RNA–Protein interactions for RNA: ENST00000553693.5

SCFD1-210, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 490 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-210ENST00000553693 TOR4AQ9NXH8 423 aa10.07□□□□□ -0.8
SCFD1-210ENST00000553693 GCGRP47871 477 aa10.05□□□□□ -0.8
SCFD1-210ENST00000553693 SMCPP49901 116 aaPredicted RBP10.05□□□□□ -0.8
SCFD1-210ENST00000553693 BCANQ96GW7 911 aa10.05□□□□□ -0.8
SCFD1-210ENST00000553693 GPCPD1Q9NPB8 672 aa10.05□□□□□ -0.8
SCFD1-210ENST00000553693 TERTO14746 1132 aaKnown RBP10.04□□□□□ -0.8
SCFD1-210ENST00000553693 CTC1Q2NKJ3 1217 aa10.03□□□□□ -0.8
SCFD1-210ENST00000553693 ADH1BP00325 375 aa10.02□□□□□ -0.81
SCFD1-210ENST00000553693 CD46P15529 392 aa10.02□□□□□ -0.81
SCFD1-210ENST00000553693 ATP6V1AP38606 617 aa10.02□□□□□ -0.81
SCFD1-210ENST00000553693 FUT2Q10981 343 aa10.02□□□□□ -0.81
SCFD1-210ENST00000553693 GRIPAP1Q4V328 841 aa10.02□□□□□ -0.81
SCFD1-210ENST00000553693 PUS10Q3MIT2 529 aaKnown RBP10.01□□□□□ -0.81
SCFD1-210ENST00000553693 SNRPBP14678 240 aaKnown RBP10□□□□□ -0.81
SCFD1-210ENST00000553693 LORP23490 312 aaPredicted RBP10□□□□□ -0.81
SCFD1-210ENST00000553693 TTLL12Q14166 644 aaPredicted RBP9.99□□□□□ -0.81
SCFD1-210ENST00000553693 SUZ12Q15022 739 aaKnown RBP9.99□□□□□ -0.81
SCFD1-210ENST00000553693 AMHR2Q16671 573 aa9.99□□□□□ -0.81
SCFD1-210ENST00000553693 MORN1Q5T089 497 aa9.99□□□□□ -0.81
SCFD1-210ENST00000553693 SCUBE3Q8IX30 993 aa9.99□□□□□ -0.81
SCFD1-210ENST00000553693 SLC6A16Q9GZN6 736 aa9.99□□□□□ -0.81
SCFD1-210ENST00000553693 FAM217BQ9NTX9 383 aaPredicted RBP9.99□□□□□ -0.81
SCFD1-210ENST00000553693 USP46P62068 366 aa9.98□□□□□ -0.81
SCFD1-210ENST00000553693 AK7Q96M32 723 aa9.97□□□□□ -0.81
SCFD1-210ENST00000553693 KDM4AO75164 1064 aa9.96□□□□□ -0.82
SCFD1-210ENST00000553693 CYP4X1Q8N118 509 aa9.95□□□□□ -0.82
SCFD1-210ENST00000553693 SPSB2Q99619 263 aa9.95□□□□□ -0.82
SCFD1-210ENST00000553693 FMNL1O95466 1100 aaPredicted RBP9.94□□□□□ -0.82
SCFD1-210ENST00000553693 Q3C1V9 767 aa9.94□□□□□ -0.82
SCFD1-210ENST00000553693 ATP13A2Q9NQ11 1180 aa9.94□□□□□ -0.82
SCFD1-210ENST00000553693 SLC27A5Q9Y2P5 690 aa9.94□□□□□ -0.82
SCFD1-210ENST00000553693 SALL2Q9Y467 1007 aaPredicted RBP9.94□□□□□ -0.82
SCFD1-210ENST00000553693 FAM181BA6NEQ2 426 aa9.93□□□□□ -0.82
SCFD1-210ENST00000553693 RPIAP49247 311 aa9.92□□□□□ -0.82
SCFD1-210ENST00000553693 GIGYF2Q6Y7W6 1299 aaKnown RBP9.92□□□□□ -0.82
SCFD1-210ENST00000553693 NUTM1Q86Y26 1132 aa9.92□□□□□ -0.82
SCFD1-210ENST00000553693 TRIM47Q96LD4 638 aa9.92□□□□□ -0.82
SCFD1-210ENST00000553693 TRIM66O15016 1216 aa9.91□□□□□ -0.82
SCFD1-210ENST00000553693 SSTR3P32745 418 aaPredicted RBP9.91□□□□□ -0.82
SCFD1-210ENST00000553693 THAP11Q96EK4 314 aa9.91□□□□□ -0.82
SCFD1-210ENST00000553693 REPIN1Q9BWE0 567 aaKnown RBP9.91□□□□□ -0.82
SCFD1-210ENST00000553693 HOXA2O43364 376 aa9.9□□□□□ -0.82
SCFD1-210ENST00000553693 BRICD5Q6PL45 260 aa9.89□□□□□ -0.83
SCFD1-210ENST00000553693 PARP9Q8IXQ6 854 aa9.89□□□□□ -0.83
SCFD1-210ENST00000553693 ZSCAN1Q8NBB4 408 aa9.88□□□□□ -0.83
SCFD1-210ENST00000553693 MSS51Q4VC12 460 aa9.87□□□□□ -0.83
SCFD1-210ENST00000553693 RNF19BQ6ZMZ0 732 aa9.87□□□□□ -0.83
SCFD1-210ENST00000553693 SMPD1P17405 629 aa9.86□□□□□ -0.83
SCFD1-210ENST00000553693 GMPRP36959 345 aa9.86□□□□□ -0.83
SCFD1-210ENST00000553693 SLC24A3Q9HC58 644 aa9.86□□□□□ -0.83
SCFD1-210ENST00000553693 CD2BP2O95400 341 aaKnown RBP9.85□□□□□ -0.83
SCFD1-210ENST00000553693 FAM160A2Q8N612 972 aaPredicted RBP9.85□□□□□ -0.83
SCFD1-210ENST00000553693 SENP2Q9HC62 589 aa9.85□□□□□ -0.83
SCFD1-210ENST00000553693 PDE4DQ08499 809 aa9.84□□□□□ -0.83
SCFD1-210ENST00000553693 USB1Q9BQ65 265 aaKnown RBP9.84□□□□□ -0.83
SCFD1-210ENST00000553693 TTC24A2A3L6 582 aaPredicted RBP9.83□□□□□ -0.84
SCFD1-210ENST00000553693 DIXDC1Q155Q3 683 aa9.83□□□□□ -0.84
SCFD1-210ENST00000553693 HLA-CQ95604 372 aa9.83□□□□□ -0.84
SCFD1-210ENST00000553693 BEGAINQ9BUH8 593 aa9.83□□□□□ -0.84
SCFD1-210ENST00000553693 FCF1Q9Y324 198 aaKnown RBP9.83□□□□□ -0.84
SCFD1-210ENST00000553693 SPIRE2Q8WWL2 714 aa9.82□□□□□ -0.84
SCFD1-210ENST00000553693 PRDM9Q9NQV7 894 aa9.82□□□□□ -0.84
SCFD1-210ENST00000553693 FDX1P10109 184 aa9.81□□□□□ -0.84
SCFD1-210ENST00000553693 GUCA2AQ02747 115 aa9.8□□□□□ -0.84
SCFD1-210ENST00000553693 SLC16A10Q8TF71 515 aa9.8□□□□□ -0.84
SCFD1-210ENST00000553693 MS4A1P11836 297 aa9.79□□□□□ -0.84
SCFD1-210ENST00000553693 MMP16P51512 607 aa9.79□□□□□ -0.84
SCFD1-210ENST00000553693 KIFC2Q96AC6 838 aa9.79□□□□□ -0.84
SCFD1-210ENST00000553693 GJA5P36382 358 aa9.78□□□□□ -0.84
SCFD1-210ENST00000553693 RETREG3Q86VR2 466 aa9.78□□□□□ -0.84
SCFD1-210ENST00000553693 SNIP1Q8TAD8 396 aaKnown RBP9.78□□□□□ -0.84
SCFD1-210ENST00000553693 TBC1D2Q9BYX2 928 aa9.78□□□□□ -0.84
SCFD1-210ENST00000553693 NXF1Q9UBU9 619 aaKnown RBP9.78□□□□□ -0.84
SCFD1-210ENST00000553693 J3QL48 77 aa9.77□□□□□ -0.85
SCFD1-210ENST00000553693 DXOO77932 396 aaKnown RBP9.77□□□□□ -0.85
SCFD1-210ENST00000553693 MOXD2PA6NHM9 499 aa9.76□□□□□ -0.85
SCFD1-210ENST00000553693 C6orf229H3BNL8 230 aa9.76□□□□□ -0.85
SCFD1-210ENST00000553693 WNT7AO00755 349 aa9.76□□□□□ -0.85
SCFD1-210ENST00000553693 NDUFV2P19404 249 aa9.75□□□□□ -0.85
SCFD1-210ENST00000553693 PCDHGC3Q9UN70 934 aa9.75□□□□□ -0.85
SCFD1-210ENST00000553693 ZBTB24O43167 697 aaPredicted RBP9.74□□□□□ -0.85
SCFD1-210ENST00000553693 JUNDP17535 347 aa9.74□□□□□ -0.85
SCFD1-210ENST00000553693 HPS1Q92902 700 aa9.74□□□□□ -0.85
SCFD1-210ENST00000553693 IRF7Q92985 503 aa9.74□□□□□ -0.85
SCFD1-210ENST00000553693 SPDYE5A6NIY4 337 aa9.73□□□□□ -0.85
SCFD1-210ENST00000553693 RSBN1LQ6PCB5 846 aaPredicted RBP9.73□□□□□ -0.85
SCFD1-210ENST00000553693 SYMPKQ92797 1274 aaKnown RBP9.73□□□□□ -0.85
SCFD1-210ENST00000553693 MTMR2Q13614 643 aa9.72□□□□□ -0.85
SCFD1-210ENST00000553693 ERBB4Q15303 1308 aa9.72□□□□□ -0.85
SCFD1-210ENST00000553693 SPTLC1O15269 473 aa9.71□□□□□ -0.86
SCFD1-210ENST00000553693 GSK3AP49840 483 aa9.71□□□□□ -0.86
SCFD1-210ENST00000553693 NPAS3Q8IXF0 933 aa9.71□□□□□ -0.86
SCFD1-210ENST00000553693 VEGFBP49765 207 aa9.7□□□□□ -0.86
SCFD1-210ENST00000553693 KCTD17Q8N5Z5 321 aa9.7□□□□□ -0.86
SCFD1-210ENST00000553693 MRGPRX2Q96LB1 330 aa9.7□□□□□ -0.86
SCFD1-210ENST00000553693 H3BM21 787 aa9.69□□□□□ -0.86
SCFD1-210ENST00000553693 RIC3Q7Z5B4 369 aa9.69□□□□□ -0.86
SCFD1-210ENST00000553693 PRPF38BQ5VTL8 546 aaKnown RBP9.68□□□□□ -0.86
SCFD1-210ENST00000553693 MYSM1Q5VVJ2 828 aa9.68□□□□□ -0.86
SCFD1-210ENST00000553693 CCDC24Q8N4L8 307 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 100.5 ms