K9 1392 aa9.78□□□□□ -0.84
VPS53-217ENST00000575100 ITGAEP38570 1179 aa9.78□□□□□ -0.84
VPS53-217ENST00000575100 CAMK2BQ13554 666 aa9.78□□□□□ -0.84
VPS53-217ENST00000575100 CFDP1Q9UEE9 299 aaPredicted RBP9.77□□□□□ -0.84
VPS53-217ENST00000575100 MIA2Q96PC5 1412 aa9.77□□□□□ -0.84
VPS53-217ENST00000575100 FAM135AQ9P2D6 1515 aa9.77□□□□□ -0.85
VPS53-217ENST00000575100 RBM47A0AV96 593 aaKnown RBP9.77□□□□□ -0.85
VPS53-217ENST00000575100 USTQ9Y2C2 406 aa9.77□□□□□ -0.85
VPS53-217ENST00000575100 HNRNPMP52272 730 aaKnown RBP eCLIP9.76□□□□□ -0.85
VPS53-217ENST00000575100 ILDR2Q71H61 639 aa9.76□□□□□ -0.85
VPS53-217ENST00000575100 ZNF330Q9Y3S2 320 aaPredicted RBP9.76□□□□□ -0.85
VPS53-217ENST00000575100 POLR1AO95602 1720 aaPredicted RBP9.76□□□□□ -0.85
VPS53-217ENST00000575100 MAP2K5Q13163 448 aa9.75□□□□□ -0.85
VPS53-217ENST00000575100 CAMSAP2Q08AD1 1489 aa9.75□□□□□ -0.85
VPS53-217ENST00000575100 MBD5Q9P267 1494 aa9.75□□□□□ -0.85
VPS53-217ENST00000575100 RTEL1-TNFRSF6BF6WH68 1400 aa9.75□□□□□ -0.85
VPS53-217ENST00000575100 SOCS7O14512 581 aa9.75□□□□□ -0.85
VPS53-217ENST00000575100 LARP6Q9BRS8 491 aaKnown RBP9.75□□□□□ -0.85
VPS53-217ENST00000575100 IVNS1ABPQ9Y6Y0 642 aa9.75□□□□□ -0.85
VPS53-217ENST00000575100 DNMT1P26358 1616 aaKnown RBP9.75□□□□□ -0.85
VPS53-217ENST00000575100 A2ML1A8K2U0 1454 aa9.74□□□□□ -0.85
VPS53-217ENST00000575100 IRF6O14896 467 aa9.74□□□□□ -0.85
VPS53-217ENST00000575100 PYGBP11216 843 aa9.74□□□□□ -0.85
VPS53-217ENST00000575100 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.74□□□□□ -0.85
VPS53-217ENST00000575100 SH3D19Q5HYK7 790 aa9.74□□□□□ -0.85
VPS53-217ENST00000575100 SPATA32Q96LK8 384 aa9.74□□□□□ -0.85
VPS53-217ENST00000575100 CERS3Q8IU89 383 aa9.73□□□□□ -0.85
VPS53-217ENST00000575100 KIAA1522Q9P206 1035 aaPredicted RBP9.72□□□□□ -0.85
VPS53-217ENST00000575100 SMARCA5O60264 1052 aaPredicted RBP9.72□□□□□ -0.85
VPS53-217ENST00000575100 ZNF335Q9H4Z2 1342 aaPredicted RBP9.72□□□□□ -0.85
VPS53-217ENST00000575100 NEURL4Q96JN8 1562 aa9.72□□□□□ -0.85
VPS53-217ENST00000575100 KDM5DQ9BY66 1539 aa9.71□□□□□ -0.86
VPS53-217ENST00000575100 ABCC5O15440 1437 aa9.71□□□□□ -0.86
VPS53-217ENST00000575100 DHX29Q7Z478 1369 aaKnown RBP9.71□□□□□ -0.86
VPS53-217ENST00000575100 SPDYE5A6NIY4 337 aa9.71□□□□□ -0.86
VPS53-217ENST00000575100 OXER1Q8TDS5 423 aa9.71□□□□□ -0.86
VPS53-217ENST00000575100 PZPP20742 1482 aa9.7□□□□□ -0.86
VPS53-217ENST00000575100 DAPK1P53355 1430 aa9.7□□□□□ -0.86
VPS53-217ENST00000575100 MS4A1P11836 297 aa9.7□□□□□ -0.86
VPS53-217ENST00000575100 TAF7LQ5H9L4 462 aa9.7□□□□□ -0.86
VPS53-217ENST00000575100 CHIC2Q9UKJ5 165 aa9.7□□□□□ -0.86
VPS53-217ENST00000575100 ARHGEF5Q12774 1597 aa9.7□□□□□ -0.86
VPS53-217ENST00000575100 CPS1P31327 1500 aa9.7□□□□□ -0.86
VPS53-217ENST00000575100 CCDC141Q6ZP82 1450 aa9.7□□□□□ -0.86
VPS53-217ENST00000575100 RASEFQ8IZ41 740 aa9.7□□□□□ -0.86
VPS53-217ENST00000575100 GGT6Q6P531 493 aa9.69□□□□□ -0.86
VPS53-217ENST00000575100 DEPDC5O75140 1603 aa9.69□□□□□ -0.86
VPS53-217ENST00000575100 PDE4AP27815 886 aa9.68□□□□□ -0.86
VPS53-217ENST00000575100 PBXIP1Q96AQ6 731 aa9.68□□□□□ -0.86
VPS53-217ENST00000575100 RNF17Q9BXT8 1623 aaKnown RBP9.68□□□□□ -0.86
VPS53-217ENST00000575100 DDX27Q96GQ7 796 aaKnown RBP9.68□□□□□ -0.86
VPS53-217ENST00000575100 CRISPLD2Q9H0B8 497 aa9.68□□□□□ -0.86
VPS53-217ENST00000575100 ZC3H13Q5T200 1668 aaKnown RBP9.68□□□□□ -0.86
VPS53-217ENST00000575100 TNRQ92752 1358 aa9.67□□□□□ -0.86
VPS53-217ENST00000575100 TTLL12Q14166 644 aaPredicted RBP9.67□□□□□ -0.86
VPS53-217ENST00000575100 CC2D2BQ6DHV5 1058 aa9.67□□□□□ -0.86
VPS53-217ENST00000575100 FBXO22Q8NEZ5 403 aa9.67□□□□□ -0.86
VPS53-217ENST00000575100 VWDEQ8N2E2 1590 aa9.67□□□□□ -0.86
VPS53-217ENST00000575100 MAST1Q9Y2H9 1570 aa9.67□□□□□ -0.86
VPS53-217ENST00000575100 NLRP1Q9C000 1473 aa9.67□□□□□ -0.86
VPS53-217ENST00000575100 UBAP1LF5GYI3 381 aa9.66□□□□□ -0.86
VPS53-217ENST00000575100 CROCC2H7BZ55 1655 aa9.66□□□□□ -0.86
VPS53-217ENST00000575100 MED14O60244 1454 aa9.66□□□□□ -0.86
VPS53-217ENST00000575100 EIF2AK4Q9P2K8 1649 aaKnown RBP9.66□□□□□ -0.86
VPS53-217ENST00000575100 TBC1D12O60347 775 aa9.66□□□□□ -0.86
VPS53-217ENST00000575100 DRC1Q96MC2 740 aa9.66□□□□□ -0.86
VPS53-217ENST00000575100 RRP7BPQ9NSQ0 103 aa9.66□□□□□ -0.86
VPS53-217ENST00000575100 SHANK2Q9UPX8 1470 aa9.65□□□□□ -0.86
VPS53-217ENST00000575100 GIGYF2Q6Y7W6 1299 aaKnown RBP9.65□□□□□ -0.86
VPS53-217ENST00000575100 TXNDC2Q86VQ3 553 aa9.65□□□□□ -0.86
VPS53-217ENST00000575100 MRRFQ96E11 262 aaKnown RBP9.65□□□□□ -0.86
VPS53-217ENST00000575100 CALR3Q96L12 384 aaKnown RBP9.65□□□□□ -0.86
VPS53-217ENST00000575100 NAIPQ13075 1403 aa9.65□□□□□ -0.87
VPS53-217ENST00000575100 MNX1P50219 401 aaPredicted RBP9.64□□□□□ -0.87
VPS53-217ENST00000575100 ANKRD13AQ8IZ07 590 aa9.64□□□□□ -0.87
VPS53-217ENST00000575100 MED1Q15648 1581 aaPredicted RBP9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms