RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 PRAM1Q96QH2 718 aa16.81■□□□□ 0.28
CCDC88C-208ENST00000554165 PHLPP1O60346 1717 aa16.81■□□□□ 0.28
CCDC88C-208ENST00000554165 KNDC1Q76NI1 1749 aa16.8■□□□□ 0.28
CCDC88C-208ENST00000554165 LAMC1P11047 1609 aa16.8■□□□□ 0.28
CCDC88C-208ENST00000554165 MED1Q15648 1581 aaPredicted RBP16.8■□□□□ 0.28
CCDC88C-208ENST00000554165 NBPF1Q3BBV0 1214 aa16.79■□□□□ 0.28
CCDC88C-208ENST00000554165 STAC3Q96MF2 364 aa16.79■□□□□ 0.28
CCDC88C-208ENST00000554165 SIRT1Q96EB6 747 aa16.78■□□□□ 0.28
CCDC88C-208ENST00000554165 COL16A1Q07092 1604 aaPredicted RBP16.78■□□□□ 0.28
CCDC88C-208ENST00000554165 ILDR2Q71H61 639 aa16.77■□□□□ 0.28
CCDC88C-208ENST00000554165 PCGF6Q9BYE7 350 aa16.76■□□□□ 0.27
CCDC88C-208ENST00000554165 POGKQ9P215 609 aa16.76■□□□□ 0.27
CCDC88C-208ENST00000554165 AHDC1Q5TGY3 1603 aaPredicted RBP16.76■□□□□ 0.27
CCDC88C-208ENST00000554165 CDC42BPGQ6DT37 1551 aa16.76■□□□□ 0.27
CCDC88C-208ENST00000554165 HIRIP3Q9BW71 556 aaPredicted RBP16.75■□□□□ 0.27
CCDC88C-208ENST00000554165 ESCO1Q5FWF5 840 aa16.74■□□□□ 0.27
CCDC88C-208ENST00000554165 MINK1Q8N4C8 1332 aaPredicted RBP16.73■□□□□ 0.27
CCDC88C-208ENST00000554165 DLC1Q96QB1 1528 aa16.73■□□□□ 0.27
CCDC88C-208ENST00000554165 JCADQ9P266 1359 aa16.73■□□□□ 0.27
CCDC88C-208ENST00000554165 NHSL1Q5SYE7 1610 aa16.71■□□□□ 0.27
CCDC88C-208ENST00000554165 XPCQ01831 940 aaPredicted RBP16.71■□□□□ 0.27
CCDC88C-208ENST00000554165 FOXO3O43524 673 aa16.7■□□□□ 0.26
CCDC88C-208ENST00000554165 NBPF8Q3BBV2 869 aa16.7■□□□□ 0.26
CCDC88C-208ENST00000554165 RGS17Q9UGC6 210 aaPredicted RBP16.69■□□□□ 0.26
CCDC88C-208ENST00000554165 FMN2Q9NZ56 1722 aa16.69■□□□□ 0.26
CCDC88C-208ENST00000554165 ARHGEF28Q8N1W1 1705 aaKnown RBP16.67■□□□□ 0.26
CCDC88C-208ENST00000554165 KIAA1210Q9ULL0 1709 aa16.67■□□□□ 0.26
CCDC88C-208ENST00000554165 LRP6O75581 1613 aa16.67■□□□□ 0.26
CCDC88C-208ENST00000554165 NUTM2BA6NNL0 878 aaPredicted RBP16.67■□□□□ 0.26
CCDC88C-208ENST00000554165 NUTM2EB1AL46 878 aaPredicted RBP16.67■□□□□ 0.26
CCDC88C-208ENST00000554165 NUTM2AQ8IVF1 878 aaPredicted RBP16.67■□□□□ 0.26
CCDC88C-208ENST00000554165 SOS2Q07890 1332 aaPredicted RBP16.67■□□□□ 0.26
CCDC88C-208ENST00000554165 RGPD8O14715 1765 aaPredicted RBP16.66■□□□□ 0.26
CCDC88C-208ENST00000554165 LRRC59Q96AG4 307 aaKnown RBP16.66■□□□□ 0.26
CCDC88C-208ENST00000554165 PRR36Q9H6K5 1346 aa16.66■□□□□ 0.26
CCDC88C-208ENST00000554165 PNPLA6Q8IY17 1366 aa16.64■□□□□ 0.26
CCDC88C-208ENST00000554165 WASLO00401 505 aaPredicted RBP16.64■□□□□ 0.25
CCDC88C-208ENST00000554165 SHPRHQ149N8 1683 aa16.64■□□□□ 0.25
CCDC88C-208ENST00000554165 ADGRB2O60241 1585 aa16.64■□□□□ 0.25
CCDC88C-208ENST00000554165 USP32Q8NFA0 1604 aa16.63■□□□□ 0.25
CCDC88C-208ENST00000554165 PXDNQ92626 1479 aa16.63■□□□□ 0.25
CCDC88C-208ENST00000554165 PMFBP1Q8TBY8 1022 aa16.63■□□□□ 0.25
CCDC88C-208ENST00000554165 PHF8Q9UPP1 1060 aa16.63■□□□□ 0.25
CCDC88C-208ENST00000554165 SPATA31A6Q5VVP1 1343 aa16.63■□□□□ 0.25
CCDC88C-208ENST00000554165 NPHP3Q7Z494 1330 aa16.63■□□□□ 0.25
CCDC88C-208ENST00000554165 TONSLQ96HA7 1378 aa16.63■□□□□ 0.25
CCDC88C-208ENST00000554165 TRPM1Q7Z4N2 1603 aa16.62■□□□□ 0.25
CCDC88C-208ENST00000554165 POTEAQ6S8J7 498 aa16.61■□□□□ 0.25
CCDC88C-208ENST00000554165 MEX3CQ5U5Q3 659 aaKnown RBP16.6■□□□□ 0.25
CCDC88C-208ENST00000554165 KRT28Q7Z3Y7 464 aa16.6■□□□□ 0.25
CCDC88C-208ENST00000554165 CDK19Q9BWU1 502 aa16.6■□□□□ 0.25
CCDC88C-208ENST00000554165 ROCK2O75116 1388 aaKnown RBP16.6■□□□□ 0.25
CCDC88C-208ENST00000554165 CENPJQ9HC77 1338 aaPredicted RBP16.59■□□□□ 0.25
CCDC88C-208ENST00000554165 ANKARQ7Z5J8 1434 aa16.59■□□□□ 0.25
CCDC88C-208ENST00000554165 NUDT16Q96DE0 195 aaKnown RBP16.58■□□□□ 0.24
CCDC88C-208ENST00000554165 TULP4Q9NRJ4 1543 aa16.58■□□□□ 0.24
CCDC88C-208ENST00000554165 KIF1AQ12756 1690 aa16.57■□□□□ 0.24
CCDC88C-208ENST00000554165 PLEKHG5O94827 1062 aa16.57■□□□□ 0.24
CCDC88C-208ENST00000554165 ADAMTS2O95450 1211 aa16.57■□□□□ 0.24
CCDC88C-208ENST00000554165 SPATA31A3Q5VYP0 1347 aa16.56■□□□□ 0.24
CCDC88C-208ENST00000554165 PSME1Q06323 249 aa16.56■□□□□ 0.24
CCDC88C-208ENST00000554165 CABP2Q9NPB3 220 aa16.55■□□□□ 0.24
CCDC88C-208ENST00000554165 ATP7BP35670 1465 aa16.54■□□□□ 0.24
CCDC88C-208ENST00000554165 GPRASP1Q5JY77 1395 aa16.54■□□□□ 0.24
CCDC88C-208ENST00000554165 C8orf37Q96NL8 207 aa16.54■□□□□ 0.24
CCDC88C-208ENST00000554165 EIF3AQ14152 1382 aaKnown RBP16.53■□□□□ 0.24
CCDC88C-208ENST00000554165 QRICH2Q9H0J4 1663 aa16.53■□□□□ 0.24
CCDC88C-208ENST00000554165 LMOD2Q6P5Q4 547 aa16.53■□□□□ 0.24
CCDC88C-208ENST00000554165 CABLES1Q8TDN4 633 aa16.53■□□□□ 0.24
CCDC88C-208ENST00000554165 CARD11Q9BXL7 1154 aa16.53■□□□□ 0.24
CCDC88C-208ENST00000554165 SRPK2P78362 688 aaKnown RBP16.52■□□□□ 0.24
CCDC88C-208ENST00000554165 NGDNQ8NEJ9 315 aaKnown RBP16.52■□□□□ 0.24
CCDC88C-208ENST00000554165 RALGAPBQ86X10 1494 aa16.52■□□□□ 0.23
CCDC88C-208ENST00000554165 AFF2P51816 1311 aa16.51■□□□□ 0.23
CCDC88C-208ENST00000554165 COL22A1Q8NFW1 1626 aaPredicted RBP16.5■□□□□ 0.23
CCDC88C-208ENST00000554165 TNS3Q68CZ2 1445 aa16.5■□□□□ 0.23
CCDC88C-208ENST00000554165 SBNO1A3KN83 1393 aa16.5■□□□□ 0.23
CCDC88C-208ENST00000554165 SOCS7O14512 581 aa16.49■□□□□ 0.23
CCDC88C-208ENST00000554165 CCER1Q8TC90 406 aaPredicted RBP16.49■□□□□ 0.23
CCDC88C-208ENST00000554165 NGLY1Q96IV0 654 aa16.49■□□□□ 0.23
CCDC88C-208ENST00000554165 CCDC61Q9Y6R9 512 aa16.49■□□□□ 0.23
CCDC88C-208ENST00000554165 ACEP12821 1306 aa16.48■□□□□ 0.23
CCDC88C-208ENST00000554165 PLEKHG3A1L390 1219 aa16.47■□□□□ 0.23
CCDC88C-208ENST00000554165 PAK3O75914 559 aaPredicted RBP16.47■□□□□ 0.23
CCDC88C-208ENST00000554165 TRPM3Q9HCF6 1732 aaPredicted RBP16.47■□□□□ 0.23
CCDC88C-208ENST00000554165 TOPAZ1Q8N9V7 1692 aa16.46■□□□□ 0.23
CCDC88C-208ENST00000554165 ZNF772Q68DY9 489 aaPredicted RBP16.46■□□□□ 0.23
CCDC88C-208ENST00000554165 CABP1Q9NZU7 370 aa16.46■□□□□ 0.23
CCDC88C-208ENST00000554165 EVC2Q86UK5 1308 aa16.45■□□□□ 0.22
CCDC88C-208ENST00000554165 PPIP5K1Q6PFW1 1433 aa16.45■□□□□ 0.22
CCDC88C-208ENST00000554165 POLR3AO14802 1390 aaPredicted RBP16.45■□□□□ 0.22
CCDC88C-208ENST00000554165 ITSN1Q15811 1721 aa16.45■□□□□ 0.22
CCDC88C-208ENST00000554165 CLSPNQ9HAW4 1339 aa16.45■□□□□ 0.22
CCDC88C-208ENST00000554165 NUTM2GQ5VZR2 741 aa16.44■□□□□ 0.22
CCDC88C-208ENST00000554165 ARHGEF10O15013 1369 aa16.43■□□□□ 0.22
CCDC88C-208ENST00000554165 QTRT2Q9H974 415 aaKnown RBP16.43■□□□□ 0.22
CCDC88C-208ENST00000554165 ALS2Q96Q42 1657 aa16.43■□□□□ 0.22
CCDC88C-208ENST00000554165 ST20-MTHFSA0A0A6YYL1 179 aa16.42■□□□□ 0.22
CCDC88C-208ENST00000554165 HAP1P54257 671 aaPredicted RBP16.42■□□□□ 0.22
CCDC88C-208ENST00000554165 FNBP4Q8N3X1 1017 aaPredicted RBP16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms