RNA–Protein interactions for RNA: ENST00000569916.1

CNOT1-220, Transcript of CCR4-NOT transcription complex subunit 1, humanhuman

TSL 3

Gene CNOT1, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT1-220ENST00000569916 FMN2Q9NZ56 1722 aa19■□□□□ 0.63
CNOT1-220ENST00000569916 KIAA1210Q9ULL0 1709 aa19■□□□□ 0.63
CNOT1-220ENST00000569916 WAPLQ7Z5K2 1190 aa19■□□□□ 0.63
CNOT1-220ENST00000569916 TRIM26Q12899 539 aaPredicted RBP18.99■□□□□ 0.63
CNOT1-220ENST00000569916 ARHGEF28Q8N1W1 1705 aaKnown RBP18.97■□□□□ 0.63
CNOT1-220ENST00000569916 JCADQ9P266 1359 aa18.96■□□□□ 0.63
CNOT1-220ENST00000569916 SIRT1Q96EB6 747 aa18.96■□□□□ 0.63
CNOT1-220ENST00000569916 ADGRB2O60241 1585 aa18.95■□□□□ 0.62
CNOT1-220ENST00000569916 RGPD8O14715 1765 aaPredicted RBP18.93■□□□□ 0.62
CNOT1-220ENST00000569916 ILDR2Q71H61 639 aa18.93■□□□□ 0.62
CNOT1-220ENST00000569916 ORAI2Q96SN7 254 aa18.92■□□□□ 0.62
CNOT1-220ENST00000569916 KIF1AQ12756 1690 aa18.92■□□□□ 0.62
CNOT1-220ENST00000569916 DDX17Q92841 729 aaKnown RBP18.91■□□□□ 0.62
CNOT1-220ENST00000569916 PRAM1Q96QH2 718 aa18.91■□□□□ 0.62
CNOT1-220ENST00000569916 SIN3AQ96ST3 1273 aa18.91■□□□□ 0.62
CNOT1-220ENST00000569916 PHF23Q9BUL5 403 aaPredicted RBP18.91■□□□□ 0.62
CNOT1-220ENST00000569916 LRP6O75581 1613 aa18.9■□□□□ 0.62
CNOT1-220ENST00000569916 USP32Q8NFA0 1604 aa18.89■□□□□ 0.62
CNOT1-220ENST00000569916 TRAK1Q9UPV9 953 aa18.89■□□□□ 0.61
CNOT1-220ENST00000569916 TRPM1Q7Z4N2 1603 aa18.88■□□□□ 0.61
CNOT1-220ENST00000569916 SAFB2Q14151 953 aaKnown RBP eCLIP18.87■□□□□ 0.61
CNOT1-220ENST00000569916 SPATA31A6Q5VVP1 1343 aa18.87■□□□□ 0.61
CNOT1-220ENST00000569916 L3MBTL2Q969R5 705 aa18.87■□□□□ 0.61
CNOT1-220ENST00000569916 PXDNQ92626 1479 aa18.86■□□□□ 0.61
CNOT1-220ENST00000569916 NUTM2FA1L443 756 aa18.86■□□□□ 0.61
CNOT1-220ENST00000569916 POGKQ9P215 609 aa18.86■□□□□ 0.61
CNOT1-220ENST00000569916 SOS2Q07890 1332 aaPredicted RBP18.85■□□□□ 0.61
CNOT1-220ENST00000569916 ESCO1Q5FWF5 840 aa18.85■□□□□ 0.61
CNOT1-220ENST00000569916 PNPLA6Q8IY17 1366 aa18.84■□□□□ 0.61
CNOT1-220ENST00000569916 NEUROD1Q13562 356 aa18.84■□□□□ 0.61
CNOT1-220ENST00000569916 LRRC59Q96AG4 307 aaKnown RBP18.84■□□□□ 0.61
CNOT1-220ENST00000569916 COL22A1Q8NFW1 1626 aaPredicted RBP18.84■□□□□ 0.61
CNOT1-220ENST00000569916 RGS17Q9UGC6 210 aaPredicted RBP18.83■□□□□ 0.6
CNOT1-220ENST00000569916 ANKARQ7Z5J8 1434 aa18.83■□□□□ 0.6
CNOT1-220ENST00000569916 NPHP3Q7Z494 1330 aa18.82■□□□□ 0.6
CNOT1-220ENST00000569916 NBPF1Q3BBV0 1214 aa18.82■□□□□ 0.6
CNOT1-220ENST00000569916 TULP4Q9NRJ4 1543 aa18.82■□□□□ 0.6
CNOT1-220ENST00000569916 ITSN1Q15811 1721 aa18.8■□□□□ 0.6
CNOT1-220ENST00000569916 MINK1Q8N4C8 1332 aaPredicted RBP18.8■□□□□ 0.6
CNOT1-220ENST00000569916 HIRIP3Q9BW71 556 aaPredicted RBP18.8■□□□□ 0.6
CNOT1-220ENST00000569916 QRICH2Q9H0J4 1663 aa18.79■□□□□ 0.6
CNOT1-220ENST00000569916 FOXO3O43524 673 aa18.78■□□□□ 0.6
CNOT1-220ENST00000569916 TOPAZ1Q8N9V7 1692 aa18.77■□□□□ 0.6
CNOT1-220ENST00000569916 EIF3AQ14152 1382 aaKnown RBP18.77■□□□□ 0.6
CNOT1-220ENST00000569916 XPCQ01831 940 aaPredicted RBP18.76■□□□□ 0.59
CNOT1-220ENST00000569916 MARF1Q9Y4F3 1742 aaKnown RBP18.76■□□□□ 0.59
CNOT1-220ENST00000569916 ATP7BP35670 1465 aa18.76■□□□□ 0.59
CNOT1-220ENST00000569916 PRR36Q9H6K5 1346 aa18.75■□□□□ 0.59
CNOT1-220ENST00000569916 TRPM3Q9HCF6 1732 aaPredicted RBP18.75■□□□□ 0.59
CNOT1-220ENST00000569916 NUTM2BA6NNL0 878 aaPredicted RBP18.75■□□□□ 0.59
CNOT1-220ENST00000569916 NUTM2EB1AL46 878 aaPredicted RBP18.75■□□□□ 0.59
CNOT1-220ENST00000569916 WASLO00401 505 aaPredicted RBP18.75■□□□□ 0.59
CNOT1-220ENST00000569916 NUTM2AQ8IVF1 878 aaPredicted RBP18.75■□□□□ 0.59
CNOT1-220ENST00000569916 PHF8Q9UPP1 1060 aa18.75■□□□□ 0.59
CNOT1-220ENST00000569916 MEX3CQ5U5Q3 659 aaKnown RBP18.74■□□□□ 0.59
CNOT1-220ENST00000569916 TONSLQ96HA7 1378 aa18.73■□□□□ 0.59
CNOT1-220ENST00000569916 ABCA3Q99758 1704 aa18.72■□□□□ 0.59
CNOT1-220ENST00000569916 SOCS7O14512 581 aa18.72■□□□□ 0.59
CNOT1-220ENST00000569916 POTEAQ6S8J7 498 aa18.72■□□□□ 0.59
CNOT1-220ENST00000569916 ROCK2O75116 1388 aaKnown RBP18.71■□□□□ 0.59
CNOT1-220ENST00000569916 NBPF8Q3BBV2 869 aa18.71■□□□□ 0.59
CNOT1-220ENST00000569916 TNS3Q68CZ2 1445 aa18.71■□□□□ 0.59
CNOT1-220ENST00000569916 CENPJQ9HC77 1338 aaPredicted RBP18.71■□□□□ 0.59
CNOT1-220ENST00000569916 GPRASP1Q5JY77 1395 aa18.7■□□□□ 0.58
CNOT1-220ENST00000569916 ALS2Q96Q42 1657 aa18.7■□□□□ 0.58
CNOT1-220ENST00000569916 KRT28Q7Z3Y7 464 aa18.7■□□□□ 0.58
CNOT1-220ENST00000569916 RALGAPBQ86X10 1494 aa18.7■□□□□ 0.58
CNOT1-220ENST00000569916 SPATA31A3Q5VYP0 1347 aa18.7■□□□□ 0.58
CNOT1-220ENST00000569916 PMFBP1Q8TBY8 1022 aa18.69■□□□□ 0.58
CNOT1-220ENST00000569916 SBNO1A3KN83 1393 aa18.68■□□□□ 0.58
CNOT1-220ENST00000569916 CDK19Q9BWU1 502 aa18.67■□□□□ 0.58
CNOT1-220ENST00000569916 ZNF772Q68DY9 489 aaPredicted RBP18.66■□□□□ 0.58
CNOT1-220ENST00000569916 NUDT16Q96DE0 195 aaKnown RBP18.66■□□□□ 0.58
CNOT1-220ENST00000569916 PCGF6Q9BYE7 350 aa18.66■□□□□ 0.58
CNOT1-220ENST00000569916 AFF2P51816 1311 aa18.66■□□□□ 0.58
CNOT1-220ENST00000569916 CRYBG1Q9Y4K1 1723 aa18.66■□□□□ 0.58
CNOT1-220ENST00000569916 ADAMTS2O95450 1211 aa18.65■□□□□ 0.58
CNOT1-220ENST00000569916 PSME1Q06323 249 aa18.65■□□□□ 0.58
CNOT1-220ENST00000569916 C8orf37Q96NL8 207 aa18.65■□□□□ 0.58
CNOT1-220ENST00000569916 ARHGEF10O15013 1369 aa18.63■□□□□ 0.57
CNOT1-220ENST00000569916 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.61■□□□□ 0.57
CNOT1-220ENST00000569916 POLR3AO14802 1390 aaPredicted RBP18.61■□□□□ 0.57
CNOT1-220ENST00000569916 PLCH1Q4KWH8 1693 aa18.6■□□□□ 0.57
CNOT1-220ENST00000569916 NGDNQ8NEJ9 315 aaKnown RBP18.6■□□□□ 0.57
CNOT1-220ENST00000569916 SRPK2P78362 688 aaKnown RBP18.59■□□□□ 0.57
CNOT1-220ENST00000569916 NGLY1Q96IV0 654 aa18.59■□□□□ 0.57
CNOT1-220ENST00000569916 CCDC61Q9Y6R9 512 aa18.59■□□□□ 0.57
CNOT1-220ENST00000569916 PHRF1Q9P1Y6 1649 aaKnown RBP18.59■□□□□ 0.57
CNOT1-220ENST00000569916 PPIP5K1Q6PFW1 1433 aa18.58■□□□□ 0.57
CNOT1-220ENST00000569916 CARD11Q9BXL7 1154 aa18.58■□□□□ 0.56
CNOT1-220ENST00000569916 CABP2Q9NPB3 220 aa18.58■□□□□ 0.56
CNOT1-220ENST00000569916 SBNO2Q9Y2G9 1366 aa18.57■□□□□ 0.56
CNOT1-220ENST00000569916 CLSPNQ9HAW4 1339 aa18.57■□□□□ 0.56
CNOT1-220ENST00000569916 PLEKHG3A1L390 1219 aa18.57■□□□□ 0.56
CNOT1-220ENST00000569916 LMOD2Q6P5Q4 547 aa18.57■□□□□ 0.56
CNOT1-220ENST00000569916 FNBP4Q8N3X1 1017 aaPredicted RBP18.57■□□□□ 0.56
CNOT1-220ENST00000569916 NWD2Q9ULI1 1742 aa18.57■□□□□ 0.56
CNOT1-220ENST00000569916 ACEP12821 1306 aa18.56■□□□□ 0.56
CNOT1-220ENST00000569916 EVC2Q86UK5 1308 aa18.56■□□□□ 0.56
CNOT1-220ENST00000569916 CABLES1Q8TDN4 633 aa18.56■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms