RNA–Protein interactions for RNA: ENST00000561781.1

RAB40C-206, Transcript of RAB40C, member RAS oncogene family, humanhuman

TSL 2

Gene RAB40C, Length 2,439 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-206ENST00000561781 ERBB4Q15303 1308 aa23.79■■□□□ 1.4
RAB40C-206ENST00000561781 PTPRMP28827 1452 aa23.79■■□□□ 1.4
RAB40C-206ENST00000561781 TERF1P54274 439 aa23.79■■□□□ 1.4
RAB40C-206ENST00000561781 KIAA1211Q6ZU35 1233 aa23.79■■□□□ 1.4
RAB40C-206ENST00000561781 EFCAB6Q5THR3 1501 aa23.77■■□□□ 1.4
RAB40C-206ENST00000561781 BCL11BQ9C0K0 894 aaPredicted RBP23.76■■□□□ 1.39
RAB40C-206ENST00000561781 ANTXR1Q9H6X2 564 aa23.76■■□□□ 1.39
RAB40C-206ENST00000561781 E9PCH4 1651 aa23.76■■□□□ 1.39
RAB40C-206ENST00000561781 C3P01024 1663 aa23.76■■□□□ 1.39
RAB40C-206ENST00000561781 NCLP19338 710 aaKnown RBP23.75■■□□□ 1.39
RAB40C-206ENST00000561781 SLKQ9H2G2 1235 aaPredicted RBP23.75■■□□□ 1.39
RAB40C-206ENST00000561781 VIRMAQ69YN4 1812 aaKnown RBP23.75■■□□□ 1.39
RAB40C-206ENST00000561781 NLRP13Q86W25 1043 aa23.74■■□□□ 1.39
RAB40C-206ENST00000561781 LMTK2Q8IWU2 1503 aa23.74■■□□□ 1.39
RAB40C-206ENST00000561781 ZC3H13Q5T200 1668 aaKnown RBP23.74■■□□□ 1.39
RAB40C-206ENST00000561781 GRPEL1Q9HAV7 217 aa23.73■■□□□ 1.39
RAB40C-206ENST00000561781 TET3O43151 1660 aa23.73■■□□□ 1.39
RAB40C-206ENST00000561781 UGGT1Q9NYU2 1555 aa23.72■■□□□ 1.39
RAB40C-206ENST00000561781 PPP6R1Q9UPN7 881 aa23.72■■□□□ 1.39
RAB40C-206ENST00000561781 USP19O94966 1318 aa23.7■■□□□ 1.38
RAB40C-206ENST00000561781 MTERF4Q7Z6M4 381 aaKnown RBP23.7■■□□□ 1.38
RAB40C-206ENST00000561781 MCM4P33991 863 aa23.7■■□□□ 1.38
RAB40C-206ENST00000561781 GZF1Q9H116 711 aaPredicted RBP23.69■■□□□ 1.38
RAB40C-206ENST00000561781 BBXQ8WY36 941 aaPredicted RBP23.68■■□□□ 1.38
RAB40C-206ENST00000561781 UTP14CQ5TAP6 766 aaKnown RBP23.67■■□□□ 1.38
RAB40C-206ENST00000561781 ERVK-7P63135 1459 aa23.67■■□□□ 1.38
RAB40C-206ENST00000561781 PARD3Q8TEW0 1356 aa23.67■■□□□ 1.38
RAB40C-206ENST00000561781 PLA2R1Q13018 1463 aa23.66■■□□□ 1.38
RAB40C-206ENST00000561781 MROH2AA6NES4 1674 aa23.66■■□□□ 1.38
RAB40C-206ENST00000561781 OFD1O75665 1012 aa23.66■■□□□ 1.38
RAB40C-206ENST00000561781 PDZRN4Q6ZMN7 1036 aaPredicted RBP23.66■■□□□ 1.38
RAB40C-206ENST00000561781 RIPK4P57078 832 aa23.65■■□□□ 1.38
RAB40C-206ENST00000561781 BLMP54132 1417 aaPredicted RBP23.65■■□□□ 1.38
RAB40C-206ENST00000561781 PREX1Q8TCU6 1659 aa23.64■■□□□ 1.38
RAB40C-206ENST00000561781 TRAK2O60296 914 aa23.64■■□□□ 1.38
RAB40C-206ENST00000561781 SYNMO15061 1565 aa23.64■■□□□ 1.37
RAB40C-206ENST00000561781 ARHGAP31Q2M1Z3 1444 aa23.64■■□□□ 1.37
RAB40C-206ENST00000561781 CARD11Q9BXL7 1154 aa23.63■■□□□ 1.37
RAB40C-206ENST00000561781 ST20-MTHFSA0A0A6YYL1 179 aa23.61■■□□□ 1.37
RAB40C-206ENST00000561781 CANXP27824 592 aaKnown RBP23.61■■□□□ 1.37
RAB40C-206ENST00000561781 TNRQ92752 1358 aa23.61■■□□□ 1.37
RAB40C-206ENST00000561781 RALGAPBQ86X10 1494 aa23.61■■□□□ 1.37
RAB40C-206ENST00000561781 FAM13BQ9NYF5 915 aa23.6■■□□□ 1.37
RAB40C-206ENST00000561781 NOS1P29475 1434 aa23.6■■□□□ 1.37
RAB40C-206ENST00000561781 SEC24BO95487 1268 aa23.6■■□□□ 1.37
RAB40C-206ENST00000561781 SENP3Q9H4L4 574 aaPredicted RBP23.6■■□□□ 1.37
RAB40C-206ENST00000561781 SPATA31D1Q6ZQQ2 1576 aa23.59■■□□□ 1.37
RAB40C-206ENST00000561781 GTF2E1P29083 439 aaPredicted RBP23.59■■□□□ 1.37
RAB40C-206ENST00000561781 IDI1Q13907 227 aa23.59■■□□□ 1.37
RAB40C-206ENST00000561781 TAF7LQ5H9L4 462 aa23.59■■□□□ 1.37
RAB40C-206ENST00000561781 NAP1L2Q9ULW6 460 aaPredicted RBP23.58■■□□□ 1.37
RAB40C-206ENST00000561781 SPHKAPQ2M3C7 1700 aa23.58■■□□□ 1.36
RAB40C-206ENST00000561781 CHGAP10645 457 aaKnown RBP23.58■■□□□ 1.36
RAB40C-206ENST00000561781 DMTNQ08495 405 aa23.58■■□□□ 1.36
RAB40C-206ENST00000561781 ZHX1Q9UKY1 873 aaPredicted RBP23.58■■□□□ 1.36
RAB40C-206ENST00000561781 INSRP06213 1382 aa23.57■■□□□ 1.36
RAB40C-206ENST00000561781 ZSCAN30Q86W11 494 aa23.56■■□□□ 1.36
RAB40C-206ENST00000561781 PTPRTO14522 1441 aa23.55■■□□□ 1.36
RAB40C-206ENST00000561781 UHRF1BP1Q6BDS2 1440 aa23.55■■□□□ 1.36
RAB40C-206ENST00000561781 CLTCL1P53675 1640 aa23.55■■□□□ 1.36
RAB40C-206ENST00000561781 DDX11L8A8MPP1 907 aa23.54■■□□□ 1.36
RAB40C-206ENST00000561781 STAC3Q96MF2 364 aa23.54■■□□□ 1.36
RAB40C-206ENST00000561781 HSPA2P54652 639 aa23.54■■□□□ 1.36
RAB40C-206ENST00000561781 TRPM2O94759 1503 aa23.53■■□□□ 1.36
RAB40C-206ENST00000561781 NLRP1Q9C000 1473 aa23.53■■□□□ 1.36
RAB40C-206ENST00000561781 MYO3AQ8NEV4 1616 aa23.53■■□□□ 1.36
RAB40C-206ENST00000561781 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.52■■□□□ 1.36
RAB40C-206ENST00000561781 TNNT2P45379 298 aaPredicted RBP23.52■■□□□ 1.36
RAB40C-206ENST00000561781 CCDC173Q0VFZ6 552 aa23.52■■□□□ 1.36
RAB40C-206ENST00000561781 DUSP27Q5VZP5 1158 aa23.52■■□□□ 1.36
RAB40C-206ENST00000561781 NUTM2DQ5VT03 806 aaPredicted RBP23.51■■□□□ 1.35
RAB40C-206ENST00000561781 CCDC144AA2RUR9 1427 aa23.51■■□□□ 1.35
RAB40C-206ENST00000561781 MSNP26038 577 aaKnown RBP23.51■■□□□ 1.35
RAB40C-206ENST00000561781 RGL3Q3MIN7 710 aa23.51■■□□□ 1.35
RAB40C-206ENST00000561781 CHMP5Q9NZZ3 219 aa23.51■■□□□ 1.35
RAB40C-206ENST00000561781 TBC1D2Q9BYX2 928 aa23.5■■□□□ 1.35
RAB40C-206ENST00000561781 PIK3C2BO00750 1634 aa23.5■■□□□ 1.35
RAB40C-206ENST00000561781 PER1O15534 1290 aaPredicted RBP23.5■■□□□ 1.35
RAB40C-206ENST00000561781 UPF2Q9HAU5 1272 aaKnown RBP23.5■■□□□ 1.35
RAB40C-206ENST00000561781 STAG3Q9UJ98 1225 aa23.48■■□□□ 1.35
RAB40C-206ENST00000561781 CC2D1BQ5T0F9 858 aaKnown RBP23.48■■□□□ 1.35
RAB40C-206ENST00000561781 AEBP2Q6ZN18 517 aaPredicted RBP23.48■■□□□ 1.35
RAB40C-206ENST00000561781 IPO4Q8TEX9 1081 aaKnown RBP23.48■■□□□ 1.35
RAB40C-206ENST00000561781 DYNC1I1O14576 645 aa23.47■■□□□ 1.35
RAB40C-206ENST00000561781 PPP1R9BQ96SB3 815 aa23.47■■□□□ 1.35
RAB40C-206ENST00000561781 MAPK8IP3Q9UPT6 1336 aa23.47■■□□□ 1.35
RAB40C-206ENST00000561781 IGHDP01880 384 aa23.46■■□□□ 1.35
RAB40C-206ENST00000561781 EIF3AQ14152 1382 aaKnown RBP23.46■■□□□ 1.35
RAB40C-206ENST00000561781 CEP170BQ9Y4F5 1589 aaPredicted RBP23.45■■□□□ 1.34
RAB40C-206ENST00000561781 PLEKHH1Q9ULM0 1364 aa23.45■■□□□ 1.34
RAB40C-206ENST00000561781 LMTK3Q96Q04 1460 aa23.45■■□□□ 1.34
RAB40C-206ENST00000561781 KIF20AO95235 890 aa23.44■■□□□ 1.34
RAB40C-206ENST00000561781 SLC52A1Q9NWF4 448 aa23.44■■□□□ 1.34
RAB40C-206ENST00000561781 R3HCC1Q9Y3T6 440 aaKnown RBP23.44■■□□□ 1.34
RAB40C-206ENST00000561781 MYO5BQ9ULV0 1848 aa23.44■■□□□ 1.34
RAB40C-206ENST00000561781 PRDM10Q9NQV6 1147 aa23.43■■□□□ 1.34
RAB40C-206ENST00000561781 TBC1D32Q96NH3 1257 aa23.43■■□□□ 1.34
RAB40C-206ENST00000561781 ADAMTS8Q9UP79 889 aa23.43■■□□□ 1.34
RAB40C-206ENST00000561781 UQCRHLA0A096LP55 91 aa23.42■■□□□ 1.34
RAB40C-206ENST00000561781 UQCRHP07919 91 aa23.42■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 8 ms