RNA–Protein interactions for RNA: ENST00000561266.5

TPM1-230, Transcript of tropomyosin 1, humanhuman

TSL 3

Gene TPM1, Length 671 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-230ENST00000561266 NBPF8Q3BBV2 869 aa20.1■□□□□ 0.81
TPM1-230ENST00000561266 SIRT1Q96EB6 747 aa20.1■□□□□ 0.81
TPM1-230ENST00000561266 PRAM1Q96QH2 718 aa20.1■□□□□ 0.81
TPM1-230ENST00000561266 ARHGEF28Q8N1W1 1705 aaKnown RBP20.1■□□□□ 0.81
TPM1-230ENST00000561266 BRINP3Q76B58 766 aa20.08■□□□□ 0.81
TPM1-230ENST00000561266 TRPM1Q7Z4N2 1603 aa20.08■□□□□ 0.8
TPM1-230ENST00000561266 CDC42BPGQ6DT37 1551 aa20.08■□□□□ 0.8
TPM1-230ENST00000561266 C1orf167Q5SNV9 1468 aa20.07■□□□□ 0.8
TPM1-230ENST00000561266 PHLPP1O60346 1717 aa20.07■□□□□ 0.8
TPM1-230ENST00000561266 RGPD8O14715 1765 aaPredicted RBP20.06■□□□□ 0.8
TPM1-230ENST00000561266 DDX17Q92841 729 aaKnown RBP20.06■□□□□ 0.8
TPM1-230ENST00000561266 FMN2Q9NZ56 1722 aa20.05■□□□□ 0.8
TPM1-230ENST00000561266 ORAI2Q96SN7 254 aa20.05■□□□□ 0.8
TPM1-230ENST00000561266 NUTM2FA1L443 756 aa20.04■□□□□ 0.8
TPM1-230ENST00000561266 COL16A1Q07092 1604 aaPredicted RBP20.04■□□□□ 0.8
TPM1-230ENST00000561266 AHDC1Q5TGY3 1603 aaPredicted RBP20.03■□□□□ 0.8
TPM1-230ENST00000561266 NHSL1Q5SYE7 1610 aa20.02■□□□□ 0.8
TPM1-230ENST00000561266 POGKQ9P215 609 aa20.02■□□□□ 0.8
TPM1-230ENST00000561266 TONSLQ96HA7 1378 aa20.01■□□□□ 0.79
TPM1-230ENST00000561266 HIRIP3Q9BW71 556 aaPredicted RBP20.01■□□□□ 0.79
TPM1-230ENST00000561266 MINK1Q8N4C8 1332 aaPredicted RBP20.01■□□□□ 0.79
TPM1-230ENST00000561266 USP32Q8NFA0 1604 aa19.99■□□□□ 0.79
TPM1-230ENST00000561266 ADGRB2O60241 1585 aa19.99■□□□□ 0.79
TPM1-230ENST00000561266 ESCO1Q5FWF5 840 aa19.95■□□□□ 0.78
TPM1-230ENST00000561266 MED1Q15648 1581 aaPredicted RBP19.95■□□□□ 0.78
TPM1-230ENST00000561266 PRR36Q9H6K5 1346 aa19.94■□□□□ 0.78
TPM1-230ENST00000561266 ROCK2O75116 1388 aaKnown RBP19.94■□□□□ 0.78
TPM1-230ENST00000561266 QRICH2Q9H0J4 1663 aa19.92■□□□□ 0.78
TPM1-230ENST00000561266 GPRASP1Q5JY77 1395 aa19.92■□□□□ 0.78
TPM1-230ENST00000561266 WASLO00401 505 aaPredicted RBP19.91■□□□□ 0.78
TPM1-230ENST00000561266 CCER1Q8TC90 406 aaPredicted RBP19.91■□□□□ 0.78
TPM1-230ENST00000561266 RALGAPBQ86X10 1494 aa19.91■□□□□ 0.78
TPM1-230ENST00000561266 FOXO3O43524 673 aa19.9■□□□□ 0.78
TPM1-230ENST00000561266 XPCQ01831 940 aaPredicted RBP19.9■□□□□ 0.78
TPM1-230ENST00000561266 CLSPNQ9HAW4 1339 aa19.9■□□□□ 0.78
TPM1-230ENST00000561266 SOS2Q07890 1332 aaPredicted RBP19.89■□□□□ 0.77
TPM1-230ENST00000561266 SHPRHQ149N8 1683 aa19.89■□□□□ 0.77
TPM1-230ENST00000561266 CENPJQ9HC77 1338 aaPredicted RBP19.89■□□□□ 0.77
TPM1-230ENST00000561266 JCADQ9P266 1359 aa19.89■□□□□ 0.77
TPM1-230ENST00000561266 TULP4Q9NRJ4 1543 aa19.88■□□□□ 0.77
TPM1-230ENST00000561266 PXDNQ92626 1479 aa19.88■□□□□ 0.77
TPM1-230ENST00000561266 CDK19Q9BWU1 502 aa19.87■□□□□ 0.77
TPM1-230ENST00000561266 ANKARQ7Z5J8 1434 aa19.86■□□□□ 0.77
TPM1-230ENST00000561266 DISP3Q9P2K9 1392 aa19.86■□□□□ 0.77
TPM1-230ENST00000561266 PMFBP1Q8TBY8 1022 aa19.86■□□□□ 0.77
TPM1-230ENST00000561266 PHF8Q9UPP1 1060 aa19.86■□□□□ 0.77
TPM1-230ENST00000561266 KIF1AQ12756 1690 aa19.86■□□□□ 0.77
TPM1-230ENST00000561266 LRP6O75581 1613 aa19.86■□□□□ 0.77
TPM1-230ENST00000561266 ATP7BP35670 1465 aa19.86■□□□□ 0.77
TPM1-230ENST00000561266 CARD11Q9BXL7 1154 aa19.85■□□□□ 0.77
TPM1-230ENST00000561266 PNPLA6Q8IY17 1366 aa19.83■□□□□ 0.77
TPM1-230ENST00000561266 LRRC59Q96AG4 307 aaKnown RBP19.83■□□□□ 0.77
TPM1-230ENST00000561266 NUDT16Q96DE0 195 aaKnown RBP19.83■□□□□ 0.77
TPM1-230ENST00000561266 TOPAZ1Q8N9V7 1692 aa19.83■□□□□ 0.76
TPM1-230ENST00000561266 NPHP3Q7Z494 1330 aa19.82■□□□□ 0.76
TPM1-230ENST00000561266 CABP2Q9NPB3 220 aa19.81■□□□□ 0.76
TPM1-230ENST00000561266 RGS17Q9UGC6 210 aaPredicted RBP19.81■□□□□ 0.76
TPM1-230ENST00000561266 KRT28Q7Z3Y7 464 aa19.8■□□□□ 0.76
TPM1-230ENST00000561266 ITSN1Q15811 1721 aa19.79■□□□□ 0.76
TPM1-230ENST00000561266 TIMELESSQ9UNS1 1208 aa19.79■□□□□ 0.76
TPM1-230ENST00000561266 TRPM3Q9HCF6 1732 aaPredicted RBP19.79■□□□□ 0.76
TPM1-230ENST00000561266 NUTM2BA6NNL0 878 aaPredicted RBP19.78■□□□□ 0.76
TPM1-230ENST00000561266 NUTM2EB1AL46 878 aaPredicted RBP19.78■□□□□ 0.76
TPM1-230ENST00000561266 ILDR2Q71H61 639 aa19.78■□□□□ 0.76
TPM1-230ENST00000561266 NUTM2AQ8IVF1 878 aaPredicted RBP19.78■□□□□ 0.76
TPM1-230ENST00000561266 SPATA31A6Q5VVP1 1343 aa19.77■□□□□ 0.76
TPM1-230ENST00000561266 COL22A1Q8NFW1 1626 aaPredicted RBP19.77■□□□□ 0.76
TPM1-230ENST00000561266 EIF3AQ14152 1382 aaKnown RBP19.77■□□□□ 0.76
TPM1-230ENST00000561266 SPATA31A3Q5VYP0 1347 aa19.76■□□□□ 0.75
TPM1-230ENST00000561266 SRPK2P78362 688 aaKnown RBP19.75■□□□□ 0.75
TPM1-230ENST00000561266 PSME1Q06323 249 aa19.74■□□□□ 0.75
TPM1-230ENST00000561266 CCDC61Q9Y6R9 512 aa19.74■□□□□ 0.75
TPM1-230ENST00000561266 ALS2Q96Q42 1657 aa19.73■□□□□ 0.75
TPM1-230ENST00000561266 ST20-MTHFSA0A0A6YYL1 179 aa19.73■□□□□ 0.75
TPM1-230ENST00000561266 PLEKHG3A1L390 1219 aa19.73■□□□□ 0.75
TPM1-230ENST00000561266 TESK2Q96S53 571 aa19.73■□□□□ 0.75
TPM1-230ENST00000561266 NGDNQ8NEJ9 315 aaKnown RBP19.72■□□□□ 0.75
TPM1-230ENST00000561266 ACEP12821 1306 aa19.72■□□□□ 0.75
TPM1-230ENST00000561266 EVC2Q86UK5 1308 aa19.72■□□□□ 0.75
TPM1-230ENST00000561266 SBNO1A3KN83 1393 aa19.71■□□□□ 0.75
TPM1-230ENST00000561266 POLR3AO14802 1390 aaPredicted RBP19.71■□□□□ 0.75
TPM1-230ENST00000561266 SBNO2Q9Y2G9 1366 aa19.71■□□□□ 0.75
TPM1-230ENST00000561266 TNS3Q68CZ2 1445 aa19.71■□□□□ 0.75
TPM1-230ENST00000561266 PPIP5K1Q6PFW1 1433 aa19.71■□□□□ 0.75
TPM1-230ENST00000561266 CABP1Q9NZU7 370 aa19.7■□□□□ 0.74
TPM1-230ENST00000561266 ABCA3Q99758 1704 aa19.69■□□□□ 0.74
TPM1-230ENST00000561266 POTEAQ6S8J7 498 aa19.69■□□□□ 0.74
TPM1-230ENST00000561266 CABLES1Q8TDN4 633 aa19.69■□□□□ 0.74
TPM1-230ENST00000561266 PHF23Q9BUL5 403 aaPredicted RBP19.69■□□□□ 0.74
TPM1-230ENST00000561266 USP47Q96K76 1375 aa19.69■□□□□ 0.74
TPM1-230ENST00000561266 PLEKHG5O94827 1062 aa19.68■□□□□ 0.74
TPM1-230ENST00000561266 ADAMTS2O95450 1211 aa19.68■□□□□ 0.74
TPM1-230ENST00000561266 MARF1Q9Y4F3 1742 aaKnown RBP19.67■□□□□ 0.74
TPM1-230ENST00000561266 CRYBG1Q9Y4K1 1723 aa19.66■□□□□ 0.74
TPM1-230ENST00000561266 MEX3CQ5U5Q3 659 aaKnown RBP19.66■□□□□ 0.74
TPM1-230ENST00000561266 LMOD2Q6P5Q4 547 aa19.66■□□□□ 0.74
TPM1-230ENST00000561266 AKAP12Q02952 1782 aa19.65■□□□□ 0.74
TPM1-230ENST00000561266 PAK3O75914 559 aaPredicted RBP19.63■□□□□ 0.73
TPM1-230ENST00000561266 C8orf37Q96NL8 207 aa19.63■□□□□ 0.73
TPM1-230ENST00000561266 AFF2P51816 1311 aa19.62■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms