RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 ASXL1Q8IXJ9 1541 aa21.91■■□□□ 1.1
VPS39-210ENST00000568357 AFF2P51816 1311 aa21.91■■□□□ 1.1
VPS39-210ENST00000568357 NUTM2BA6NNL0 878 aaPredicted RBP21.91■■□□□ 1.1
VPS39-210ENST00000568357 NUTM2EB1AL46 878 aaPredicted RBP21.91■■□□□ 1.1
VPS39-210ENST00000568357 WAPLQ7Z5K2 1190 aa21.91■■□□□ 1.1
VPS39-210ENST00000568357 NUTM2AQ8IVF1 878 aaPredicted RBP21.91■■□□□ 1.1
VPS39-210ENST00000568357 SRCAPQ6ZRS2 3230 aa21.9■■□□□ 1.1
VPS39-210ENST00000568357 BRINP3Q76B58 766 aa21.89■■□□□ 1.09
VPS39-210ENST00000568357 STAC3Q96MF2 364 aa21.89■■□□□ 1.09
VPS39-210ENST00000568357 TECPR2O15040 1411 aa21.89■■□□□ 1.09
VPS39-210ENST00000568357 MST1RQ04912 1400 aa21.89■■□□□ 1.09
VPS39-210ENST00000568357 YTHDC2Q9H6S0 1430 aaKnown RBP21.89■■□□□ 1.09
VPS39-210ENST00000568357 NHSL1Q5SYE7 1610 aa21.88■■□□□ 1.09
VPS39-210ENST00000568357 PLEKHH1Q9ULM0 1364 aa21.87■■□□□ 1.09
VPS39-210ENST00000568357 SIRT1Q96EB6 747 aa21.86■■□□□ 1.09
VPS39-210ENST00000568357 SIN3AQ96ST3 1273 aa21.85■■□□□ 1.09
VPS39-210ENST00000568357 NALCNQ8IZF0 1738 aa21.85■■□□□ 1.09
VPS39-210ENST00000568357 ORAI2Q96SN7 254 aa21.81■■□□□ 1.08
VPS39-210ENST00000568357 C1orf167Q5SNV9 1468 aa21.81■■□□□ 1.08
VPS39-210ENST00000568357 DDX17Q92841 729 aaKnown RBP21.8■■□□□ 1.08
VPS39-210ENST00000568357 NEUROD1Q13562 356 aa21.79■■□□□ 1.08
VPS39-210ENST00000568357 PRAM1Q96QH2 718 aa21.79■■□□□ 1.08
VPS39-210ENST00000568357 ADGRB1O14514 1584 aa21.78■■□□□ 1.08
VPS39-210ENST00000568357 RBM6P78332 1123 aaKnown RBP21.78■■□□□ 1.08
VPS39-210ENST00000568357 C8orf37Q96NL8 207 aa21.78■■□□□ 1.08
VPS39-210ENST00000568357 TRAK1Q9UPV9 953 aa21.78■■□□□ 1.08
VPS39-210ENST00000568357 LAMC1P11047 1609 aa21.77■■□□□ 1.08
VPS39-210ENST00000568357 SAFB2Q14151 953 aaKnown RBP eCLIP21.77■■□□□ 1.08
VPS39-210ENST00000568357 L3MBTL2Q969R5 705 aa21.77■■□□□ 1.08
VPS39-210ENST00000568357 QTRT2Q9H974 415 aaKnown RBP21.77■■□□□ 1.08
VPS39-210ENST00000568357 KNDC1Q76NI1 1749 aa21.75■■□□□ 1.07
VPS39-210ENST00000568357 NUTM2FA1L443 756 aa21.75■■□□□ 1.07
VPS39-210ENST00000568357 POGKQ9P215 609 aa21.75■■□□□ 1.07
VPS39-210ENST00000568357 ATAD2Q6PL18 1390 aa21.74■■□□□ 1.07
VPS39-210ENST00000568357 PNPLA6Q8IY17 1366 aa21.74■■□□□ 1.07
VPS39-210ENST00000568357 NBPF1Q3BBV0 1214 aa21.73■■□□□ 1.07
VPS39-210ENST00000568357 ESCO1Q5FWF5 840 aa21.73■■□□□ 1.07
VPS39-210ENST00000568357 CDC42BPGQ6DT37 1551 aa21.72■■□□□ 1.07
VPS39-210ENST00000568357 DLC1Q96QB1 1528 aa21.71■■□□□ 1.07
VPS39-210ENST00000568357 LRRC59Q96AG4 307 aaKnown RBP21.7■■□□□ 1.06
VPS39-210ENST00000568357 SOS2Q07890 1332 aaPredicted RBP21.67■■□□□ 1.06
VPS39-210ENST00000568357 HIRIP3Q9BW71 556 aaPredicted RBP21.67■■□□□ 1.06
VPS39-210ENST00000568357 ZRANB1Q9UGI0 708 aa21.67■■□□□ 1.06
VPS39-210ENST00000568357 MINK1Q8N4C8 1332 aaPredicted RBP21.66■■□□□ 1.06
VPS39-210ENST00000568357 FOXO3O43524 673 aa21.66■■□□□ 1.06
VPS39-210ENST00000568357 ADAMTS2O95450 1211 aa21.66■■□□□ 1.06
VPS39-210ENST00000568357 NGLY1Q96IV0 654 aa21.64■■□□□ 1.05
VPS39-210ENST00000568357 XPCQ01831 940 aaPredicted RBP21.63■■□□□ 1.05
VPS39-210ENST00000568357 EP400Q96L91 3159 aa21.62■■□□□ 1.05
VPS39-210ENST00000568357 NPHP3Q7Z494 1330 aa21.62■■□□□ 1.05
VPS39-210ENST00000568357 FMN2Q9NZ56 1722 aa21.61■■□□□ 1.05
VPS39-210ENST00000568357 WASLO00401 505 aaPredicted RBP21.61■■□□□ 1.05
VPS39-210ENST00000568357 PCGF6Q9BYE7 350 aa21.6■■□□□ 1.05
VPS39-210ENST00000568357 USP21Q9UK80 565 aa21.6■■□□□ 1.05
VPS39-210ENST00000568357 PHF8Q9UPP1 1060 aa21.6■■□□□ 1.05
VPS39-210ENST00000568357 ATRNO75882 1429 aa21.59■■□□□ 1.05
VPS39-210ENST00000568357 NBPF8Q3BBV2 869 aa21.59■■□□□ 1.05
VPS39-210ENST00000568357 KIAA1210Q9ULL0 1709 aa21.59■■□□□ 1.05
VPS39-210ENST00000568357 PRR36Q9H6K5 1346 aa21.57■■□□□ 1.04
VPS39-210ENST00000568357 TRPC5Q9UL62 973 aaPredicted RBP21.57■■□□□ 1.04
VPS39-210ENST00000568357 COL22A1Q8NFW1 1626 aaPredicted RBP21.57■■□□□ 1.04
VPS39-210ENST00000568357 PXDNQ92626 1479 aa21.57■■□□□ 1.04
VPS39-210ENST00000568357 KRT28Q7Z3Y7 464 aa21.56■■□□□ 1.04
VPS39-210ENST00000568357 PMFBP1Q8TBY8 1022 aa21.56■■□□□ 1.04
VPS39-210ENST00000568357 ADGRB2O60241 1585 aa21.56■■□□□ 1.04
VPS39-210ENST00000568357 MARF1Q9Y4F3 1742 aaKnown RBP21.55■■□□□ 1.04
VPS39-210ENST00000568357 ANKARQ7Z5J8 1434 aa21.55■■□□□ 1.04
VPS39-210ENST00000568357 CDK19Q9BWU1 502 aa21.54■■□□□ 1.04
VPS39-210ENST00000568357 ARHGEF28Q8N1W1 1705 aaKnown RBP21.54■■□□□ 1.04
VPS39-210ENST00000568357 TONSLQ96HA7 1378 aa21.53■■□□□ 1.04
VPS39-210ENST00000568357 LRP5O75197 1615 aa21.52■■□□□ 1.04
VPS39-210ENST00000568357 USP32Q8NFA0 1604 aa21.52■■□□□ 1.04
VPS39-210ENST00000568357 FNBP4Q8N3X1 1017 aaPredicted RBP21.52■■□□□ 1.04
VPS39-210ENST00000568357 CENPJQ9HC77 1338 aaPredicted RBP21.52■■□□□ 1.03
VPS39-210ENST00000568357 PSME1Q06323 249 aa21.51■■□□□ 1.03
VPS39-210ENST00000568357 NUDT16Q96DE0 195 aaKnown RBP21.51■■□□□ 1.03
VPS39-210ENST00000568357 SPATA31A3Q5VYP0 1347 aa21.51■■□□□ 1.03
VPS39-210ENST00000568357 ROCK2O75116 1388 aaKnown RBP21.5■■□□□ 1.03
VPS39-210ENST00000568357 EIF3AQ14152 1382 aaKnown RBP21.5■■□□□ 1.03
VPS39-210ENST00000568357 RGPD8O14715 1765 aaPredicted RBP21.5■■□□□ 1.03
VPS39-210ENST00000568357 TULP4Q9NRJ4 1543 aa21.5■■□□□ 1.03
VPS39-210ENST00000568357 TRPM1Q7Z4N2 1603 aa21.48■■□□□ 1.03
VPS39-210ENST00000568357 KIF1AQ12756 1690 aa21.48■■□□□ 1.03
VPS39-210ENST00000568357 BCL9LQ86UU0 1499 aa21.48■■□□□ 1.03
VPS39-210ENST00000568357 CCDC125Q86Z20 511 aa21.48■■□□□ 1.03
VPS39-210ENST00000568357 BRWD3Q6RI45 1802 aa21.47■■□□□ 1.03
VPS39-210ENST00000568357 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.46■■□□□ 1.03
VPS39-210ENST00000568357 GLI3P10071 1580 aa21.45■■□□□ 1.02
VPS39-210ENST00000568357 NGDNQ8NEJ9 315 aaKnown RBP21.45■■□□□ 1.02
VPS39-210ENST00000568357 GPRASP1Q5JY77 1395 aa21.45■■□□□ 1.02
VPS39-210ENST00000568357 CABP2Q9NPB3 220 aa21.44■■□□□ 1.02
VPS39-210ENST00000568357 CCDC61Q9Y6R9 512 aa21.44■■□□□ 1.02
VPS39-210ENST00000568357 SBNO1A3KN83 1393 aa21.44■■□□□ 1.02
VPS39-210ENST00000568357 BLMP54132 1417 aaPredicted RBP21.44■■□□□ 1.02
VPS39-210ENST00000568357 ATP7BP35670 1465 aa21.44■■□□□ 1.02
VPS39-210ENST00000568357 SRPK2P78362 688 aaKnown RBP21.43■■□□□ 1.02
VPS39-210ENST00000568357 CARD11Q9BXL7 1154 aa21.43■■□□□ 1.02
VPS39-210ENST00000568357 LMOD2Q6P5Q4 547 aa21.42■■□□□ 1.02
VPS39-210ENST00000568357 TNS3Q68CZ2 1445 aa21.41■■□□□ 1.02
VPS39-210ENST00000568357 DEFB132Q7Z7B7 95 aa21.41■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms