RNA–Protein interactions for RNA: ENST00000553488.5

ATXN3-219, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 1,065 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-219ENST00000553488 TOM1O60784 492 aa11.79□□□□□ -0.52
ATXN3-219ENST00000553488 PIP4K2BP78356 416 aa11.79□□□□□ -0.52
ATXN3-219ENST00000553488 NKX1-1Q15270 411 aaPredicted RBP11.79□□□□□ -0.52
ATXN3-219ENST00000553488 BOLA1Q9Y3E2 137 aa11.79□□□□□ -0.52
ATXN3-219ENST00000553488 CFAP65Q6ZU64 1925 aaKnown RBP11.78□□□□□ -0.52
ATXN3-219ENST00000553488 ERVK-7P63135 1459 aa11.78□□□□□ -0.52
ATXN3-219ENST00000553488 ANKLE2Q86XL3 938 aa11.77□□□□□ -0.53
ATXN3-219ENST00000553488 WASHC2CQ9Y4E1 1318 aa11.76□□□□□ -0.53
ATXN3-219ENST00000553488 THEMISQ8N1K5 641 aaPredicted RBP11.75□□□□□ -0.53
ATXN3-219ENST00000553488 ARHGAP23Q9P227 1491 aa11.75□□□□□ -0.53
ATXN3-219ENST00000553488 MICALL2Q8IY33 904 aa11.74□□□□□ -0.53
ATXN3-219ENST00000553488 SLIT1O75093 1534 aa11.74□□□□□ -0.53
ATXN3-219ENST00000553488 PRDM15P57071 1507 aaPredicted RBP11.74□□□□□ -0.53
ATXN3-219ENST00000553488 CROCC2H7BZ55 1655 aa11.74□□□□□ -0.53
ATXN3-219ENST00000553488 RSPH4AQ5TD94 716 aa11.73□□□□□ -0.53
ATXN3-219ENST00000553488 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.73□□□□□ -0.53
ATXN3-219ENST00000553488 SCAF11Q99590 1463 aaKnown RBP11.72□□□□□ -0.53
ATXN3-219ENST00000553488 LRRC9Q6ZRR7 1453 aa11.71□□□□□ -0.53
ATXN3-219ENST00000553488 SLAIN1Q8ND83 568 aa11.71□□□□□ -0.53
ATXN3-219ENST00000553488 KDM5AP29375 1690 aaKnown RBP11.71□□□□□ -0.54
ATXN3-219ENST00000553488 PIK3C2BO00750 1634 aa11.71□□□□□ -0.54
ATXN3-219ENST00000553488 DUOX2Q9NRD8 1548 aa11.7□□□□□ -0.54
ATXN3-219ENST00000553488 PPP1R37O75864 691 aa11.69□□□□□ -0.54
ATXN3-219ENST00000553488 C3orf67Q6ZVT6 689 aa11.69□□□□□ -0.54
ATXN3-219ENST00000553488 ARHGAP31Q2M1Z3 1444 aa11.69□□□□□ -0.54
ATXN3-219ENST00000553488 MAP3K1Q13233 1512 aa11.67□□□□□ -0.54
ATXN3-219ENST00000553488 TSPY4P0CV99 314 aa11.67□□□□□ -0.54
ATXN3-219ENST00000553488 TSPY10P0CW01 314 aa11.67□□□□□ -0.54
ATXN3-219ENST00000553488 RGS17Q9UGC6 210 aaPredicted RBP11.67□□□□□ -0.54
ATXN3-219ENST00000553488 TMEM92Q6UXU6 159 aa11.66□□□□□ -0.54
ATXN3-219ENST00000553488 MYOM3Q5VTT5 1437 aa11.66□□□□□ -0.54
ATXN3-219ENST00000553488 VPS8Q8N3P4 1428 aa11.66□□□□□ -0.54
ATXN3-219ENST00000553488 NWD1Q149M9 1564 aa11.66□□□□□ -0.54
ATXN3-219ENST00000553488 ROBO1Q9Y6N7 1651 aa11.65□□□□□ -0.54
ATXN3-219ENST00000553488 LTKP29376 864 aa11.65□□□□□ -0.54
ATXN3-219ENST00000553488 ERBINQ96RT1 1412 aa11.65□□□□□ -0.54
ATXN3-219ENST00000553488 G3V3G9 751 aa11.64□□□□□ -0.55
ATXN3-219ENST00000553488 GTPBP6O43824 516 aaPredicted RBP11.64□□□□□ -0.55
ATXN3-219ENST00000553488 LCE2DQ5TA82 110 aaPredicted RBP11.64□□□□□ -0.55
ATXN3-219ENST00000553488 TET3O43151 1660 aa11.64□□□□□ -0.55
ATXN3-219ENST00000553488 FAM135BQ49AJ0 1406 aa11.63□□□□□ -0.55
ATXN3-219ENST00000553488 EFCAB6Q5THR3 1501 aa11.63□□□□□ -0.55
ATXN3-219ENST00000553488 LMTK2Q8IWU2 1503 aa11.63□□□□□ -0.55
ATXN3-219ENST00000553488 SETD1AO15047 1707 aaKnown RBP11.63□□□□□ -0.55
ATXN3-219ENST00000553488 PTPN23Q9H3S7 1636 aa11.62□□□□□ -0.55
ATXN3-219ENST00000553488 KIF15Q9NS87 1388 aa11.62□□□□□ -0.55
ATXN3-219ENST00000553488 TMEM2Q9UHN6 1383 aa11.62□□□□□ -0.55
ATXN3-219ENST00000553488 ADGRB3O60242 1522 aa11.61□□□□□ -0.55
ATXN3-219ENST00000553488 MYO5BQ9ULV0 1848 aa11.61□□□□□ -0.55
ATXN3-219ENST00000553488 ABCC5O15440 1437 aa11.6□□□□□ -0.55
ATXN3-219ENST00000553488 NKTRP30414 1462 aaKnown RBP11.6□□□□□ -0.55
ATXN3-219ENST00000553488 TMEM94Q12767 1356 aa11.6□□□□□ -0.55
ATXN3-219ENST00000553488 TXNDC2Q86VQ3 553 aa11.6□□□□□ -0.55
ATXN3-219ENST00000553488 RYDENQ9NUL5 291 aaKnown RBP11.6□□□□□ -0.55
ATXN3-219ENST00000553488 KANK4Q5T7N3 995 aaPredicted RBP11.59□□□□□ -0.55
ATXN3-219ENST00000553488 BBXQ8WY36 941 aaPredicted RBP11.59□□□□□ -0.55
ATXN3-219ENST00000553488 CHD2O14647 1828 aaKnown RBP11.58□□□□□ -0.56
ATXN3-219ENST00000553488 PHLPP1O60346 1717 aa11.58□□□□□ -0.56
ATXN3-219ENST00000553488 KIF3CO14782 793 aa11.58□□□□□ -0.56
ATXN3-219ENST00000553488 NOS1P29475 1434 aa11.58□□□□□ -0.56
ATXN3-219ENST00000553488 DAPK1P53355 1430 aa11.58□□□□□ -0.56
ATXN3-219ENST00000553488 COL16A1Q07092 1604 aaPredicted RBP11.57□□□□□ -0.56
ATXN3-219ENST00000553488 GCC2Q8IWJ2 1684 aa11.56□□□□□ -0.56
ATXN3-219ENST00000553488 POTEAQ6S8J7 498 aa11.56□□□□□ -0.56
ATXN3-219ENST00000553488 EID1Q9Y6B2 187 aa11.55□□□□□ -0.56
ATXN3-219ENST00000553488 KCNA6P17658 529 aa11.54□□□□□ -0.56
ATXN3-219ENST00000553488 ZFYVE9O95405 1425 aa11.53□□□□□ -0.56
ATXN3-219ENST00000553488 FGD6Q6ZV73 1430 aa11.53□□□□□ -0.56
ATXN3-219ENST00000553488 HOXB3P14651 431 aaPredicted RBP11.53□□□□□ -0.56
ATXN3-219ENST00000553488 IDI1Q13907 227 aa11.53□□□□□ -0.56
ATXN3-219ENST00000553488 TMEM131LA2VDJ0 1609 aa11.53□□□□□ -0.56
ATXN3-219ENST00000553488 KANK1Q14678 1352 aa11.53□□□□□ -0.56
ATXN3-219ENST00000553488 ADGRL2O95490 1459 aa11.52□□□□□ -0.56
ATXN3-219ENST00000553488 RRP7BPQ9NSQ0 103 aa11.52□□□□□ -0.57
ATXN3-219ENST00000553488 SHPRHQ149N8 1683 aa11.52□□□□□ -0.57
ATXN3-219ENST00000553488 RPRD2Q5VT52 1461 aaKnown RBP11.51□□□□□ -0.57
ATXN3-219ENST00000553488 LRP6O75581 1613 aa11.51□□□□□ -0.57
ATXN3-219ENST00000553488 SNPHO15079 494 aa11.51□□□□□ -0.57
ATXN3-219ENST00000553488 SLC26A8Q96RN1 970 aa11.51□□□□□ -0.57
ATXN3-219ENST00000553488 AHDC1Q5TGY3 1603 aaPredicted RBP11.5□□□□□ -0.57
ATXN3-219ENST00000553488 ST18O60284 1047 aa11.5□□□□□ -0.57
ATXN3-219ENST00000553488 RBM33Q96EV2 1170 aaKnown RBP11.5□□□□□ -0.57
ATXN3-219ENST00000553488 FAM163AQ96GL9 167 aaPredicted RBP11.5□□□□□ -0.57
ATXN3-219ENST00000553488 MSH6P52701 1360 aa11.5□□□□□ -0.57
ATXN3-219ENST00000553488 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.49□□□□□ -0.57
ATXN3-219ENST00000553488 SRCAPQ6ZRS2 3230 aa11.49□□□□□ -0.57
ATXN3-219ENST00000553488 C2orf72A6NCS6 295 aa11.49□□□□□ -0.57
ATXN3-219ENST00000553488 PROSER2Q86WR7 435 aaPredicted RBP11.49□□□□□ -0.57
ATXN3-219ENST00000553488 ANKRD30AQ9BXX3 1397 aa11.49□□□□□ -0.57
ATXN3-219ENST00000553488 JCADQ9P266 1359 aa11.49□□□□□ -0.57
ATXN3-219ENST00000553488 PLEKHG1Q9ULL1 1385 aa11.49□□□□□ -0.57
ATXN3-219ENST00000553488 UNC13BO14795 1591 aa11.49□□□□□ -0.57
ATXN3-219ENST00000553488 DIP2AQ14689 1571 aa11.48□□□□□ -0.57
ATXN3-219ENST00000553488 E9PCH4 1651 aa11.47□□□□□ -0.57
ATXN3-219ENST00000553488 ADAMTS13Q76LX8 1427 aa11.46□□□□□ -0.57
ATXN3-219ENST00000553488 RIMS2Q9UQ26 1411 aa11.46□□□□□ -0.57
ATXN3-219ENST00000553488 NCOA3Q9Y6Q9 1424 aa11.46□□□□□ -0.57
ATXN3-219ENST00000553488 SLC52A1Q9NWF4 448 aa11.46□□□□□ -0.57
ATXN3-219ENST00000553488 SLAIN2Q9P270 581 aa11.45□□□□□ -0.58
ATXN3-219ENST00000553488 XRN1Q8IZH2 1706 aaKnown RBP11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms