RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 SIRT1Q96EB6 747 aa21.93■■□□□ 1.1
CLN3-213ENST00000565047 ORAI2Q96SN7 254 aa21.93■■□□□ 1.1
CLN3-213ENST00000565047 PLEKHH1Q9ULM0 1364 aa21.93■■□□□ 1.1
CLN3-213ENST00000565047 CDC42BPGQ6DT37 1551 aa21.92■■□□□ 1.1
CLN3-213ENST00000565047 POTEAQ6S8J7 498 aa21.92■■□□□ 1.1
CLN3-213ENST00000565047 STK26Q9P289 416 aa21.92■■□□□ 1.1
CLN3-213ENST00000565047 DHX57Q6P158 1386 aaKnown RBP21.88■■□□□ 1.09
CLN3-213ENST00000565047 SOS2Q07890 1332 aaPredicted RBP21.88■■□□□ 1.09
CLN3-213ENST00000565047 LRRC59Q96AG4 307 aaKnown RBP21.88■■□□□ 1.09
CLN3-213ENST00000565047 ADGRB1O14514 1584 aa21.87■■□□□ 1.09
CLN3-213ENST00000565047 PNPLA6Q8IY17 1366 aa21.85■■□□□ 1.09
CLN3-213ENST00000565047 DCAF11Q8TEB1 546 aa21.83■■□□□ 1.09
CLN3-213ENST00000565047 STAC3Q96MF2 364 aa21.83■■□□□ 1.09
CLN3-213ENST00000565047 DLC1Q96QB1 1528 aa21.81■■□□□ 1.08
CLN3-213ENST00000565047 ESCO1Q5FWF5 840 aa21.8■■□□□ 1.08
CLN3-213ENST00000565047 KDM2AQ9Y2K7 1162 aa21.8■■□□□ 1.08
CLN3-213ENST00000565047 PXDNQ92626 1479 aa21.79■■□□□ 1.08
CLN3-213ENST00000565047 FMN2Q9NZ56 1722 aa21.79■■□□□ 1.08
CLN3-213ENST00000565047 PRAM1Q96QH2 718 aa21.78■■□□□ 1.08
CLN3-213ENST00000565047 NUTM2BA6NNL0 878 aaPredicted RBP21.77■■□□□ 1.08
CLN3-213ENST00000565047 NUTM2EB1AL46 878 aaPredicted RBP21.77■■□□□ 1.08
CLN3-213ENST00000565047 NUTM2AQ8IVF1 878 aaPredicted RBP21.77■■□□□ 1.08
CLN3-213ENST00000565047 NUTM2FA1L443 756 aa21.76■■□□□ 1.07
CLN3-213ENST00000565047 FOXO3O43524 673 aa21.75■■□□□ 1.07
CLN3-213ENST00000565047 MEX3CQ5U5Q3 659 aaKnown RBP21.75■■□□□ 1.07
CLN3-213ENST00000565047 NPHP3Q7Z494 1330 aa21.75■■□□□ 1.07
CLN3-213ENST00000565047 ZNF772Q68DY9 489 aaPredicted RBP21.74■■□□□ 1.07
CLN3-213ENST00000565047 COL22A1Q8NFW1 1626 aaPredicted RBP21.73■■□□□ 1.07
CLN3-213ENST00000565047 TRAK1Q9UPV9 953 aa21.72■■□□□ 1.07
CLN3-213ENST00000565047 ADGRB2O60241 1585 aa21.72■■□□□ 1.07
CLN3-213ENST00000565047 SAFB2Q14151 953 aaKnown RBP eCLIP21.71■■□□□ 1.07
CLN3-213ENST00000565047 AFF2P51816 1311 aa21.7■■□□□ 1.06
CLN3-213ENST00000565047 USP32Q8NFA0 1604 aa21.69■■□□□ 1.06
CLN3-213ENST00000565047 XPCQ01831 940 aaPredicted RBP21.69■■□□□ 1.06
CLN3-213ENST00000565047 KIF1AQ12756 1690 aa21.69■■□□□ 1.06
CLN3-213ENST00000565047 RGPD8O14715 1765 aaPredicted RBP21.69■■□□□ 1.06
CLN3-213ENST00000565047 POGKQ9P215 609 aa21.68■■□□□ 1.06
CLN3-213ENST00000565047 ANKARQ7Z5J8 1434 aa21.66■■□□□ 1.06
CLN3-213ENST00000565047 SPATA31A3Q5VYP0 1347 aa21.66■■□□□ 1.06
CLN3-213ENST00000565047 C8orf37Q96NL8 207 aa21.66■■□□□ 1.06
CLN3-213ENST00000565047 PHF8Q9UPP1 1060 aa21.66■■□□□ 1.06
CLN3-213ENST00000565047 ARHGEF28Q8N1W1 1705 aaKnown RBP21.64■■□□□ 1.06
CLN3-213ENST00000565047 KIAA1210Q9ULL0 1709 aa21.64■■□□□ 1.06
CLN3-213ENST00000565047 PRR36Q9H6K5 1346 aa21.64■■□□□ 1.05
CLN3-213ENST00000565047 ADAMTS2O95450 1211 aa21.64■■□□□ 1.05
CLN3-213ENST00000565047 KRT28Q7Z3Y7 464 aa21.64■■□□□ 1.05
CLN3-213ENST00000565047 FNBP4Q8N3X1 1017 aaPredicted RBP21.64■■□□□ 1.05
CLN3-213ENST00000565047 HIRIP3Q9BW71 556 aaPredicted RBP21.64■■□□□ 1.05
CLN3-213ENST00000565047 MINK1Q8N4C8 1332 aaPredicted RBP21.62■■□□□ 1.05
CLN3-213ENST00000565047 WASLO00401 505 aaPredicted RBP21.62■■□□□ 1.05
CLN3-213ENST00000565047 RXRBP28702 533 aa21.62■■□□□ 1.05
CLN3-213ENST00000565047 NBPF1Q3BBV0 1214 aa21.62■■□□□ 1.05
CLN3-213ENST00000565047 CDK12Q9NYV4 1490 aaPredicted RBP21.61■■□□□ 1.05
CLN3-213ENST00000565047 L3MBTL2Q969R5 705 aa21.6■■□□□ 1.05
CLN3-213ENST00000565047 NGLY1Q96IV0 654 aa21.6■■□□□ 1.05
CLN3-213ENST00000565047 SIN3AQ96ST3 1273 aa21.6■■□□□ 1.05
CLN3-213ENST00000565047 QTRT2Q9H974 415 aaKnown RBP21.6■■□□□ 1.05
CLN3-213ENST00000565047 TULP4Q9NRJ4 1543 aa21.6■■□□□ 1.05
CLN3-213ENST00000565047 SBNO1A3KN83 1393 aa21.59■■□□□ 1.05
CLN3-213ENST00000565047 PMFBP1Q8TBY8 1022 aa21.57■■□□□ 1.04
CLN3-213ENST00000565047 BCL9LQ86UU0 1499 aa21.57■■□□□ 1.04
CLN3-213ENST00000565047 TNS3Q68CZ2 1445 aa21.56■■□□□ 1.04
CLN3-213ENST00000565047 PSME1Q06323 249 aa21.56■■□□□ 1.04
CLN3-213ENST00000565047 MARF1Q9Y4F3 1742 aaKnown RBP21.55■■□□□ 1.04
CLN3-213ENST00000565047 RBM6P78332 1123 aaKnown RBP21.55■■□□□ 1.04
CLN3-213ENST00000565047 EIF3AQ14152 1382 aaKnown RBP21.55■■□□□ 1.04
CLN3-213ENST00000565047 ATP7BP35670 1465 aa21.54■■□□□ 1.04
CLN3-213ENST00000565047 USP21Q9UK80 565 aa21.54■■□□□ 1.04
CLN3-213ENST00000565047 ATRNO75882 1429 aa21.54■■□□□ 1.04
CLN3-213ENST00000565047 TRPM3Q9HCF6 1732 aaPredicted RBP21.53■■□□□ 1.04
CLN3-213ENST00000565047 RGS12O14924 1447 aa21.53■■□□□ 1.04
CLN3-213ENST00000565047 SLIT2O94813 1529 aa21.51■■□□□ 1.03
CLN3-213ENST00000565047 NUDT16Q96DE0 195 aaKnown RBP21.51■■□□□ 1.03
CLN3-213ENST00000565047 TRPC5Q9UL62 973 aaPredicted RBP21.51■■□□□ 1.03
CLN3-213ENST00000565047 CDK19Q9BWU1 502 aa21.5■■□□□ 1.03
CLN3-213ENST00000565047 ARHGEF10O15013 1369 aa21.49■■□□□ 1.03
CLN3-213ENST00000565047 CABLES1Q8TDN4 633 aa21.49■■□□□ 1.03
CLN3-213ENST00000565047 ALS2Q96Q42 1657 aa21.49■■□□□ 1.03
CLN3-213ENST00000565047 NEUROD1Q13562 356 aa21.48■■□□□ 1.03
CLN3-213ENST00000565047 UPF1Q92900 1129 aaKnown RBP eCLIP21.48■■□□□ 1.03
CLN3-213ENST00000565047 ABCA3Q99758 1704 aa21.47■■□□□ 1.03
CLN3-213ENST00000565047 TRPM1Q7Z4N2 1603 aa21.47■■□□□ 1.03
CLN3-213ENST00000565047 TOPAZ1Q8N9V7 1692 aa21.46■■□□□ 1.03
CLN3-213ENST00000565047 GPRASP1Q5JY77 1395 aa21.46■■□□□ 1.03
CLN3-213ENST00000565047 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.45■■□□□ 1.02
CLN3-213ENST00000565047 POLR3AO14802 1390 aaPredicted RBP21.45■■□□□ 1.02
CLN3-213ENST00000565047 PLEKHG3A1L390 1219 aa21.44■■□□□ 1.02
CLN3-213ENST00000565047 TRIM26Q12899 539 aaPredicted RBP21.44■■□□□ 1.02
CLN3-213ENST00000565047 NBPF8Q3BBV2 869 aa21.44■■□□□ 1.02
CLN3-213ENST00000565047 UNC5CLQ8IV45 518 aa21.44■■□□□ 1.02
CLN3-213ENST00000565047 CCDC61Q9Y6R9 512 aa21.44■■□□□ 1.02
CLN3-213ENST00000565047 CENPJQ9HC77 1338 aaPredicted RBP21.44■■□□□ 1.02
CLN3-213ENST00000565047 ITSN1Q15811 1721 aa21.43■■□□□ 1.02
CLN3-213ENST00000565047 NGDNQ8NEJ9 315 aaKnown RBP21.43■■□□□ 1.02
CLN3-213ENST00000565047 FAM83GA6ND36 823 aa21.42■■□□□ 1.02
CLN3-213ENST00000565047 GJD4Q96KN9 370 aaPredicted RBP21.42■■□□□ 1.02
CLN3-213ENST00000565047 CRYBG1Q9Y4K1 1723 aa21.41■■□□□ 1.02
CLN3-213ENST00000565047 LMOD2Q6P5Q4 547 aa21.41■■□□□ 1.02
CLN3-213ENST00000565047 ACEP12821 1306 aa21.4■■□□□ 1.02
CLN3-213ENST00000565047 GLI3P10071 1580 aa21.4■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms