RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 PRKAR2BP31323 418 aa15.34■□□□□ 0.05
CCDC88C-211ENST00000556726 ADGRL1O94910 1474 aa15.34■□□□□ 0.05
CCDC88C-211ENST00000556726 PDE3AQ14432 1141 aa15.34■□□□□ 0.05
CCDC88C-211ENST00000556726 FANCAO15360 1455 aa15.33■□□□□ 0.05
CCDC88C-211ENST00000556726 IPO8O15397 1037 aaKnown RBP15.33■□□□□ 0.04
CCDC88C-211ENST00000556726 SLC4A10Q6U841 1118 aa15.33■□□□□ 0.04
CCDC88C-211ENST00000556726 SAMD9LQ8IVG5 1584 aa15.33■□□□□ 0.04
CCDC88C-211ENST00000556726 NECTIN2Q92692 538 aa15.32■□□□□ 0.04
CCDC88C-211ENST00000556726 ANO8Q9HCE9 1232 aaPredicted RBP15.32■□□□□ 0.04
CCDC88C-211ENST00000556726 ADGBQ8N7X0 1667 aa15.32■□□□□ 0.04
CCDC88C-211ENST00000556726 ERCC6L2Q5T890 1561 aa15.32■□□□□ 0.04
CCDC88C-211ENST00000556726 NKTRP30414 1462 aaKnown RBP15.31■□□□□ 0.04
CCDC88C-211ENST00000556726 SSH1Q8WYL5 1049 aa15.31■□□□□ 0.04
CCDC88C-211ENST00000556726 AEBP2Q6ZN18 517 aaPredicted RBP15.31■□□□□ 0.04
CCDC88C-211ENST00000556726 STAC3Q96MF2 364 aa15.31■□□□□ 0.04
CCDC88C-211ENST00000556726 LTV1Q96GA3 475 aaPredicted RBP15.31■□□□□ 0.04
CCDC88C-211ENST00000556726 ABCA8O94911 1581 aa15.3■□□□□ 0.04
CCDC88C-211ENST00000556726 DCTN1Q14203 1278 aa15.3■□□□□ 0.04
CCDC88C-211ENST00000556726 RRS1Q15050 365 aaKnown RBP15.3■□□□□ 0.04
CCDC88C-211ENST00000556726 TXNDC2Q86VQ3 553 aa15.3■□□□□ 0.04
CCDC88C-211ENST00000556726 CDK19Q9BWU1 502 aa15.3■□□□□ 0.04
CCDC88C-211ENST00000556726 LMOD2Q6P5Q4 547 aa15.3■□□□□ 0.04
CCDC88C-211ENST00000556726 CDC42BPAQ5VT25 1732 aa15.29■□□□□ 0.04
CCDC88C-211ENST00000556726 FOXD4L5Q5VV16 416 aaPredicted RBP15.29■□□□□ 0.04
CCDC88C-211ENST00000556726 FOXD4L4Q8WXT5 416 aaPredicted RBP15.29■□□□□ 0.04
CCDC88C-211ENST00000556726 TMPOP42166 694 aaKnown RBP15.29■□□□□ 0.04
CCDC88C-211ENST00000556726 NOL8Q76FK4 1167 aaKnown RBP15.29■□□□□ 0.04
CCDC88C-211ENST00000556726 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.29■□□□□ 0.04
CCDC88C-211ENST00000556726 DUOX2Q9NRD8 1548 aa15.29■□□□□ 0.04
CCDC88C-211ENST00000556726 GPRASP1Q5JY77 1395 aa15.29■□□□□ 0.04
CCDC88C-211ENST00000556726 FAM69CQ0P6D2 419 aa15.29■□□□□ 0.04
CCDC88C-211ENST00000556726 TMEM57Q8N5G2 664 aa15.29■□□□□ 0.04
CCDC88C-211ENST00000556726 UGGT1Q9NYU2 1555 aa15.28■□□□□ 0.04
CCDC88C-211ENST00000556726 C22orf23Q9BZE7 217 aa15.28■□□□□ 0.04
CCDC88C-211ENST00000556726 TTC37Q6PGP7 1564 aa15.28■□□□□ 0.04
CCDC88C-211ENST00000556726 DDX19BQ9UMR2 479 aa15.28■□□□□ 0.04
CCDC88C-211ENST00000556726 MVPQ14764 893 aaKnown RBP15.27■□□□□ 0.04
CCDC88C-211ENST00000556726 ASXL1Q8IXJ9 1541 aa15.27■□□□□ 0.04
CCDC88C-211ENST00000556726 NUTM2GQ5VZR2 741 aa15.26■□□□□ 0.03
CCDC88C-211ENST00000556726 PNNQ9H307 717 aaKnown RBP15.26■□□□□ 0.03
CCDC88C-211ENST00000556726 C14orf93Q9H972 538 aaKnown RBP15.26■□□□□ 0.03
CCDC88C-211ENST00000556726 KDM2BQ8NHM5 1336 aa15.26■□□□□ 0.03
CCDC88C-211ENST00000556726 KDM5DQ9BY66 1539 aa15.26■□□□□ 0.03
CCDC88C-211ENST00000556726 TRIM27P14373 513 aa15.25■□□□□ 0.03
CCDC88C-211ENST00000556726 EMILIN1Q9Y6C2 1016 aa15.25■□□□□ 0.03
CCDC88C-211ENST00000556726 ATF7IPQ6VMQ6 1270 aa15.24■□□□□ 0.03
CCDC88C-211ENST00000556726 ZRANB1Q9UGI0 708 aa15.24■□□□□ 0.03
CCDC88C-211ENST00000556726 FOXD4L6Q3SYB3 417 aaPredicted RBP15.24■□□□□ 0.03
CCDC88C-211ENST00000556726 FOXD4L3Q6VB84 417 aaPredicted RBP15.24■□□□□ 0.03
CCDC88C-211ENST00000556726 WDR63Q8IWG1 891 aa15.24■□□□□ 0.03
CCDC88C-211ENST00000556726 ZNF428Q96B54 188 aa15.24■□□□□ 0.03
CCDC88C-211ENST00000556726 NCKAP5LQ9HCH0 1330 aa15.23■□□□□ 0.03
CCDC88C-211ENST00000556726 BLMP54132 1417 aaPredicted RBP15.23■□□□□ 0.03
CCDC88C-211ENST00000556726 COG3Q96JB2 828 aa15.23■□□□□ 0.03
CCDC88C-211ENST00000556726 WDR7Q9Y4E6 1490 aa15.22■□□□□ 0.03
CCDC88C-211ENST00000556726 CD109Q6YHK3 1445 aa15.22■□□□□ 0.03
CCDC88C-211ENST00000556726 FAM83GA6ND36 823 aa15.22■□□□□ 0.03
CCDC88C-211ENST00000556726 NAP1L5Q96NT1 182 aaPredicted RBP15.22■□□□□ 0.03
CCDC88C-211ENST00000556726 MIS18AQ9NYP9 233 aa15.22■□□□□ 0.03
CCDC88C-211ENST00000556726 NME9Q86XW9 330 aa15.22■□□□□ 0.03
CCDC88C-211ENST00000556726 NGEFQ8N5V2 710 aa15.21■□□□□ 0.03
CCDC88C-211ENST00000556726 TRIM44Q96DX7 344 aaPredicted RBP15.21■□□□□ 0.02
CCDC88C-211ENST00000556726 FYB1O15117 783 aa15.2■□□□□ 0.02
CCDC88C-211ENST00000556726 ZMYM4Q5VZL5 1548 aa15.2■□□□□ 0.02
CCDC88C-211ENST00000556726 TBC1D2Q9BYX2 928 aa15.2■□□□□ 0.02
CCDC88C-211ENST00000556726 RTF1Q92541 710 aaKnown RBP15.19■□□□□ 0.02
CCDC88C-211ENST00000556726 ABCC2Q92887 1545 aa15.19■□□□□ 0.02
CCDC88C-211ENST00000556726 ANP32BQ92688 251 aaKnown RBP15.19■□□□□ 0.02
CCDC88C-211ENST00000556726 ASXL2Q76L83 1435 aa15.19■□□□□ 0.02
CCDC88C-211ENST00000556726 ATP10AO60312 1499 aa15.19■□□□□ 0.02
CCDC88C-211ENST00000556726 GOLGA6L3A6NEY3 463 aa15.19■□□□□ 0.02
CCDC88C-211ENST00000556726 NGDNQ8NEJ9 315 aaKnown RBP15.18■□□□□ 0.02
CCDC88C-211ENST00000556726 ZNF521Q96K83 1311 aa15.18■□□□□ 0.02
CCDC88C-211ENST00000556726 ARHGEF5Q12774 1597 aa15.17■□□□□ 0.02
CCDC88C-211ENST00000556726 TWISTNBQ3B726 338 aaPredicted RBP15.17■□□□□ 0.02
CCDC88C-211ENST00000556726 SULT6B1Q6IMI4 303 aa15.17■□□□□ 0.02
CCDC88C-211ENST00000556726 MAST1Q9Y2H9 1570 aa15.17■□□□□ 0.02
CCDC88C-211ENST00000556726 SLC26A8Q96RN1 970 aa15.16■□□□□ 0.02
CCDC88C-211ENST00000556726 KIF16BQ96L93 1317 aa15.16■□□□□ 0.02
CCDC88C-211ENST00000556726 PIK3C2GO75747 1445 aa15.16■□□□□ 0.02
CCDC88C-211ENST00000556726 GOLGA6L22H0YM25 854 aa15.16■□□□□ 0.02
CCDC88C-211ENST00000556726 PHACTR3Q96KR7 559 aa15.16■□□□□ 0.02
CCDC88C-211ENST00000556726 AMPHP49418 695 aa15.15■□□□□ 0.02
CCDC88C-211ENST00000556726 TSPYL6Q8N831 410 aa15.15■□□□□ 0.02
CCDC88C-211ENST00000556726 KRT24Q2M2I5 525 aa15.15■□□□□ 0.02
CCDC88C-211ENST00000556726 MCM10Q7L590 875 aa15.15■□□□□ 0.02
CCDC88C-211ENST00000556726 TRIM6-TRIM34B2RNG4 842 aa15.14■□□□□ 0.01
CCDC88C-211ENST00000556726 CALD1Q05682 793 aaKnown RBP15.13■□□□□ 0.01
CCDC88C-211ENST00000556726 L1TD1Q5T7N2 865 aaKnown RBP15.13■□□□□ 0.01
CCDC88C-211ENST00000556726 CDC42BPBQ9Y5S2 1711 aa15.13■□□□□ 0.01
CCDC88C-211ENST00000556726 CASC1Q6TDU7 716 aa15.12■□□□□ 0.01
CCDC88C-211ENST00000556726 SLC52A1Q9NWF4 448 aa15.12■□□□□ 0.01
CCDC88C-211ENST00000556726 CHMP5Q9NZZ3 219 aa15.12■□□□□ 0.01
CCDC88C-211ENST00000556726 GNAI1P63096 354 aa15.12■□□□□ 0.01
CCDC88C-211ENST00000556726 CHD1LQ86WJ1 897 aa15.12■□□□□ 0.01
CCDC88C-211ENST00000556726 RBM33Q96EV2 1170 aaKnown RBP15.12■□□□□ 0.01
CCDC88C-211ENST00000556726 TRPM1Q7Z4N2 1603 aa15.12■□□□□ 0.01
CCDC88C-211ENST00000556726 EIF2AK4Q9P2K8 1649 aaKnown RBP15.12■□□□□ 0.01
CCDC88C-211ENST00000556726 POLR3AO14802 1390 aaPredicted RBP15.12■□□□□ 0.01
CCDC88C-211ENST00000556726 SMARCA5O60264 1052 aaPredicted RBP15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms