RNA–Protein interactions for RNA: ENST00000558771.1

LRRC28-208, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4

Gene LRRC28, Length 586 nt, Biotype processed transcript, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-208ENST00000558771 ZSWIM6Q9HCJ5 1215 aa8.9□□□□□ -0.98
LRRC28-208ENST00000558771 SLC34A2O95436 690 aa8.89□□□□□ -0.99
LRRC28-208ENST00000558771 HOXB1P14653 301 aaPredicted RBP8.89□□□□□ -0.99
LRRC28-208ENST00000558771 FBXO31Q5XUX0 539 aaPredicted RBP8.89□□□□□ -0.99
LRRC28-208ENST00000558771 ALKQ9UM73 1620 aa8.89□□□□□ -0.99
LRRC28-208ENST00000558771 VWDEQ8N2E2 1590 aa8.89□□□□□ -0.99
LRRC28-208ENST00000558771 CCNB3Q8WWL7 1395 aa8.88□□□□□ -0.99
LRRC28-208ENST00000558771 TNRQ92752 1358 aa8.88□□□□□ -0.99
LRRC28-208ENST00000558771 GPR153Q6NV75 609 aa8.88□□□□□ -0.99
LRRC28-208ENST00000558771 MARVELD3Q96A59 401 aa8.88□□□□□ -0.99
LRRC28-208ENST00000558771 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.87□□□□□ -0.99
LRRC28-208ENST00000558771 ZNF644Q9H582 1327 aaPredicted RBP8.87□□□□□ -0.99
LRRC28-208ENST00000558771 ARSIQ5FYB1 569 aa8.87□□□□□ -0.99
LRRC28-208ENST00000558771 PPP1R15BQ5SWA1 713 aa8.87□□□□□ -0.99
LRRC28-208ENST00000558771 ANKLE2Q86XL3 938 aa8.87□□□□□ -0.99
LRRC28-208ENST00000558771 DHX29Q7Z478 1369 aaKnown RBP8.86□□□□□ -0.99
LRRC28-208ENST00000558771 PZPP20742 1482 aa8.86□□□□□ -0.99
LRRC28-208ENST00000558771 MBD5Q9P267 1494 aa8.86□□□□□ -0.99
LRRC28-208ENST00000558771 MFSD10Q14728 455 aa8.86□□□□□ -0.99
LRRC28-208ENST00000558771 DDX27Q96GQ7 796 aaKnown RBP8.86□□□□□ -0.99
LRRC28-208ENST00000558771 MED14O60244 1454 aa8.85□□□□□ -0.99
LRRC28-208ENST00000558771 KIF3BO15066 747 aa8.85□□□□□ -0.99
LRRC28-208ENST00000558771 EMP3P54852 163 aa8.85□□□□□ -0.99
LRRC28-208ENST00000558771 THEMISQ8N1K5 641 aaPredicted RBP8.85□□□□□ -0.99
LRRC28-208ENST00000558771 RTEL1-TNFRSF6BF6WH68 1400 aa8.85□□□□□ -0.99
LRRC28-208ENST00000558771 NPHP4O75161 1426 aaPredicted RBP8.85□□□□□ -0.99
LRRC28-208ENST00000558771 KDM5DQ9BY66 1539 aa8.85□□□□□ -0.99
LRRC28-208ENST00000558771 DEPDC5O75140 1603 aa8.84□□□□□ -0.99
LRRC28-208ENST00000558771 TIAM1Q13009 1591 aa8.84□□□□□ -0.99
LRRC28-208ENST00000558771 PTCD2Q8WV60 388 aaKnown RBP8.84□□□□□ -0.99
LRRC28-208ENST00000558771 KHSRPQ92945 711 aaKnown RBP eCLIP8.84□□□□□ -0.99
LRRC28-208ENST00000558771 MIA2Q96PC5 1412 aa8.84□□□□□ -0.99
LRRC28-208ENST00000558771 UGGT1Q9NYU2 1555 aa8.84□□□□□ -0.99
LRRC28-208ENST00000558771 PCDHGA4Q9Y5G9 962 aa8.84□□□□□ -0.99
LRRC28-208ENST00000558771 MTUS2Q5JR59 1369 aa8.84□□□□□ -0.99
LRRC28-208ENST00000558771 STRCP1A6NGW2 1772 aa8.84□□□□□ -1
LRRC28-208ENST00000558771 NLRP1Q9C000 1473 aa8.83□□□□□ -1
LRRC28-208ENST00000558771 WASHC2CQ9Y4E1 1318 aa8.83□□□□□ -1
LRRC28-208ENST00000558771 TSHZ2Q9NRE2 1034 aa8.83□□□□□ -1
LRRC28-208ENST00000558771 IQGAP1P46940 1657 aa8.83□□□□□ -1
LRRC28-208ENST00000558771 LRRC7Q96NW7 1537 aa8.83□□□□□ -1
LRRC28-208ENST00000558771 FAM135AQ9P2D6 1515 aa8.83□□□□□ -1
LRRC28-208ENST00000558771 PLCB2Q00722 1185 aa8.82□□□□□ -1
LRRC28-208ENST00000558771 RGS17Q9UGC6 210 aaPredicted RBP8.82□□□□□ -1
LRRC28-208ENST00000558771 RNF17Q9BXT8 1623 aaKnown RBP8.82□□□□□ -1
LRRC28-208ENST00000558771 FAM205CA6NFA0 338 aa8.81□□□□□ -1
LRRC28-208ENST00000558771 TBC1D12O60347 775 aa8.81□□□□□ -1
LRRC28-208ENST00000558771 CCDC141Q6ZP82 1450 aa8.81□□□□□ -1
LRRC28-208ENST00000558771 SYNMO15061 1565 aa8.81□□□□□ -1
LRRC28-208ENST00000558771 EHBP1L1Q8N3D4 1523 aa8.8□□□□□ -1
LRRC28-208ENST00000558771 POTEB3A0JP26 581 aa8.79□□□□□ -1
LRRC28-208ENST00000558771 NUDT7P0C024 238 aa8.79□□□□□ -1
LRRC28-208ENST00000558771 POTEBQ6S5H4 581 aa8.79□□□□□ -1
LRRC28-208ENST00000558771 OXER1Q8TDS5 423 aa8.79□□□□□ -1
LRRC28-208ENST00000558771 UPF1Q92900 1129 aaKnown RBP eCLIP8.79□□□□□ -1
LRRC28-208ENST00000558771 CEP162Q5TB80 1403 aa8.79□□□□□ -1
LRRC28-208ENST00000558771 ERBB3P21860 1342 aa8.79□□□□□ -1
LRRC28-208ENST00000558771 ZC3H13Q5T200 1668 aaKnown RBP8.78□□□□□ -1
LRRC28-208ENST00000558771 CDAN1Q8IWY9 1227 aa8.78□□□□□ -1
LRRC28-208ENST00000558771 HS3ST6Q96QI5 342 aa8.78□□□□□ -1
LRRC28-208ENST00000558771 CAMSAP2Q08AD1 1489 aa8.77□□□□□ -1
LRRC28-208ENST00000558771 RSPH4AQ5TD94 716 aa8.77□□□□□ -1.01
LRRC28-208ENST00000558771 ERVK-7P63135 1459 aa8.77□□□□□ -1.01
LRRC28-208ENST00000558771 ABCC3O15438 1527 aa8.76□□□□□ -1.01
LRRC28-208ENST00000558771 XIRP1Q702N8 1843 aaKnown RBP8.76□□□□□ -1.01
LRRC28-208ENST00000558771 ZNF316A6NFI3 1004 aaPredicted RBP8.76□□□□□ -1.01
LRRC28-208ENST00000558771 POTEAQ6S8J7 498 aa8.76□□□□□ -1.01
LRRC28-208ENST00000558771 WDR70Q9NW82 654 aa8.76□□□□□ -1.01
LRRC28-208ENST00000558771 UBR1Q8IWV7 1749 aa8.75□□□□□ -1.01
LRRC28-208ENST00000558771 ARHGEF5Q12774 1597 aa8.75□□□□□ -1.01
LRRC28-208ENST00000558771 TSPY4P0CV99 314 aa8.75□□□□□ -1.01
LRRC28-208ENST00000558771 TSPY10P0CW01 314 aa8.75□□□□□ -1.01
LRRC28-208ENST00000558771 LTKP29376 864 aa8.75□□□□□ -1.01
LRRC28-208ENST00000558771 CAMK2BQ13554 666 aa8.75□□□□□ -1.01
LRRC28-208ENST00000558771 EMILIN3Q9NT22 766 aa8.75□□□□□ -1.01
LRRC28-208ENST00000558771 CFAP65Q6ZU64 1925 aaKnown RBP8.75□□□□□ -1.01
LRRC28-208ENST00000558771 NCOA2Q15596 1464 aa8.75□□□□□ -1.01
LRRC28-208ENST00000558771 SCAF11Q99590 1463 aaKnown RBP8.75□□□□□ -1.01
LRRC28-208ENST00000558771 MAP3K9P80192 1104 aa8.74□□□□□ -1.01
LRRC28-208ENST00000558771 VARS2Q5ST30 1063 aaKnown RBP8.74□□□□□ -1.01
LRRC28-208ENST00000558771 LHX6Q9UPM6 363 aa8.74□□□□□ -1.01
LRRC28-208ENST00000558771 MROH1Q8NDA8 1641 aa8.73□□□□□ -1.01
LRRC28-208ENST00000558771 FAM135BQ49AJ0 1406 aa8.73□□□□□ -1.01
LRRC28-208ENST00000558771 ARHGAP23Q9P227 1491 aa8.73□□□□□ -1.01
LRRC28-208ENST00000558771 TXNDC2Q86VQ3 553 aa8.73□□□□□ -1.01
LRRC28-208ENST00000558771 CEP152O94986 1710 aa8.73□□□□□ -1.01
LRRC28-208ENST00000558771 SLIT1O75093 1534 aa8.73□□□□□ -1.01
LRRC28-208ENST00000558771 EIF2AK4Q9P2K8 1649 aaKnown RBP8.72□□□□□ -1.01
LRRC28-208ENST00000558771 MAST1Q9Y2H9 1570 aa8.71□□□□□ -1.02
LRRC28-208ENST00000558771 ROBO1Q9Y6N7 1651 aa8.7□□□□□ -1.02
LRRC28-208ENST00000558771 E2F4Q16254 413 aa8.7□□□□□ -1.02
LRRC28-208ENST00000558771 ANO8Q9HCE9 1232 aaPredicted RBP8.7□□□□□ -1.02
LRRC28-208ENST00000558771 EID1Q9Y6B2 187 aa8.7□□□□□ -1.02
LRRC28-208ENST00000558771 SETD1AO15047 1707 aaKnown RBP8.7□□□□□ -1.02
LRRC28-208ENST00000558771 TMEM94Q12767 1356 aa8.7□□□□□ -1.02
LRRC28-208ENST00000558771 EVI5O60447 810 aa8.69□□□□□ -1.02
LRRC28-208ENST00000558771 HAP1P54257 671 aaPredicted RBP8.69□□□□□ -1.02
LRRC28-208ENST00000558771 ZNF687Q8N1G0 1237 aa8.69□□□□□ -1.02
LRRC28-208ENST00000558771 MAP3K1Q13233 1512 aa8.69□□□□□ -1.02
LRRC28-208ENST00000558771 PIK3C2BO00750 1634 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms