RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, human

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-238	ENST00000569430	MPND	Q8N594	471 aa		14.13	□□□□□ -0.15
CLN3-238	ENST00000569430	TBC1D32	Q96NH3	1257 aa		14.13	□□□□□ -0.15
CLN3-238	ENST00000569430	DNMT1	P26358	1616 aa	Known RBP	14.13	□□□□□ -0.15
CLN3-238	ENST00000569430	MVP	Q14764	893 aa	Known RBP	14.13	□□□□□ -0.15
CLN3-238	ENST00000569430	ST18	O60284	1047 aa		14.11	□□□□□ -0.15
CLN3-238	ENST00000569430	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	14.11	□□□□□ -0.15
CLN3-238	ENST00000569430	GGNBP2	Q9H3C7	697 aa		14.11	□□□□□ -0.15
CLN3-238	ENST00000569430	NOB1	Q9ULX3	412 aa	Known RBP	14.11	□□□□□ -0.15
CLN3-238	ENST00000569430	NKTR	P30414	1462 aa	Known RBP	14.11	□□□□□ -0.15
CLN3-238	ENST00000569430	PDZRN4	Q6ZMN7	1036 aa	Predicted RBP	14.11	□□□□□ -0.15
CLN3-238	ENST00000569430	AAMP	Q13685	434 aa		14.1	□□□□□ -0.15
CLN3-238	ENST00000569430	PLEKHG5	O94827	1062 aa		14.1	□□□□□ -0.15
CLN3-238	ENST00000569430	SLC4A10	Q6U841	1118 aa		14.1	□□□□□ -0.15
CLN3-238	ENST00000569430	CHAF1A	Q13111	956 aa	Predicted RBP	14.09	□□□□□ -0.15
CLN3-238	ENST00000569430	TESK2	Q96S53	571 aa		14.09	□□□□□ -0.15
CLN3-238	ENST00000569430	PRPF40A	O75400	957 aa	Known RBP	14.08	□□□□□ -0.16
CLN3-238	ENST00000569430	TNPO1	Q92973	898 aa	Known RBP	14.08	□□□□□ -0.16
CLN3-238	ENST00000569430	TRIM6-TRIM34	B2RNG4	842 aa		14.08	□□□□□ -0.16
CLN3-238	ENST00000569430	RLBP1	P12271	317 aa		14.08	□□□□□ -0.16
CLN3-238	ENST00000569430	MCC	P23508	829 aa		14.08	□□□□□ -0.16
CLN3-238	ENST00000569430	CLCN1	P35523	988 aa		14.08	□□□□□ -0.16
CLN3-238	ENST00000569430	DMRT2	Q9Y5R5	561 aa		14.08	□□□□□ -0.16
CLN3-238	ENST00000569430	TPM2	P07951	284 aa		14.07	□□□□□ -0.16
CLN3-238	ENST00000569430	PLPPR3	Q6T4P5	718 aa		14.07	□□□□□ -0.16
CLN3-238	ENST00000569430	RALGAPB	Q86X10	1494 aa		14.07	□□□□□ -0.16
CLN3-238	ENST00000569430	ATF7IP	Q6VMQ6	1270 aa		14.07	□□□□□ -0.16
CLN3-238	ENST00000569430	DRC7	Q8IY82	874 aa		14.07	□□□□□ -0.16
CLN3-238	ENST00000569430	PLEKHH2	Q8IVE3	1493 aa		14.06	□□□□□ -0.16
CLN3-238	ENST00000569430	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	14.06	□□□□□ -0.16
CLN3-238	ENST00000569430	ARHGAP5	Q13017	1502 aa		14.06	□□□□□ -0.16
CLN3-238	ENST00000569430	BCORL1	Q5H9F3	1711 aa		14.06	□□□□□ -0.16
CLN3-238	ENST00000569430	CCDC173	Q0VFZ6	552 aa		14.06	□□□□□ -0.16
CLN3-238	ENST00000569430	SYAP1	Q96A49	352 aa	Predicted RBP	14.06	□□□□□ -0.16
CLN3-238	ENST00000569430	TMEM57	Q8N5G2	664 aa		14.05	□□□□□ -0.16
CLN3-238	ENST00000569430	HMOX1	P09601	288 aa		14.05	□□□□□ -0.16
CLN3-238	ENST00000569430	NUCB2	P80303	420 aa		14.05	□□□□□ -0.16
CLN3-238	ENST00000569430	CFAP44	Q96MT7	982 aa		14.05	□□□□□ -0.16
CLN3-238	ENST00000569430	CABP2	Q9NPB3	220 aa		14.05	□□□□□ -0.16
CLN3-238	ENST00000569430	WDR63	Q8IWG1	891 aa		14.05	□□□□□ -0.16
CLN3-238	ENST00000569430		K7ELQ4	463 aa	Predicted RBP	14.04	□□□□□ -0.16
CLN3-238	ENST00000569430	KIF16B	Q96L93	1317 aa		14.04	□□□□□ -0.16
CLN3-238	ENST00000569430	SSFA2	P28290	1259 aa		14.04	□□□□□ -0.16
CLN3-238	ENST00000569430	SSH1	Q8WYL5	1049 aa		14.04	□□□□□ -0.16
CLN3-238	ENST00000569430	TERF2IP	Q9NYB0	399 aa		14.04	□□□□□ -0.16
CLN3-238	ENST00000569430	KCNJ4	P48050	445 aa		14.04	□□□□□ -0.16
CLN3-238	ENST00000569430	GOLGA6L4	A6NEF3	574 aa		14.03	□□□□□ -0.16
CLN3-238	ENST00000569430	RILPL2	Q969X0	211 aa		14.03	□□□□□ -0.16
CLN3-238	ENST00000569430	DIAPH1	O60610	1272 aa	Known RBP	14.03	□□□□□ -0.16
CLN3-238	ENST00000569430	CHD1L	Q86WJ1	897 aa		14.03	□□□□□ -0.16
CLN3-238	ENST00000569430	MINK1	Q8N4C8	1332 aa	Predicted RBP	14.03	□□□□□ -0.16
CLN3-238	ENST00000569430	ISY1	Q9ULR0	285 aa	Known RBP	14.03	□□□□□ -0.16
CLN3-238	ENST00000569430	ZSCAN30	Q86W11	494 aa		14.02	□□□□□ -0.16
CLN3-238	ENST00000569430	CDC45	O75419	566 aa		14.02	□□□□□ -0.17
CLN3-238	ENST00000569430	OS9	Q13438	667 aa	Predicted RBP	14.01	□□□□□ -0.17
CLN3-238	ENST00000569430	TAOK2	Q9UL54	1235 aa		14.01	□□□□□ -0.17
CLN3-238	ENST00000569430	NINL	Q9Y2I6	1382 aa		14.01	□□□□□ -0.17
CLN3-238	ENST00000569430	XPC	Q01831	940 aa	Predicted RBP	14.01	□□□□□ -0.17
CLN3-238	ENST00000569430	SYCP2	Q9BX26	1530 aa		14.01	□□□□□ -0.17
CLN3-238	ENST00000569430	EVC2	Q86UK5	1308 aa		14.01	□□□□□ -0.17
CLN3-238	ENST00000569430	TRIM27	P14373	513 aa		14.01	□□□□□ -0.17
CLN3-238	ENST00000569430	BCL11B	Q9C0K0	894 aa	Predicted RBP	14	□□□□□ -0.17
CLN3-238	ENST00000569430	NUP160	Q12769	1436 aa		14	□□□□□ -0.17
CLN3-238	ENST00000569430		A0A0U1RQG5	324 aa	Predicted RBP	14	□□□□□ -0.17
CLN3-238	ENST00000569430	RBM42	Q9BTD8	480 aa	Known RBP	13.99	□□□□□ -0.17
CLN3-238	ENST00000569430	CIZ1	Q9ULV3	898 aa	Predicted RBP	13.99	□□□□□ -0.17
CLN3-238	ENST00000569430	CHMP3	Q9Y3E7	222 aa		13.99	□□□□□ -0.17
CLN3-238	ENST00000569430	ERCC6L2	Q5T890	1561 aa		13.99	□□□□□ -0.17
CLN3-238	ENST00000569430	UQCRHL	A0A096LP55	91 aa		13.99	□□□□□ -0.17
CLN3-238	ENST00000569430	UQCRH	P07919	91 aa		13.99	□□□□□ -0.17
CLN3-238	ENST00000569430	ESF1	Q9H501	851 aa	Known RBP	13.99	□□□□□ -0.17
CLN3-238	ENST00000569430	REC8	O95072	547 aa		13.98	□□□□□ -0.17
CLN3-238	ENST00000569430	CSPP1	Q1MSJ5	1256 aa		13.98	□□□□□ -0.17
CLN3-238	ENST00000569430	NEK4	P51957	841 aa		13.98	□□□□□ -0.17
CLN3-238	ENST00000569430	ANO2	Q9NQ90	1003 aa		13.98	□□□□□ -0.17
CLN3-238	ENST00000569430	INTS3	Q68E01	1043 aa	Known RBP	13.98	□□□□□ -0.17
CLN3-238	ENST00000569430	HMMR	O75330	724 aa		13.97	□□□□□ -0.17
CLN3-238	ENST00000569430	C14orf37	Q86TY3	774 aa		13.97	□□□□□ -0.17
CLN3-238	ENST00000569430	ABCC10	Q5T3U5	1492 aa		13.97	□□□□□ -0.17
CLN3-238	ENST00000569430	PRAG1	Q86YV5	1406 aa		13.97	□□□□□ -0.17
CLN3-238	ENST00000569430	THUMPD2	Q9BTF0	503 aa	Known RBP	13.97	□□□□□ -0.17
CLN3-238	ENST00000569430	CCDC141	Q6ZP82	1450 aa		13.97	□□□□□ -0.17
CLN3-238	ENST00000569430	PRDM10	Q9NQV6	1147 aa		13.96	□□□□□ -0.17
CLN3-238	ENST00000569430	MBD5	Q9P267	1494 aa		13.96	□□□□□ -0.17
CLN3-238	ENST00000569430	CDK11B	P21127	795 aa	Known RBP	13.96	□□□□□ -0.17
CLN3-238	ENST00000569430	PRKAR2B	P31323	418 aa		13.96	□□□□□ -0.17
CLN3-238	ENST00000569430	PHF14	O94880	888 aa		13.96	□□□□□ -0.18
CLN3-238	ENST00000569430	TMPO	P42166	694 aa	Known RBP	13.96	□□□□□ -0.18
CLN3-238	ENST00000569430	SYCE3	A1L190	88 aa		13.95	□□□□□ -0.18
CLN3-238	ENST00000569430	RABEP1	Q15276	862 aa		13.95	□□□□□ -0.18
CLN3-238	ENST00000569430	FAM135A	Q9P2D6	1515 aa		13.95	□□□□□ -0.18
CLN3-238	ENST00000569430	NSD3	Q9BZ95	1437 aa		13.95	□□□□□ -0.18
CLN3-238	ENST00000569430	HAP1	P54257	671 aa	Predicted RBP	13.95	□□□□□ -0.18
CLN3-238	ENST00000569430	STAC3	Q96MF2	364 aa		13.95	□□□□□ -0.18
CLN3-238	ENST00000569430	PDCL3	Q9H2J4	239 aa		13.95	□□□□□ -0.18
CLN3-238	ENST00000569430	RTF1	Q92541	710 aa	Known RBP	13.94	□□□□□ -0.18
CLN3-238	ENST00000569430	API5	Q9BZZ5	524 aa	Known RBP	13.94	□□□□□ -0.18
CLN3-238	ENST00000569430	NUTM2F	A1L443	756 aa		13.94	□□□□□ -0.18
CLN3-238	ENST00000569430	CCDC39	Q9UFE4	941 aa		13.94	□□□□□ -0.18
CLN3-238	ENST00000569430	NAP1L2	Q9ULW6	460 aa	Predicted RBP	13.94	□□□□□ -0.18
CLN3-238	ENST00000569430	FGD1	P98174	961 aa		13.94	□□□□□ -0.18

Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms