RNA–Protein interactions for RNA: ENST00000553529.5

SHMT2-206, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 562 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-206ENST00000553529 C14orf93Q9H972 538 aaKnown RBP26.82■■□□□ 1.88
SHMT2-206ENST00000553529 ACIN1Q9UKV3 1341 aaKnown RBP26.81■■□□□ 1.88
SHMT2-206ENST00000553529 DHX57Q6P158 1386 aaKnown RBP26.81■■□□□ 1.88
SHMT2-206ENST00000553529 CDC42BPGQ6DT37 1551 aa26.8■■□□□ 1.88
SHMT2-206ENST00000553529 HRCP23327 699 aa26.8■■□□□ 1.88
SHMT2-206ENST00000553529 ABCC11Q96J66 1382 aa26.8■■□□□ 1.88
SHMT2-206ENST00000553529 DCAF11Q8TEB1 546 aa26.78■■□□□ 1.88
SHMT2-206ENST00000553529 ADGRB1O14514 1584 aa26.78■■□□□ 1.88
SHMT2-206ENST00000553529 LAMC1P11047 1609 aa26.78■■□□□ 1.88
SHMT2-206ENST00000553529 NUTM2BA6NNL0 878 aaPredicted RBP26.77■■□□□ 1.88
SHMT2-206ENST00000553529 NUTM2EB1AL46 878 aaPredicted RBP26.77■■□□□ 1.88
SHMT2-206ENST00000553529 SAFB2Q14151 953 aaKnown RBP eCLIP26.77■■□□□ 1.88
SHMT2-206ENST00000553529 NUTM2AQ8IVF1 878 aaPredicted RBP26.77■■□□□ 1.88
SHMT2-206ENST00000553529 FMN2Q9NZ56 1722 aa26.74■■□□□ 1.87
SHMT2-206ENST00000553529 XPCQ01831 940 aaPredicted RBP26.73■■□□□ 1.87
SHMT2-206ENST00000553529 PNPLA6Q8IY17 1366 aa26.72■■□□□ 1.87
SHMT2-206ENST00000553529 RGPD8O14715 1765 aaPredicted RBP26.71■■□□□ 1.87
SHMT2-206ENST00000553529 SPATA31A6Q5VVP1 1343 aa26.7■■□□□ 1.87
SHMT2-206ENST00000553529 ESCO1Q5FWF5 840 aa26.7■■□□□ 1.86
SHMT2-206ENST00000553529 PRAM1Q96QH2 718 aa26.7■■□□□ 1.86
SHMT2-206ENST00000553529 TRAK1Q9UPV9 953 aa26.68■■□□□ 1.86
SHMT2-206ENST00000553529 MEX3CQ5U5Q3 659 aaKnown RBP26.67■■□□□ 1.86
SHMT2-206ENST00000553529 SOS2Q07890 1332 aaPredicted RBP26.66■■□□□ 1.86
SHMT2-206ENST00000553529 PXDNQ92626 1479 aa26.65■■□□□ 1.86
SHMT2-206ENST00000553529 USP32Q8NFA0 1604 aa26.65■■□□□ 1.86
SHMT2-206ENST00000553529 FOXO3O43524 673 aa26.64■■□□□ 1.86
SHMT2-206ENST00000553529 LRRC59Q96AG4 307 aaKnown RBP26.64■■□□□ 1.86
SHMT2-206ENST00000553529 HIRIP3Q9BW71 556 aaPredicted RBP26.64■■□□□ 1.86
SHMT2-206ENST00000553529 DLC1Q96QB1 1528 aa26.64■■□□□ 1.85
SHMT2-206ENST00000553529 SIN3AQ96ST3 1273 aa26.62■■□□□ 1.85
SHMT2-206ENST00000553529 ARHGEF28Q8N1W1 1705 aaKnown RBP26.61■■□□□ 1.85
SHMT2-206ENST00000553529 ADAMTS2O95450 1211 aa26.59■■□□□ 1.85
SHMT2-206ENST00000553529 SIRT1Q96EB6 747 aa26.59■■□□□ 1.85
SHMT2-206ENST00000553529 MINK1Q8N4C8 1332 aaPredicted RBP26.59■■□□□ 1.85
SHMT2-206ENST00000553529 POGKQ9P215 609 aa26.58■■□□□ 1.85
SHMT2-206ENST00000553529 C8orf37Q96NL8 207 aa26.57■■□□□ 1.84
SHMT2-206ENST00000553529 ADGRB2O60241 1585 aa26.56■■□□□ 1.84
SHMT2-206ENST00000553529 AFF2P51816 1311 aa26.56■■□□□ 1.84
SHMT2-206ENST00000553529 COL22A1Q8NFW1 1626 aaPredicted RBP26.55■■□□□ 1.84
SHMT2-206ENST00000553529 NBPF1Q3BBV0 1214 aa26.55■■□□□ 1.84
SHMT2-206ENST00000553529 NPHP3Q7Z494 1330 aa26.54■■□□□ 1.84
SHMT2-206ENST00000553529 KIF1AQ12756 1690 aa26.54■■□□□ 1.84
SHMT2-206ENST00000553529 PRR36Q9H6K5 1346 aa26.53■■□□□ 1.84
SHMT2-206ENST00000553529 PLEKHG5O94827 1062 aa26.52■■□□□ 1.84
SHMT2-206ENST00000553529 PMFBP1Q8TBY8 1022 aa26.51■■□□□ 1.83
SHMT2-206ENST00000553529 NEUROD1Q13562 356 aa26.5■■□□□ 1.83
SHMT2-206ENST00000553529 L3MBTL2Q969R5 705 aa26.49■■□□□ 1.83
SHMT2-206ENST00000553529 PHF8Q9UPP1 1060 aa26.49■■□□□ 1.83
SHMT2-206ENST00000553529 KIAA1210Q9ULL0 1709 aa26.47■■□□□ 1.83
SHMT2-206ENST00000553529 ZNF772Q68DY9 489 aaPredicted RBP26.46■■□□□ 1.83
SHMT2-206ENST00000553529 KRT28Q7Z3Y7 464 aa26.46■■□□□ 1.83
SHMT2-206ENST00000553529 TULP4Q9NRJ4 1543 aa26.44■■□□□ 1.82
SHMT2-206ENST00000553529 SPATA31A3Q5VYP0 1347 aa26.43■■□□□ 1.82
SHMT2-206ENST00000553529 MARF1Q9Y4F3 1742 aaKnown RBP26.42■■□□□ 1.82
SHMT2-206ENST00000553529 WASLO00401 505 aaPredicted RBP26.42■■□□□ 1.82
SHMT2-206ENST00000553529 CABLES1Q8TDN4 633 aa26.42■■□□□ 1.82
SHMT2-206ENST00000553529 NGLY1Q96IV0 654 aa26.42■■□□□ 1.82
SHMT2-206ENST00000553529 ANKARQ7Z5J8 1434 aa26.41■■□□□ 1.82
SHMT2-206ENST00000553529 STAC3Q96MF2 364 aa26.41■■□□□ 1.82
SHMT2-206ENST00000553529 TRPM3Q9HCF6 1732 aaPredicted RBP26.41■■□□□ 1.82
SHMT2-206ENST00000553529 TNS3Q68CZ2 1445 aa26.39■■□□□ 1.82
SHMT2-206ENST00000553529 ABCA3Q99758 1704 aa26.39■■□□□ 1.82
SHMT2-206ENST00000553529 ATP7BP35670 1465 aa26.39■■□□□ 1.82
SHMT2-206ENST00000553529 TRPM1Q7Z4N2 1603 aa26.39■■□□□ 1.81
SHMT2-206ENST00000553529 RXRBP28702 533 aa26.37■■□□□ 1.81
SHMT2-206ENST00000553529 QTRT2Q9H974 415 aaKnown RBP26.37■■□□□ 1.81
SHMT2-206ENST00000553529 RGS12O14924 1447 aa26.37■■□□□ 1.81
SHMT2-206ENST00000553529 LMOD2Q6P5Q4 547 aa26.36■■□□□ 1.81
SHMT2-206ENST00000553529 USP21Q9UK80 565 aa26.35■■□□□ 1.81
SHMT2-206ENST00000553529 PSME1Q06323 249 aa26.34■■□□□ 1.81
SHMT2-206ENST00000553529 NBPF8Q3BBV2 869 aa26.34■■□□□ 1.81
SHMT2-206ENST00000553529 CDK19Q9BWU1 502 aa26.34■■□□□ 1.81
SHMT2-206ENST00000553529 TOPAZ1Q8N9V7 1692 aa26.34■■□□□ 1.81
SHMT2-206ENST00000553529 QRICH2Q9H0J4 1663 aa26.34■■□□□ 1.81
SHMT2-206ENST00000553529 BCL9LQ86UU0 1499 aa26.33■■□□□ 1.81
SHMT2-206ENST00000553529 ALS2Q96Q42 1657 aa26.32■■□□□ 1.8
SHMT2-206ENST00000553529 TRIM26Q12899 539 aaPredicted RBP26.32■■□□□ 1.8
SHMT2-206ENST00000553529 FNBP4Q8N3X1 1017 aaPredicted RBP26.31■■□□□ 1.8
SHMT2-206ENST00000553529 NUDT16Q96DE0 195 aaKnown RBP26.31■■□□□ 1.8
SHMT2-206ENST00000553529 SBNO1A3KN83 1393 aa26.31■■□□□ 1.8
SHMT2-206ENST00000553529 ITSN1Q15811 1721 aa26.3■■□□□ 1.8
SHMT2-206ENST00000553529 ATRNO75882 1429 aa26.29■■□□□ 1.8
SHMT2-206ENST00000553529 PLCH1Q4KWH8 1693 aa26.27■■□□□ 1.8
SHMT2-206ENST00000553529 CRYBG1Q9Y4K1 1723 aa26.27■■□□□ 1.8
SHMT2-206ENST00000553529 CENPJQ9HC77 1338 aaPredicted RBP26.26■■□□□ 1.79
SHMT2-206ENST00000553529 EIF3AQ14152 1382 aaKnown RBP26.25■■□□□ 1.79
SHMT2-206ENST00000553529 RBM6P78332 1123 aaKnown RBP26.25■■□□□ 1.79
SHMT2-206ENST00000553529 NGDNQ8NEJ9 315 aaKnown RBP26.25■■□□□ 1.79
SHMT2-206ENST00000553529 CABP2Q9NPB3 220 aa26.25■■□□□ 1.79
SHMT2-206ENST00000553529 SLIT2O94813 1529 aa26.24■■□□□ 1.79
SHMT2-206ENST00000553529 CDK12Q9NYV4 1490 aaPredicted RBP26.24■■□□□ 1.79
SHMT2-206ENST00000553529 ROCK2O75116 1388 aaKnown RBP26.22■■□□□ 1.79
SHMT2-206ENST00000553529 GPRASP1Q5JY77 1395 aa26.22■■□□□ 1.79
SHMT2-206ENST00000553529 GLI3P10071 1580 aa26.22■■□□□ 1.79
SHMT2-206ENST00000553529 PAK3O75914 559 aaPredicted RBP26.22■■□□□ 1.79
SHMT2-206ENST00000553529 HAP1P54257 671 aaPredicted RBP26.22■■□□□ 1.79
SHMT2-206ENST00000553529 NUTM2GQ5VZR2 741 aa26.22■■□□□ 1.79
SHMT2-206ENST00000553529 TRPC5Q9UL62 973 aaPredicted RBP26.22■■□□□ 1.79
SHMT2-206ENST00000553529 UPF1Q92900 1129 aaKnown RBP eCLIP26.21■■□□□ 1.79
SHMT2-206ENST00000553529 TNKS1BP1Q9C0C2 1729 aaKnown RBP26.21■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms