RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 C1orf115Q9H7X2 142 aa18.26■□□□□ 0.51
VPS35-210ENST00000568784 E9PCH4 1651 aa18.25■□□□□ 0.51
VPS35-210ENST00000568784 TRAK2O60296 914 aa18.25■□□□□ 0.51
VPS35-210ENST00000568784 ARHGEF5Q12774 1597 aa18.25■□□□□ 0.51
VPS35-210ENST00000568784 MCM4P33991 863 aa18.25■□□□□ 0.51
VPS35-210ENST00000568784 RIPK4P57078 832 aa18.25■□□□□ 0.51
VPS35-210ENST00000568784 NOB1Q9ULX3 412 aaKnown RBP18.25■□□□□ 0.51
VPS35-210ENST00000568784 INSRP06213 1382 aa18.24■□□□□ 0.51
VPS35-210ENST00000568784 MINK1Q8N4C8 1332 aaPredicted RBP18.24■□□□□ 0.51
VPS35-210ENST00000568784 CHMP5Q9NZZ3 219 aa18.24■□□□□ 0.51
VPS35-210ENST00000568784 STAG3Q9UJ98 1225 aa18.24■□□□□ 0.51
VPS35-210ENST00000568784 ANKRD45Q5TZF3 282 aa18.24■□□□□ 0.51
VPS35-210ENST00000568784 EIF2AK4Q9P2K8 1649 aaKnown RBP18.24■□□□□ 0.51
VPS35-210ENST00000568784 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.24■□□□□ 0.51
VPS35-210ENST00000568784 SSH1Q8WYL5 1049 aa18.24■□□□□ 0.51
VPS35-210ENST00000568784 RSPH6AQ9H0K4 717 aa18.23■□□□□ 0.51
VPS35-210ENST00000568784 DUOX2Q9NRD8 1548 aa18.23■□□□□ 0.51
VPS35-210ENST00000568784 WDR63Q8IWG1 891 aa18.22■□□□□ 0.51
VPS35-210ENST00000568784 STAC3Q96MF2 364 aa18.22■□□□□ 0.51
VPS35-210ENST00000568784 TRIM27P14373 513 aa18.21■□□□□ 0.51
VPS35-210ENST00000568784 DDX19BQ9UMR2 479 aa18.21■□□□□ 0.51
VPS35-210ENST00000568784 TMEM57Q8N5G2 664 aa18.21■□□□□ 0.51
VPS35-210ENST00000568784 RRAGDQ9NQL2 400 aaPredicted RBP18.21■□□□□ 0.51
VPS35-210ENST00000568784 FBLN1P23142 703 aa18.2■□□□□ 0.5
VPS35-210ENST00000568784 TTC37Q6PGP7 1564 aa18.2■□□□□ 0.5
VPS35-210ENST00000568784 EVC2Q86UK5 1308 aa18.19■□□□□ 0.5
VPS35-210ENST00000568784 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.19■□□□□ 0.5
VPS35-210ENST00000568784 NPM1P06748 294 aaKnown RBP eCLIP18.19■□□□□ 0.5
VPS35-210ENST00000568784 XRCC6P12956 609 aaKnown RBP eCLIP18.19■□□□□ 0.5
VPS35-210ENST00000568784 HMOX1P09601 288 aa18.19■□□□□ 0.5
VPS35-210ENST00000568784 THUMPD2Q9BTF0 503 aaKnown RBP18.18■□□□□ 0.5
VPS35-210ENST00000568784 NOS1P29475 1434 aa18.18■□□□□ 0.5
VPS35-210ENST00000568784 IPO8O15397 1037 aaKnown RBP18.18■□□□□ 0.5
VPS35-210ENST00000568784 ATF7IPQ6VMQ6 1270 aa18.18■□□□□ 0.5
VPS35-210ENST00000568784 TPRNQ4KMQ1 711 aa18.17■□□□□ 0.5
VPS35-210ENST00000568784 PLCH2O75038 1416 aa18.16■□□□□ 0.5
VPS35-210ENST00000568784 NINLQ9Y2I6 1382 aa18.16■□□□□ 0.5
VPS35-210ENST00000568784 CDC42BPBQ9Y5S2 1711 aa18.16■□□□□ 0.5
VPS35-210ENST00000568784 MAST1Q9Y2H9 1570 aa18.16■□□□□ 0.5
VPS35-210ENST00000568784 TMPOP42166 694 aaKnown RBP18.16■□□□□ 0.5
VPS35-210ENST00000568784 UGGT1Q9NYU2 1555 aa18.16■□□□□ 0.5
VPS35-210ENST00000568784 POLR3AO14802 1390 aaPredicted RBP18.15■□□□□ 0.5
VPS35-210ENST00000568784 ANP32BQ92688 251 aaKnown RBP18.15■□□□□ 0.5
VPS35-210ENST00000568784 ATP10AO60312 1499 aa18.15■□□□□ 0.5
VPS35-210ENST00000568784 PREX2Q70Z35 1606 aa18.13■□□□□ 0.49
VPS35-210ENST00000568784 NPC1L1Q9UHC9 1359 aa18.13■□□□□ 0.49
VPS35-210ENST00000568784 SOX12O15370 315 aa18.12■□□□□ 0.49
VPS35-210ENST00000568784 DIAPH1O60610 1272 aaKnown RBP18.12■□□□□ 0.49
VPS35-210ENST00000568784 GBP4Q96PP9 640 aa18.12■□□□□ 0.49
VPS35-210ENST00000568784 ANTXR1Q9H6X2 564 aa18.12■□□□□ 0.49
VPS35-210ENST00000568784 ERVK-7P63135 1459 aa18.12■□□□□ 0.49
VPS35-210ENST00000568784 CFAP65Q6ZU64 1925 aaKnown RBP18.11■□□□□ 0.49
VPS35-210ENST00000568784 DDX11L8A8MPP1 907 aa18.11■□□□□ 0.49
VPS35-210ENST00000568784 GOLGA6L22H0YM25 854 aa18.11■□□□□ 0.49
VPS35-210ENST00000568784 FOXD4L5Q5VV16 416 aaPredicted RBP18.11■□□□□ 0.49
VPS35-210ENST00000568784 FOXD4L4Q8WXT5 416 aaPredicted RBP18.11■□□□□ 0.49
VPS35-210ENST00000568784 ZBTB7CA1YPR0 619 aa18.1■□□□□ 0.49
VPS35-210ENST00000568784 PRKAR2BP31323 418 aa18.1■□□□□ 0.49
VPS35-210ENST00000568784 AAMPQ13685 434 aa18.1■□□□□ 0.49
VPS35-210ENST00000568784 RBM42Q9BTD8 480 aaKnown RBP18.1■□□□□ 0.49
VPS35-210ENST00000568784 MYO5CQ9NQX4 1742 aa18.1■□□□□ 0.49
VPS35-210ENST00000568784 TERF2IPQ9NYB0 399 aa18.09■□□□□ 0.49
VPS35-210ENST00000568784 HDGFL2Q7Z4V5 671 aaPredicted RBP18.09■□□□□ 0.49
VPS35-210ENST00000568784 GRPEL1Q9HAV7 217 aa18.08■□□□□ 0.49
VPS35-210ENST00000568784 VGFO15240 615 aaPredicted RBP18.08■□□□□ 0.49
VPS35-210ENST00000568784 SYNMO15061 1565 aa18.08■□□□□ 0.48
VPS35-210ENST00000568784 MRE11P49959 708 aa18.08■□□□□ 0.48
VPS35-210ENST00000568784 ABCC2Q92887 1545 aa18.08■□□□□ 0.48
VPS35-210ENST00000568784 CHD1LQ86WJ1 897 aa18.07■□□□□ 0.48
VPS35-210ENST00000568784 DDX49Q9Y6V7 483 aaKnown RBP18.07■□□□□ 0.48
VPS35-210ENST00000568784 IQGAP3Q86VI3 1631 aa18.07■□□□□ 0.48
VPS35-210ENST00000568784 UNC13BO14795 1591 aa18.07■□□□□ 0.48
VPS35-210ENST00000568784 C14orf93Q9H972 538 aaKnown RBP18.07■□□□□ 0.48
VPS35-210ENST00000568784 TNPO1Q92973 898 aaKnown RBP18.06■□□□□ 0.48
VPS35-210ENST00000568784 PRAM1Q96QH2 718 aa18.06■□□□□ 0.48
VPS35-210ENST00000568784 KIF16BQ96L93 1317 aa18.06■□□□□ 0.48
VPS35-210ENST00000568784 PTPRTO14522 1441 aa18.06■□□□□ 0.48
VPS35-210ENST00000568784 ERCC6L2Q5T890 1561 aa18.06■□□□□ 0.48
VPS35-210ENST00000568784 NOL8Q76FK4 1167 aaKnown RBP18.04■□□□□ 0.48
VPS35-210ENST00000568784 ARID3AQ99856 593 aa18.04■□□□□ 0.48
VPS35-210ENST00000568784 CABP1Q9NZU7 370 aa18.04■□□□□ 0.48
VPS35-210ENST00000568784 GLIPR1L2Q4G1C9 344 aa18.03■□□□□ 0.48
VPS35-210ENST00000568784 MADDQ8WXG6 1647 aa18.03■□□□□ 0.48
VPS35-210ENST00000568784 RAPGEF3O95398 923 aa18.02■□□□□ 0.48
VPS35-210ENST00000568784 TRIM35Q9UPQ4 493 aa18.02■□□□□ 0.48
VPS35-210ENST00000568784 FANCAO15360 1455 aa18.02■□□□□ 0.48
VPS35-210ENST00000568784 KDM5AP29375 1690 aaKnown RBP18.02■□□□□ 0.48
VPS35-210ENST00000568784 FOXD4L6Q3SYB3 417 aaPredicted RBP18.02■□□□□ 0.48
VPS35-210ENST00000568784 FOXD4L3Q6VB84 417 aaPredicted RBP18.02■□□□□ 0.48
VPS35-210ENST00000568784 NUTM2FA1L443 756 aa18.01■□□□□ 0.47
VPS35-210ENST00000568784 ADGRL1O94910 1474 aa18.01■□□□□ 0.47
VPS35-210ENST00000568784 SSFA2P28290 1259 aa18.01■□□□□ 0.47
VPS35-210ENST00000568784 HSP90AA2PQ14568 343 aaPredicted RBP18.01■□□□□ 0.47
VPS35-210ENST00000568784 CCDC27Q2M243 656 aa18.01■□□□□ 0.47
VPS35-210ENST00000568784 HDAC1Q13547 482 aaPredicted RBP18.01■□□□□ 0.47
VPS35-210ENST00000568784 CLTCL1P53675 1640 aa18■□□□□ 0.47
VPS35-210ENST00000568784 MLECQ14165 292 aa18■□□□□ 0.47
VPS35-210ENST00000568784 DCTN1Q14203 1278 aa18■□□□□ 0.47
VPS35-210ENST00000568784 ESPNB1AK53 854 aa18■□□□□ 0.47
VPS35-210ENST00000568784 MCTP1Q6DN14 999 aa18■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms