RNA–Protein interactions for RNA: ENST00000564642.1

SYNGR3-204, Transcript of synaptogyrin 3, humanhuman

TSL 2

Gene SYNGR3, Length 752 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGR3-204ENST00000564642 COL16A1Q07092 1604 aaPredicted RBP26.61■■□□□ 1.85
SYNGR3-204ENST00000564642 JCADQ9P266 1359 aa26.6■■□□□ 1.85
SYNGR3-204ENST00000564642 PLEKHH1Q9ULM0 1364 aa26.59■■□□□ 1.85
SYNGR3-204ENST00000564642 CDC42BPGQ6DT37 1551 aa26.57■■□□□ 1.84
SYNGR3-204ENST00000564642 NHSL1Q5SYE7 1610 aa26.56■■□□□ 1.84
SYNGR3-204ENST00000564642 PRAM1Q96QH2 718 aa26.55■■□□□ 1.84
SYNGR3-204ENST00000564642 ORAI2Q96SN7 254 aa26.55■■□□□ 1.84
SYNGR3-204ENST00000564642 POGKQ9P215 609 aa26.55■■□□□ 1.84
SYNGR3-204ENST00000564642 TRAK1Q9UPV9 953 aa26.55■■□□□ 1.84
SYNGR3-204ENST00000564642 ADGRB1O14514 1584 aa26.54■■□□□ 1.84
SYNGR3-204ENST00000564642 SAFB2Q14151 953 aaKnown RBP eCLIP26.53■■□□□ 1.84
SYNGR3-204ENST00000564642 SIN3AQ96ST3 1273 aa26.53■■□□□ 1.84
SYNGR3-204ENST00000564642 NEUROD1Q13562 356 aa26.52■■□□□ 1.84
SYNGR3-204ENST00000564642 ESCO1Q5FWF5 840 aa26.52■■□□□ 1.84
SYNGR3-204ENST00000564642 DDX17Q92841 729 aaKnown RBP26.52■■□□□ 1.84
SYNGR3-204ENST00000564642 DLC1Q96QB1 1528 aa26.52■■□□□ 1.84
SYNGR3-204ENST00000564642 NUTM2FA1L443 756 aa26.51■■□□□ 1.83
SYNGR3-204ENST00000564642 LRRC59Q96AG4 307 aaKnown RBP26.51■■□□□ 1.83
SYNGR3-204ENST00000564642 SPATA31A6Q5VVP1 1343 aa26.49■■□□□ 1.83
SYNGR3-204ENST00000564642 SHPRHQ149N8 1683 aa26.49■■□□□ 1.83
SYNGR3-204ENST00000564642 FMN2Q9NZ56 1722 aa26.47■■□□□ 1.83
SYNGR3-204ENST00000564642 KIAA1210Q9ULL0 1709 aa26.46■■□□□ 1.83
SYNGR3-204ENST00000564642 L3MBTL2Q969R5 705 aa26.46■■□□□ 1.83
SYNGR3-204ENST00000564642 NPHP3Q7Z494 1330 aa26.42■■□□□ 1.82
SYNGR3-204ENST00000564642 MEX3CQ5U5Q3 659 aaKnown RBP26.42■■□□□ 1.82
SYNGR3-204ENST00000564642 SOS2Q07890 1332 aaPredicted RBP26.41■■□□□ 1.82
SYNGR3-204ENST00000564642 NUTM2BA6NNL0 878 aaPredicted RBP26.41■■□□□ 1.82
SYNGR3-204ENST00000564642 NUTM2EB1AL46 878 aaPredicted RBP26.41■■□□□ 1.82
SYNGR3-204ENST00000564642 POTEAQ6S8J7 498 aa26.41■■□□□ 1.82
SYNGR3-204ENST00000564642 NUTM2AQ8IVF1 878 aaPredicted RBP26.41■■□□□ 1.82
SYNGR3-204ENST00000564642 RGPD8O14715 1765 aaPredicted RBP26.41■■□□□ 1.82
SYNGR3-204ENST00000564642 MINK1Q8N4C8 1332 aaPredicted RBP26.4■■□□□ 1.82
SYNGR3-204ENST00000564642 FOXO3O43524 673 aa26.4■■□□□ 1.82
SYNGR3-204ENST00000564642 HIRIP3Q9BW71 556 aaPredicted RBP26.4■■□□□ 1.82
SYNGR3-204ENST00000564642 ARHGEF28Q8N1W1 1705 aaKnown RBP26.39■■□□□ 1.82
SYNGR3-204ENST00000564642 NBPF1Q3BBV0 1214 aa26.39■■□□□ 1.82
SYNGR3-204ENST00000564642 LRP6O75581 1613 aa26.37■■□□□ 1.81
SYNGR3-204ENST00000564642 ADGRB2O60241 1585 aa26.37■■□□□ 1.81
SYNGR3-204ENST00000564642 PNPLA6Q8IY17 1366 aa26.36■■□□□ 1.81
SYNGR3-204ENST00000564642 KIF1AQ12756 1690 aa26.36■■□□□ 1.81
SYNGR3-204ENST00000564642 PHF8Q9UPP1 1060 aa26.35■■□□□ 1.81
SYNGR3-204ENST00000564642 XPCQ01831 940 aaPredicted RBP26.34■■□□□ 1.81
SYNGR3-204ENST00000564642 WASLO00401 505 aaPredicted RBP26.33■■□□□ 1.81
SYNGR3-204ENST00000564642 EIF3AQ14152 1382 aaKnown RBP26.33■■□□□ 1.8
SYNGR3-204ENST00000564642 ANKARQ7Z5J8 1434 aa26.31■■□□□ 1.8
SYNGR3-204ENST00000564642 PXDNQ92626 1479 aa26.31■■□□□ 1.8
SYNGR3-204ENST00000564642 KRT28Q7Z3Y7 464 aa26.29■■□□□ 1.8
SYNGR3-204ENST00000564642 USP32Q8NFA0 1604 aa26.28■■□□□ 1.8
SYNGR3-204ENST00000564642 PSME1Q06323 249 aa26.28■■□□□ 1.8
SYNGR3-204ENST00000564642 TONSLQ96HA7 1378 aa26.28■■□□□ 1.8
SYNGR3-204ENST00000564642 TRPM1Q7Z4N2 1603 aa26.28■■□□□ 1.8
SYNGR3-204ENST00000564642 PMFBP1Q8TBY8 1022 aa26.27■■□□□ 1.8
SYNGR3-204ENST00000564642 TULP4Q9NRJ4 1543 aa26.27■■□□□ 1.8
SYNGR3-204ENST00000564642 ZNF772Q68DY9 489 aaPredicted RBP26.26■■□□□ 1.79
SYNGR3-204ENST00000564642 ROCK2O75116 1388 aaKnown RBP26.24■■□□□ 1.79
SYNGR3-204ENST00000564642 COL22A1Q8NFW1 1626 aaPredicted RBP26.24■■□□□ 1.79
SYNGR3-204ENST00000564642 PRR36Q9H6K5 1346 aa26.23■■□□□ 1.79
SYNGR3-204ENST00000564642 CENPJQ9HC77 1338 aaPredicted RBP26.23■■□□□ 1.79
SYNGR3-204ENST00000564642 ADAMTS2O95450 1211 aa26.23■■□□□ 1.79
SYNGR3-204ENST00000564642 C8orf37Q96NL8 207 aa26.23■■□□□ 1.79
SYNGR3-204ENST00000564642 CDK19Q9BWU1 502 aa26.23■■□□□ 1.79
SYNGR3-204ENST00000564642 SPATA31A3Q5VYP0 1347 aa26.22■■□□□ 1.79
SYNGR3-204ENST00000564642 PCGF6Q9BYE7 350 aa26.22■■□□□ 1.79
SYNGR3-204ENST00000564642 NBPF8Q3BBV2 869 aa26.21■■□□□ 1.79
SYNGR3-204ENST00000564642 NUDT16Q96DE0 195 aaKnown RBP26.21■■□□□ 1.79
SYNGR3-204ENST00000564642 AFF2P51816 1311 aa26.2■■□□□ 1.79
SYNGR3-204ENST00000564642 ITSN1Q15811 1721 aa26.19■■□□□ 1.78
SYNGR3-204ENST00000564642 NGDNQ8NEJ9 315 aaKnown RBP26.19■■□□□ 1.78
SYNGR3-204ENST00000564642 NGLY1Q96IV0 654 aa26.19■■□□□ 1.78
SYNGR3-204ENST00000564642 QRICH2Q9H0J4 1663 aa26.18■■□□□ 1.78
SYNGR3-204ENST00000564642 GPRASP1Q5JY77 1395 aa26.18■■□□□ 1.78
SYNGR3-204ENST00000564642 LMOD2Q6P5Q4 547 aa26.17■■□□□ 1.78
SYNGR3-204ENST00000564642 SBNO1A3KN83 1393 aa26.17■■□□□ 1.78
SYNGR3-204ENST00000564642 TNS3Q68CZ2 1445 aa26.16■■□□□ 1.78
SYNGR3-204ENST00000564642 SRPK2P78362 688 aaKnown RBP26.15■■□□□ 1.78
SYNGR3-204ENST00000564642 ATP7BP35670 1465 aa26.15■■□□□ 1.78
SYNGR3-204ENST00000564642 CCDC61Q9Y6R9 512 aa26.14■■□□□ 1.78
SYNGR3-204ENST00000564642 ARHGEF10O15013 1369 aa26.12■■□□□ 1.77
SYNGR3-204ENST00000564642 HAP1P54257 671 aaPredicted RBP26.12■■□□□ 1.77
SYNGR3-204ENST00000564642 UPF1Q92900 1129 aaKnown RBP eCLIP26.12■■□□□ 1.77
SYNGR3-204ENST00000564642 MARF1Q9Y4F3 1742 aaKnown RBP26.11■■□□□ 1.77
SYNGR3-204ENST00000564642 CARD11Q9BXL7 1154 aa26.11■■□□□ 1.77
SYNGR3-204ENST00000564642 PLEKHG5O94827 1062 aa26.1■■□□□ 1.77
SYNGR3-204ENST00000564642 RXRBP28702 533 aa26.1■■□□□ 1.77
SYNGR3-204ENST00000564642 TRPM3Q9HCF6 1732 aaPredicted RBP26.09■■□□□ 1.77
SYNGR3-204ENST00000564642 PAK3O75914 559 aaPredicted RBP26.09■■□□□ 1.77
SYNGR3-204ENST00000564642 QTRT2Q9H974 415 aaKnown RBP26.09■■□□□ 1.77
SYNGR3-204ENST00000564642 CABP2Q9NPB3 220 aa26.09■■□□□ 1.77
SYNGR3-204ENST00000564642 USP21Q9UK80 565 aa26.08■■□□□ 1.77
SYNGR3-204ENST00000564642 TOPAZ1Q8N9V7 1692 aa26.08■■□□□ 1.77
SYNGR3-204ENST00000564642 EVC2Q86UK5 1308 aa26.08■■□□□ 1.77
SYNGR3-204ENST00000564642 CABLES1Q8TDN4 633 aa26.07■■□□□ 1.76
SYNGR3-204ENST00000564642 RALGAPBQ86X10 1494 aa26.06■■□□□ 1.76
SYNGR3-204ENST00000564642 PLEKHG3A1L390 1219 aa26.06■■□□□ 1.76
SYNGR3-204ENST00000564642 FNBP4Q8N3X1 1017 aaPredicted RBP26.06■■□□□ 1.76
SYNGR3-204ENST00000564642 ACEP12821 1306 aa26.06■■□□□ 1.76
SYNGR3-204ENST00000564642 SRCAPQ6ZRS2 3230 aa26.05■■□□□ 1.76
SYNGR3-204ENST00000564642 ALS2Q96Q42 1657 aa26.04■■□□□ 1.76
SYNGR3-204ENST00000564642 PPIP5K1Q6PFW1 1433 aa26.04■■□□□ 1.76
SYNGR3-204ENST00000564642 CLSPNQ9HAW4 1339 aa26.03■■□□□ 1.76
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms