RNA–Protein interactions for RNA: ENST00000567635.5

SF3B3-209, Transcript of splicing factor 3b subunit 3, human

TSL 5

Gene SF3B3, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF3B3-209	ENST00000567635	DDX17	Q92841	729 aa	Known RBP	10.1	□□□□□ -0.79
SF3B3-209	ENST00000567635	ORAI2	Q96SN7	254 aa		10.1	□□□□□ -0.79
SF3B3-209	ENST00000567635	MYOM2	P54296	1465 aa		10.1	□□□□□ -0.79
SF3B3-209	ENST00000567635	NRXN1	Q9ULB1	1477 aa		10.1	□□□□□ -0.79
SF3B3-209	ENST00000567635	SHPRH	Q149N8	1683 aa		10.09	□□□□□ -0.79
SF3B3-209	ENST00000567635	TECPR2	O15040	1411 aa		10.09	□□□□□ -0.79
SF3B3-209	ENST00000567635	YTHDC2	Q9H6S0	1430 aa	Known RBP	10.09	□□□□□ -0.79
SF3B3-209	ENST00000567635	LAMC1	P11047	1609 aa		10.09	□□□□□ -0.79
SF3B3-209	ENST00000567635	NHSL1	Q5SYE7	1610 aa		10.09	□□□□□ -0.79
SF3B3-209	ENST00000567635	KNDC1	Q76NI1	1749 aa		10.09	□□□□□ -0.79
SF3B3-209	ENST00000567635	ESCO1	Q5FWF5	840 aa		10.08	□□□□□ -0.8
SF3B3-209	ENST00000567635	MEX3C	Q5U5Q3	659 aa	Known RBP	10.08	□□□□□ -0.8
SF3B3-209	ENST00000567635	RGPD8	O14715	1765 aa	Predicted RBP	10.07	□□□□□ -0.8
SF3B3-209	ENST00000567635	NUTM2B	A6NNL0	878 aa	Predicted RBP	10.07	□□□□□ -0.8
SF3B3-209	ENST00000567635	NUTM2E	B1AL46	878 aa	Predicted RBP	10.07	□□□□□ -0.8
SF3B3-209	ENST00000567635	POTEA	Q6S8J7	498 aa		10.07	□□□□□ -0.8
SF3B3-209	ENST00000567635	NUTM2A	Q8IVF1	878 aa	Predicted RBP	10.07	□□□□□ -0.8
SF3B3-209	ENST00000567635	PLEKHH1	Q9ULM0	1364 aa		10.06	□□□□□ -0.8
SF3B3-209	ENST00000567635	NUTM2F	A1L443	756 aa		10.06	□□□□□ -0.8
SF3B3-209	ENST00000567635	POGK	Q9P215	609 aa		10.06	□□□□□ -0.8
SF3B3-209	ENST00000567635	SOS2	Q07890	1332 aa	Predicted RBP	10.06	□□□□□ -0.8
SF3B3-209	ENST00000567635	CDC42BPG	Q6DT37	1551 aa		10.05	□□□□□ -0.8
SF3B3-209	ENST00000567635	SAFB2	Q14151	953 aa	Known RBP eCLIP	10.05	□□□□□ -0.8
SF3B3-209	ENST00000567635	PRAM1	Q96QH2	718 aa		10.05	□□□□□ -0.8
SF3B3-209	ENST00000567635	FOXO3	O43524	673 aa		10.04	□□□□□ -0.8
SF3B3-209	ENST00000567635	ZNF772	Q68DY9	489 aa	Predicted RBP	10.04	□□□□□ -0.8
SF3B3-209	ENST00000567635	PPP4R3CP	Q6ZMV5	832 aa		10.04	□□□□□ -0.8
SF3B3-209	ENST00000567635	TRAK1	Q9UPV9	953 aa		10.04	□□□□□ -0.8
SF3B3-209	ENST00000567635	FMN2	Q9NZ56	1722 aa		10.04	□□□□□ -0.8
SF3B3-209	ENST00000567635	NPHP3	Q7Z494	1330 aa		10.04	□□□□□ -0.8
SF3B3-209	ENST00000567635	LRP6	O75581	1613 aa		10.04	□□□□□ -0.8
SF3B3-209	ENST00000567635	PNPLA6	Q8IY17	1366 aa		10.03	□□□□□ -0.8
SF3B3-209	ENST00000567635	DLC1	Q96QB1	1528 aa		10.02	□□□□□ -0.8
SF3B3-209	ENST00000567635	ADGRB1	O14514	1584 aa		10.01	□□□□□ -0.81
SF3B3-209	ENST00000567635	XPC	Q01831	940 aa	Predicted RBP	10.01	□□□□□ -0.81
SF3B3-209	ENST00000567635	ADAMTS2	O95450	1211 aa		10	□□□□□ -0.81
SF3B3-209	ENST00000567635	KRT28	Q7Z3Y7	464 aa		10	□□□□□ -0.81
SF3B3-209	ENST00000567635	NGLY1	Q96IV0	654 aa		10	□□□□□ -0.81
SF3B3-209	ENST00000567635	PHF8	Q9UPP1	1060 aa		10	□□□□□ -0.81
SF3B3-209	ENST00000567635	AFF2	P51816	1311 aa		10	□□□□□ -0.81
SF3B3-209	ENST00000567635	MINK1	Q8N4C8	1332 aa	Predicted RBP	10	□□□□□ -0.81
SF3B3-209	ENST00000567635	KIF1A	Q12756	1690 aa		9.99	□□□□□ -0.81
SF3B3-209	ENST00000567635	KIAA1210	Q9ULL0	1709 aa		9.99	□□□□□ -0.81
SF3B3-209	ENST00000567635	PXDN	Q92626	1479 aa		9.99	□□□□□ -0.81
SF3B3-209	ENST00000567635	RXRB	P28702	533 aa		9.99	□□□□□ -0.81
SF3B3-209	ENST00000567635	PSME1	Q06323	249 aa		9.99	□□□□□ -0.81
SF3B3-209	ENST00000567635	C8orf37	Q96NL8	207 aa		9.99	□□□□□ -0.81
SF3B3-209	ENST00000567635	SIN3A	Q96ST3	1273 aa		9.99	□□□□□ -0.81
SF3B3-209	ENST00000567635	HIRIP3	Q9BW71	556 aa	Predicted RBP	9.99	□□□□□ -0.81
SF3B3-209	ENST00000567635	WASL	O00401	505 aa	Predicted RBP	9.98	□□□□□ -0.81
SF3B3-209	ENST00000567635	NEUROD1	Q13562	356 aa		9.98	□□□□□ -0.81
SF3B3-209	ENST00000567635	L3MBTL2	Q969R5	705 aa		9.98	□□□□□ -0.81
SF3B3-209	ENST00000567635	QTRT2	Q9H974	415 aa	Known RBP	9.98	□□□□□ -0.81
SF3B3-209	ENST00000567635	COL22A1	Q8NFW1	1626 aa	Predicted RBP	9.97	□□□□□ -0.81
SF3B3-209	ENST00000567635	ARHGEF28	Q8N1W1	1705 aa	Known RBP	9.97	□□□□□ -0.81
SF3B3-209	ENST00000567635	TRIM26	Q12899	539 aa	Predicted RBP	9.97	□□□□□ -0.81
SF3B3-209	ENST00000567635	NBPF1	Q3BBV0	1214 aa		9.97	□□□□□ -0.81
SF3B3-209	ENST00000567635	SPATA31A3	Q5VYP0	1347 aa		9.97	□□□□□ -0.81
SF3B3-209	ENST00000567635	MARF1	Q9Y4F3	1742 aa	Known RBP	9.96	□□□□□ -0.81
SF3B3-209	ENST00000567635	PMFBP1	Q8TBY8	1022 aa		9.96	□□□□□ -0.82
SF3B3-209	ENST00000567635	EIF3A	Q14152	1382 aa	Known RBP	9.96	□□□□□ -0.82
SF3B3-209	ENST00000567635	ANKAR	Q7Z5J8	1434 aa		9.96	□□□□□ -0.82
SF3B3-209	ENST00000567635	ADGRB2	O60241	1585 aa		9.96	□□□□□ -0.82
SF3B3-209	ENST00000567635	USP32	Q8NFA0	1604 aa		9.96	□□□□□ -0.82
SF3B3-209	ENST00000567635	FNBP4	Q8N3X1	1017 aa	Predicted RBP	9.95	□□□□□ -0.82
SF3B3-209	ENST00000567635	USP21	Q9UK80	565 aa		9.95	□□□□□ -0.82
SF3B3-209	ENST00000567635	SBNO1	A3KN83	1393 aa		9.94	□□□□□ -0.82
SF3B3-209	ENST00000567635	PRR36	Q9H6K5	1346 aa		9.94	□□□□□ -0.82
SF3B3-209	ENST00000567635	RBM6	P78332	1123 aa	Known RBP	9.94	□□□□□ -0.82
SF3B3-209	ENST00000567635	LMOD2	Q6P5Q4	547 aa		9.94	□□□□□ -0.82
SF3B3-209	ENST00000567635	NUDT16	Q96DE0	195 aa	Known RBP	9.94	□□□□□ -0.82
SF3B3-209	ENST00000567635	CDK19	Q9BWU1	502 aa		9.94	□□□□□ -0.82
SF3B3-209	ENST00000567635	GPRASP1	Q5JY77	1395 aa		9.93	□□□□□ -0.82
SF3B3-209	ENST00000567635	NGDN	Q8NEJ9	315 aa	Known RBP	9.93	□□□□□ -0.82
SF3B3-209	ENST00000567635	TRPC5	Q9UL62	973 aa	Predicted RBP	9.93	□□□□□ -0.82
SF3B3-209	ENST00000567635	TULP4	Q9NRJ4	1543 aa		9.92	□□□□□ -0.82
SF3B3-209	ENST00000567635	HAP1	P54257	671 aa	Predicted RBP	9.92	□□□□□ -0.82
SF3B3-209	ENST00000567635	CABLES1	Q8TDN4	633 aa		9.92	□□□□□ -0.82
SF3B3-209	ENST00000567635	ITSN1	Q15811	1721 aa		9.92	□□□□□ -0.82
SF3B3-209	ENST00000567635	CDK12	Q9NYV4	1490 aa	Predicted RBP	9.91	□□□□□ -0.82
SF3B3-209	ENST00000567635	TNS3	Q68CZ2	1445 aa		9.91	□□□□□ -0.82
SF3B3-209	ENST00000567635	ARHGEF10	O15013	1369 aa		9.91	□□□□□ -0.82
SF3B3-209	ENST00000567635	CENPJ	Q9HC77	1338 aa	Predicted RBP	9.91	□□□□□ -0.82
SF3B3-209	ENST00000567635	PLEKHG5	O94827	1062 aa		9.91	□□□□□ -0.82
SF3B3-209	ENST00000567635	CCDC61	Q9Y6R9	512 aa		9.91	□□□□□ -0.82
SF3B3-209	ENST00000567635	PAK3	O75914	559 aa	Predicted RBP	9.9	□□□□□ -0.82
SF3B3-209	ENST00000567635	TRPM3	Q9HCF6	1732 aa	Predicted RBP	9.9	□□□□□ -0.83
SF3B3-209	ENST00000567635	PLEKHG3	A1L390	1219 aa		9.89	□□□□□ -0.83
SF3B3-209	ENST00000567635	SRPK2	P78362	688 aa	Known RBP	9.89	□□□□□ -0.83
SF3B3-209	ENST00000567635	NBPF8	Q3BBV2	869 aa		9.89	□□□□□ -0.83
SF3B3-209	ENST00000567635	UNC5CL	Q8IV45	518 aa		9.89	□□□□□ -0.83
SF3B3-209	ENST00000567635	BCL9L	Q86UU0	1499 aa		9.89	□□□□□ -0.83
SF3B3-209	ENST00000567635	TRPM1	Q7Z4N2	1603 aa		9.89	□□□□□ -0.83
SF3B3-209	ENST00000567635	ALS2	Q96Q42	1657 aa		9.88	□□□□□ -0.83
SF3B3-209	ENST00000567635	QRICH2	Q9H0J4	1663 aa		9.88	□□□□□ -0.83
SF3B3-209	ENST00000567635	FAM83G	A6ND36	823 aa		9.88	□□□□□ -0.83
SF3B3-209	ENST00000567635	MAPK8IP2	Q13387	824 aa	Predicted RBP	9.88	□□□□□ -0.83
SF3B3-209	ENST00000567635	GJD4	Q96KN9	370 aa	Predicted RBP	9.88	□□□□□ -0.83
SF3B3-209	ENST00000567635	ATRN	O75882	1429 aa		9.88	□□□□□ -0.83
SF3B3-209	ENST00000567635	ROCK2	O75116	1388 aa	Known RBP	9.88	□□□□□ -0.83

Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms