RNA–Protein interactions for RNA: ENST00000558955.2

PKNOX1-208, Transcript of PBX/knotted 1 homeobox 1, humanhuman

TSL 2

Gene PKNOX1, Length 629 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1-208ENST00000558955 DDX17Q92841 729 aaKnown RBP18.18■□□□□ 0.5
PKNOX1-208ENST00000558955 STAC3Q96MF2 364 aa18.17■□□□□ 0.5
PKNOX1-208ENST00000558955 ADGRB1O14514 1584 aa18.17■□□□□ 0.5
PKNOX1-208ENST00000558955 JCADQ9P266 1359 aa18.17■□□□□ 0.5
PKNOX1-208ENST00000558955 SIRT1Q96EB6 747 aa18.16■□□□□ 0.5
PKNOX1-208ENST00000558955 ORAI2Q96SN7 254 aa18.16■□□□□ 0.5
PKNOX1-208ENST00000558955 CDC42BPGQ6DT37 1551 aa18.15■□□□□ 0.5
PKNOX1-208ENST00000558955 NHSL1Q5SYE7 1610 aa18.15■□□□□ 0.5
PKNOX1-208ENST00000558955 PRAM1Q96QH2 718 aa18.14■□□□□ 0.49
PKNOX1-208ENST00000558955 SIN3AQ96ST3 1273 aa18.14■□□□□ 0.49
PKNOX1-208ENST00000558955 NUTM2FA1L443 756 aa18.13■□□□□ 0.49
PKNOX1-208ENST00000558955 SAFB2Q14151 953 aaKnown RBP eCLIP18.13■□□□□ 0.49
PKNOX1-208ENST00000558955 PIAS4Q8N2W9 510 aaPredicted RBP18.13■□□□□ 0.49
PKNOX1-208ENST00000558955 TRAK1Q9UPV9 953 aa18.13■□□□□ 0.49
PKNOX1-208ENST00000558955 DLC1Q96QB1 1528 aa18.11■□□□□ 0.49
PKNOX1-208ENST00000558955 NEUROD1Q13562 356 aa18.1■□□□□ 0.49
PKNOX1-208ENST00000558955 ESCO1Q5FWF5 840 aa18.1■□□□□ 0.49
PKNOX1-208ENST00000558955 POGKQ9P215 609 aa18.1■□□□□ 0.49
PKNOX1-208ENST00000558955 RGS17Q9UGC6 210 aaPredicted RBP18.1■□□□□ 0.49
PKNOX1-208ENST00000558955 SHPRHQ149N8 1683 aa18.09■□□□□ 0.49
PKNOX1-208ENST00000558955 L3MBTL2Q969R5 705 aa18.08■□□□□ 0.48
PKNOX1-208ENST00000558955 LRRC59Q96AG4 307 aaKnown RBP18.08■□□□□ 0.48
PKNOX1-208ENST00000558955 FMN2Q9NZ56 1722 aa18.08■□□□□ 0.48
PKNOX1-208ENST00000558955 SPATA31A6Q5VVP1 1343 aa18.07■□□□□ 0.48
PKNOX1-208ENST00000558955 LRP6O75581 1613 aa18.07■□□□□ 0.48
PKNOX1-208ENST00000558955 SOS2Q07890 1332 aaPredicted RBP18.06■□□□□ 0.48
PKNOX1-208ENST00000558955 NUTM2BA6NNL0 878 aaPredicted RBP18.05■□□□□ 0.48
PKNOX1-208ENST00000558955 NUTM2EB1AL46 878 aaPredicted RBP18.05■□□□□ 0.48
PKNOX1-208ENST00000558955 NBPF1Q3BBV0 1214 aa18.05■□□□□ 0.48
PKNOX1-208ENST00000558955 NUTM2AQ8IVF1 878 aaPredicted RBP18.05■□□□□ 0.48
PKNOX1-208ENST00000558955 HIRIP3Q9BW71 556 aaPredicted RBP18.05■□□□□ 0.48
PKNOX1-208ENST00000558955 MINK1Q8N4C8 1332 aaPredicted RBP18.04■□□□□ 0.48
PKNOX1-208ENST00000558955 FOXO3O43524 673 aa18.04■□□□□ 0.48
PKNOX1-208ENST00000558955 PNPLA6Q8IY17 1366 aa18.04■□□□□ 0.48
PKNOX1-208ENST00000558955 KIAA1210Q9ULL0 1709 aa18.03■□□□□ 0.48
PKNOX1-208ENST00000558955 XPCQ01831 940 aaPredicted RBP18.03■□□□□ 0.48
PKNOX1-208ENST00000558955 ARHGEF28Q8N1W1 1705 aaKnown RBP18.03■□□□□ 0.48
PKNOX1-208ENST00000558955 NPHP3Q7Z494 1330 aa18.02■□□□□ 0.48
PKNOX1-208ENST00000558955 RGPD8O14715 1765 aaPredicted RBP18.02■□□□□ 0.48
PKNOX1-208ENST00000558955 MEX3CQ5U5Q3 659 aaKnown RBP18.02■□□□□ 0.48
PKNOX1-208ENST00000558955 ADGRB2O60241 1585 aa18.01■□□□□ 0.47
PKNOX1-208ENST00000558955 PXDNQ92626 1479 aa18.01■□□□□ 0.47
PKNOX1-208ENST00000558955 SOCS7O14512 581 aa18■□□□□ 0.47
PKNOX1-208ENST00000558955 POTEAQ6S8J7 498 aa18■□□□□ 0.47
PKNOX1-208ENST00000558955 PHF8Q9UPP1 1060 aa17.99■□□□□ 0.47
PKNOX1-208ENST00000558955 USP32Q8NFA0 1604 aa17.98■□□□□ 0.47
PKNOX1-208ENST00000558955 KIF1AQ12756 1690 aa17.98■□□□□ 0.47
PKNOX1-208ENST00000558955 WASLO00401 505 aaPredicted RBP17.97■□□□□ 0.47
PKNOX1-208ENST00000558955 ANKARQ7Z5J8 1434 aa17.97■□□□□ 0.47
PKNOX1-208ENST00000558955 PRR36Q9H6K5 1346 aa17.97■□□□□ 0.47
PKNOX1-208ENST00000558955 PMFBP1Q8TBY8 1022 aa17.96■□□□□ 0.47
PKNOX1-208ENST00000558955 KRT28Q7Z3Y7 464 aa17.95■□□□□ 0.46
PKNOX1-208ENST00000558955 TRPM1Q7Z4N2 1603 aa17.94■□□□□ 0.46
PKNOX1-208ENST00000558955 TULP4Q9NRJ4 1543 aa17.94■□□□□ 0.46
PKNOX1-208ENST00000558955 MSH5O43196 834 aa17.94■□□□□ 0.46
PKNOX1-208ENST00000558955 ADAMTS2O95450 1211 aa17.93■□□□□ 0.46
PKNOX1-208ENST00000558955 NBPF8Q3BBV2 869 aa17.93■□□□□ 0.46
PKNOX1-208ENST00000558955 EIF3AQ14152 1382 aaKnown RBP17.92■□□□□ 0.46
PKNOX1-208ENST00000558955 COL22A1Q8NFW1 1626 aaPredicted RBP17.92■□□□□ 0.46
PKNOX1-208ENST00000558955 C8orf37Q96NL8 207 aa17.92■□□□□ 0.46
PKNOX1-208ENST00000558955 SPATA31A3Q5VYP0 1347 aa17.92■□□□□ 0.46
PKNOX1-208ENST00000558955 PSME1Q06323 249 aa17.91■□□□□ 0.46
PKNOX1-208ENST00000558955 CDK19Q9BWU1 502 aa17.91■□□□□ 0.46
PKNOX1-208ENST00000558955 AFF2P51816 1311 aa17.91■□□□□ 0.46
PKNOX1-208ENST00000558955 TONSLQ96HA7 1378 aa17.91■□□□□ 0.46
PKNOX1-208ENST00000558955 ZNF772Q68DY9 489 aaPredicted RBP17.9■□□□□ 0.46
PKNOX1-208ENST00000558955 CENPJQ9HC77 1338 aaPredicted RBP17.9■□□□□ 0.46
PKNOX1-208ENST00000558955 ROCK2O75116 1388 aaKnown RBP17.9■□□□□ 0.46
PKNOX1-208ENST00000558955 NUDT16Q96DE0 195 aaKnown RBP17.89■□□□□ 0.45
PKNOX1-208ENST00000558955 PCGF6Q9BYE7 350 aa17.89■□□□□ 0.45
PKNOX1-208ENST00000558955 ATP7BP35670 1465 aa17.88■□□□□ 0.45
PKNOX1-208ENST00000558955 TNS3Q68CZ2 1445 aa17.88■□□□□ 0.45
PKNOX1-208ENST00000558955 NGLY1Q96IV0 654 aa17.87■□□□□ 0.45
PKNOX1-208ENST00000558955 SBNO1A3KN83 1393 aa17.87■□□□□ 0.45
PKNOX1-208ENST00000558955 QRICH2Q9H0J4 1663 aa17.87■□□□□ 0.45
PKNOX1-208ENST00000558955 NGDNQ8NEJ9 315 aaKnown RBP17.86■□□□□ 0.45
PKNOX1-208ENST00000558955 PLEKHG5O94827 1062 aa17.85■□□□□ 0.45
PKNOX1-208ENST00000558955 LMOD2Q6P5Q4 547 aa17.85■□□□□ 0.45
PKNOX1-208ENST00000558955 ITSN1Q15811 1721 aa17.84■□□□□ 0.45
PKNOX1-208ENST00000558955 GPRASP1Q5JY77 1395 aa17.84■□□□□ 0.45
PKNOX1-208ENST00000558955 CABLES1Q8TDN4 633 aa17.84■□□□□ 0.45
PKNOX1-208ENST00000558955 TRPM3Q9HCF6 1732 aaPredicted RBP17.84■□□□□ 0.45
PKNOX1-208ENST00000558955 SRPK2P78362 688 aaKnown RBP17.83■□□□□ 0.44
PKNOX1-208ENST00000558955 CABP2Q9NPB3 220 aa17.83■□□□□ 0.44
PKNOX1-208ENST00000558955 CCDC61Q9Y6R9 512 aa17.83■□□□□ 0.44
PKNOX1-208ENST00000558955 QTRT2Q9H974 415 aaKnown RBP17.82■□□□□ 0.44
PKNOX1-208ENST00000558955 TOPAZ1Q8N9V7 1692 aa17.82■□□□□ 0.44
PKNOX1-208ENST00000558955 MARF1Q9Y4F3 1742 aaKnown RBP17.81■□□□□ 0.44
PKNOX1-208ENST00000558955 ARHGEF10O15013 1369 aa17.81■□□□□ 0.44
PKNOX1-208ENST00000558955 RXRBP28702 533 aa17.81■□□□□ 0.44
PKNOX1-208ENST00000558955 FNBP4Q8N3X1 1017 aaPredicted RBP17.81■□□□□ 0.44
PKNOX1-208ENST00000558955 CARD11Q9BXL7 1154 aa17.81■□□□□ 0.44
PKNOX1-208ENST00000558955 USP21Q9UK80 565 aa17.81■□□□□ 0.44
PKNOX1-208ENST00000558955 RALGAPBQ86X10 1494 aa17.81■□□□□ 0.44
PKNOX1-208ENST00000558955 ACEP12821 1306 aa17.8■□□□□ 0.44
PKNOX1-208ENST00000558955 PAK3O75914 559 aaPredicted RBP17.8■□□□□ 0.44
PKNOX1-208ENST00000558955 PLEKHG3A1L390 1219 aa17.79■□□□□ 0.44
PKNOX1-208ENST00000558955 HAP1P54257 671 aaPredicted RBP17.79■□□□□ 0.44
PKNOX1-208ENST00000558955 ALS2Q96Q42 1657 aa17.79■□□□□ 0.44
PKNOX1-208ENST00000558955 POLR3AO14802 1390 aaPredicted RBP17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms