RNA–Protein interactions for RNA: ENST00000554928.1

SYNE2-214, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 3

Gene SYNE2, Length 1,048 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-214ENST00000554928 FAM135BQ49AJ0 1406 aa17.85■□□□□ 0.45
SYNE2-214ENST00000554928 ROBO1Q9Y6N7 1651 aa17.84■□□□□ 0.45
SYNE2-214ENST00000554928 SAFB2Q14151 953 aaKnown RBP eCLIP17.84■□□□□ 0.45
SYNE2-214ENST00000554928 NBPF8Q3BBV2 869 aa17.84■□□□□ 0.45
SYNE2-214ENST00000554928 CADPS2Q86UW7 1296 aa17.84■□□□□ 0.45
SYNE2-214ENST00000554928 PRAM1Q96QH2 718 aa17.84■□□□□ 0.45
SYNE2-214ENST00000554928 DCCP43146 1447 aa17.83■□□□□ 0.45
SYNE2-214ENST00000554928 SIRT1Q96EB6 747 aa17.81■□□□□ 0.44
SYNE2-214ENST00000554928 DLC1Q96QB1 1528 aa17.81■□□□□ 0.44
SYNE2-214ENST00000554928 BRINP3Q76B58 766 aa17.8■□□□□ 0.44
SYNE2-214ENST00000554928 TONSLQ96HA7 1378 aa17.79■□□□□ 0.44
SYNE2-214ENST00000554928 NUTM2FA1L443 756 aa17.79■□□□□ 0.44
SYNE2-214ENST00000554928 C1orf167Q5SNV9 1468 aa17.79■□□□□ 0.44
SYNE2-214ENST00000554928 KIAA1210Q9ULL0 1709 aa17.78■□□□□ 0.44
SYNE2-214ENST00000554928 DDX17Q92841 729 aaKnown RBP17.77■□□□□ 0.44
SYNE2-214ENST00000554928 ORAI2Q96SN7 254 aa17.77■□□□□ 0.44
SYNE2-214ENST00000554928 POGKQ9P215 609 aa17.77■□□□□ 0.44
SYNE2-214ENST00000554928 CDC42BPGQ6DT37 1551 aa17.77■□□□□ 0.44
SYNE2-214ENST00000554928 HIRIP3Q9BW71 556 aaPredicted RBP17.76■□□□□ 0.43
SYNE2-214ENST00000554928 TRPM1Q7Z4N2 1603 aa17.76■□□□□ 0.43
SYNE2-214ENST00000554928 MINK1Q8N4C8 1332 aaPredicted RBP17.75■□□□□ 0.43
SYNE2-214ENST00000554928 ARHGEF28Q8N1W1 1705 aaKnown RBP17.75■□□□□ 0.43
SYNE2-214ENST00000554928 CCER1Q8TC90 406 aaPredicted RBP17.73■□□□□ 0.43
SYNE2-214ENST00000554928 ROCK2O75116 1388 aaKnown RBP17.71■□□□□ 0.43
SYNE2-214ENST00000554928 FMN2Q9NZ56 1722 aa17.71■□□□□ 0.43
SYNE2-214ENST00000554928 COL16A1Q07092 1604 aaPredicted RBP17.71■□□□□ 0.43
SYNE2-214ENST00000554928 AHDC1Q5TGY3 1603 aaPredicted RBP17.71■□□□□ 0.43
SYNE2-214ENST00000554928 PHLPP1O60346 1717 aa17.7■□□□□ 0.42
SYNE2-214ENST00000554928 ADGRB2O60241 1585 aa17.7■□□□□ 0.42
SYNE2-214ENST00000554928 GPRASP1Q5JY77 1395 aa17.69■□□□□ 0.42
SYNE2-214ENST00000554928 ESCO1Q5FWF5 840 aa17.69■□□□□ 0.42
SYNE2-214ENST00000554928 PRR36Q9H6K5 1346 aa17.69■□□□□ 0.42
SYNE2-214ENST00000554928 CLSPNQ9HAW4 1339 aa17.69■□□□□ 0.42
SYNE2-214ENST00000554928 RALGAPBQ86X10 1494 aa17.68■□□□□ 0.42
SYNE2-214ENST00000554928 NHSL1Q5SYE7 1610 aa17.67■□□□□ 0.42
SYNE2-214ENST00000554928 USP32Q8NFA0 1604 aa17.67■□□□□ 0.42
SYNE2-214ENST00000554928 WASLO00401 505 aaPredicted RBP17.66■□□□□ 0.42
SYNE2-214ENST00000554928 CENPJQ9HC77 1338 aaPredicted RBP17.66■□□□□ 0.42
SYNE2-214ENST00000554928 XPCQ01831 940 aaPredicted RBP17.65■□□□□ 0.42
SYNE2-214ENST00000554928 CARD11Q9BXL7 1154 aa17.64■□□□□ 0.41
SYNE2-214ENST00000554928 FOXO3O43524 673 aa17.63■□□□□ 0.41
SYNE2-214ENST00000554928 CNKSR2Q8WXI2 1034 aa17.63■□□□□ 0.41
SYNE2-214ENST00000554928 CDK19Q9BWU1 502 aa17.63■□□□□ 0.41
SYNE2-214ENST00000554928 RGPD8O14715 1765 aaPredicted RBP17.63■□□□□ 0.41
SYNE2-214ENST00000554928 MED1Q15648 1581 aaPredicted RBP17.62■□□□□ 0.41
SYNE2-214ENST00000554928 PMFBP1Q8TBY8 1022 aa17.62■□□□□ 0.41
SYNE2-214ENST00000554928 SOS2Q07890 1332 aaPredicted RBP17.62■□□□□ 0.41
SYNE2-214ENST00000554928 JCADQ9P266 1359 aa17.62■□□□□ 0.41
SYNE2-214ENST00000554928 TULP4Q9NRJ4 1543 aa17.62■□□□□ 0.41
SYNE2-214ENST00000554928 PHF8Q9UPP1 1060 aa17.61■□□□□ 0.41
SYNE2-214ENST00000554928 ANKARQ7Z5J8 1434 aa17.61■□□□□ 0.41
SYNE2-214ENST00000554928 PXDNQ92626 1479 aa17.61■□□□□ 0.41
SYNE2-214ENST00000554928 QRICH2Q9H0J4 1663 aa17.61■□□□□ 0.41
SYNE2-214ENST00000554928 ATP7BP35670 1465 aa17.6■□□□□ 0.41
SYNE2-214ENST00000554928 NUDT16Q96DE0 195 aaKnown RBP17.59■□□□□ 0.41
SYNE2-214ENST00000554928 CABP2Q9NPB3 220 aa17.59■□□□□ 0.41
SYNE2-214ENST00000554928 LRP6O75581 1613 aa17.58■□□□□ 0.41
SYNE2-214ENST00000554928 PNPLA6Q8IY17 1366 aa17.58■□□□□ 0.4
SYNE2-214ENST00000554928 NPHP3Q7Z494 1330 aa17.58■□□□□ 0.4
SYNE2-214ENST00000554928 HOXD11P31277 338 aaPredicted RBP17.58■□□□□ 0.4
SYNE2-214ENST00000554928 TIMELESSQ9UNS1 1208 aa17.58■□□□□ 0.4
SYNE2-214ENST00000554928 DISP3Q9P2K9 1392 aa17.57■□□□□ 0.4
SYNE2-214ENST00000554928 LRRC59Q96AG4 307 aaKnown RBP17.56■□□□□ 0.4
SYNE2-214ENST00000554928 EIF3AQ14152 1382 aaKnown RBP17.55■□□□□ 0.4
SYNE2-214ENST00000554928 KIF1AQ12756 1690 aa17.55■□□□□ 0.4
SYNE2-214ENST00000554928 KRT28Q7Z3Y7 464 aa17.55■□□□□ 0.4
SYNE2-214ENST00000554928 SHPRHQ149N8 1683 aa17.55■□□□□ 0.4
SYNE2-214ENST00000554928 NUTM2BA6NNL0 878 aaPredicted RBP17.54■□□□□ 0.4
SYNE2-214ENST00000554928 NUTM2EB1AL46 878 aaPredicted RBP17.54■□□□□ 0.4
SYNE2-214ENST00000554928 SRPK2P78362 688 aaKnown RBP17.54■□□□□ 0.4
SYNE2-214ENST00000554928 NUTM2AQ8IVF1 878 aaPredicted RBP17.54■□□□□ 0.4
SYNE2-214ENST00000554928 ST20-MTHFSA0A0A6YYL1 179 aa17.52■□□□□ 0.4
SYNE2-214ENST00000554928 TOPAZ1Q8N9V7 1692 aa17.52■□□□□ 0.39
SYNE2-214ENST00000554928 SPATA31A6Q5VVP1 1343 aa17.51■□□□□ 0.39
SYNE2-214ENST00000554928 SPATA31A3Q5VYP0 1347 aa17.51■□□□□ 0.39
SYNE2-214ENST00000554928 TESK2Q96S53 571 aa17.51■□□□□ 0.39
SYNE2-214ENST00000554928 RGS17Q9UGC6 210 aaPredicted RBP17.51■□□□□ 0.39
SYNE2-214ENST00000554928 CCDC61Q9Y6R9 512 aa17.51■□□□□ 0.39
SYNE2-214ENST00000554928 EVC2Q86UK5 1308 aa17.5■□□□□ 0.39
SYNE2-214ENST00000554928 PSME1Q06323 249 aa17.5■□□□□ 0.39
SYNE2-214ENST00000554928 USP47Q96K76 1375 aa17.5■□□□□ 0.39
SYNE2-214ENST00000554928 PPIP5K1Q6PFW1 1433 aa17.49■□□□□ 0.39
SYNE2-214ENST00000554928 NGDNQ8NEJ9 315 aaKnown RBP17.49■□□□□ 0.39
SYNE2-214ENST00000554928 SBNO2Q9Y2G9 1366 aa17.49■□□□□ 0.39
SYNE2-214ENST00000554928 ACEP12821 1306 aa17.48■□□□□ 0.39
SYNE2-214ENST00000554928 PLEKHG3A1L390 1219 aa17.48■□□□□ 0.39
SYNE2-214ENST00000554928 PLEKHG5O94827 1062 aa17.48■□□□□ 0.39
SYNE2-214ENST00000554928 CABP1Q9NZU7 370 aa17.48■□□□□ 0.39
SYNE2-214ENST00000554928 TNS3Q68CZ2 1445 aa17.47■□□□□ 0.39
SYNE2-214ENST00000554928 TRPM3Q9HCF6 1732 aaPredicted RBP17.47■□□□□ 0.39
SYNE2-214ENST00000554928 ILDR2Q71H61 639 aa17.47■□□□□ 0.39
SYNE2-214ENST00000554928 RNF216Q9NWF9 866 aaPredicted RBP17.47■□□□□ 0.39
SYNE2-214ENST00000554928 SBNO1A3KN83 1393 aa17.47■□□□□ 0.39
SYNE2-214ENST00000554928 POLR3AO14802 1390 aaPredicted RBP17.47■□□□□ 0.39
SYNE2-214ENST00000554928 ITSN1Q15811 1721 aa17.46■□□□□ 0.39
SYNE2-214ENST00000554928 COL22A1Q8NFW1 1626 aaPredicted RBP17.46■□□□□ 0.39
SYNE2-214ENST00000554928 ADAMTS2O95450 1211 aa17.45■□□□□ 0.38
SYNE2-214ENST00000554928 LMOD2Q6P5Q4 547 aa17.45■□□□□ 0.38
SYNE2-214ENST00000554928 CABLES1Q8TDN4 633 aa17.45■□□□□ 0.38
SYNE2-214ENST00000554928 MEX3CQ5U5Q3 659 aaKnown RBP17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms