RNA–Protein interactions for RNA: ENST00000553256.5

PTCH1-227, Transcript of patched 1, humanhuman

TSL 4

Gene PTCH1, Length 537 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-227ENST00000553256 PHLPP1O60346 1717 aa28.15■■■□□ 2.1
PTCH1-227ENST00000553256 NHSL1Q5SYE7 1610 aa28.12■■■□□ 2.09
PTCH1-227ENST00000553256 SIN3AQ96ST3 1273 aa28.09■■■□□ 2.09
PTCH1-227ENST00000553256 JCADQ9P266 1359 aa28.07■■■□□ 2.08
PTCH1-227ENST00000553256 ILDR2Q71H61 639 aa28.06■■■□□ 2.08
PTCH1-227ENST00000553256 ORAI2Q96SN7 254 aa28.06■■■□□ 2.08
PTCH1-227ENST00000553256 KIAA1210Q9ULL0 1709 aa28.04■■■□□ 2.08
PTCH1-227ENST00000553256 L3MBTL2Q969R5 705 aa28.03■■■□□ 2.08
PTCH1-227ENST00000553256 PRAM1Q96QH2 718 aa28.03■■■□□ 2.08
PTCH1-227ENST00000553256 DDX17Q92841 729 aaKnown RBP28.02■■■□□ 2.08
PTCH1-227ENST00000553256 FMN2Q9NZ56 1722 aa28.01■■■□□ 2.07
PTCH1-227ENST00000553256 ADGRB2O60241 1585 aa28■■■□□ 2.07
PTCH1-227ENST00000553256 SHPRHQ149N8 1683 aa28■■■□□ 2.07
PTCH1-227ENST00000553256 SOS2Q07890 1332 aaPredicted RBP27.99■■■□□ 2.07
PTCH1-227ENST00000553256 RGS17Q9UGC6 210 aaPredicted RBP27.99■■■□□ 2.07
PTCH1-227ENST00000553256 TRAK1Q9UPV9 953 aa27.98■■■□□ 2.07
PTCH1-227ENST00000553256 LRP6O75581 1613 aa27.97■■■□□ 2.07
PTCH1-227ENST00000553256 NBPF1Q3BBV0 1214 aa27.97■■■□□ 2.07
PTCH1-227ENST00000553256 ARHGEF28Q8N1W1 1705 aaKnown RBP27.95■■■□□ 2.07
PTCH1-227ENST00000553256 SPATA31A6Q5VVP1 1343 aa27.93■■■□□ 2.06
PTCH1-227ENST00000553256 PXDNQ92626 1479 aa27.93■■■□□ 2.06
PTCH1-227ENST00000553256 SAFB2Q14151 953 aaKnown RBP eCLIP27.92■■■□□ 2.06
PTCH1-227ENST00000553256 USP32Q8NFA0 1604 aa27.92■■■□□ 2.06
PTCH1-227ENST00000553256 PNPLA6Q8IY17 1366 aa27.91■■■□□ 2.06
PTCH1-227ENST00000553256 LRRC59Q96AG4 307 aaKnown RBP27.91■■■□□ 2.06
PTCH1-227ENST00000553256 NEUROD1Q13562 356 aa27.9■■■□□ 2.06
PTCH1-227ENST00000553256 ESCO1Q5FWF5 840 aa27.9■■■□□ 2.06
PTCH1-227ENST00000553256 POGKQ9P215 609 aa27.9■■■□□ 2.06
PTCH1-227ENST00000553256 NUTM2FA1L443 756 aa27.89■■■□□ 2.06
PTCH1-227ENST00000553256 ANKARQ7Z5J8 1434 aa27.88■■■□□ 2.05
PTCH1-227ENST00000553256 TRPM1Q7Z4N2 1603 aa27.85■■■□□ 2.05
PTCH1-227ENST00000553256 NPHP3Q7Z494 1330 aa27.85■■■□□ 2.05
PTCH1-227ENST00000553256 PRR36Q9H6K5 1346 aa27.85■■■□□ 2.05
PTCH1-227ENST00000553256 RGPD8O14715 1765 aaPredicted RBP27.84■■■□□ 2.05
PTCH1-227ENST00000553256 FOXO3O43524 673 aa27.84■■■□□ 2.05
PTCH1-227ENST00000553256 NBPF8Q3BBV2 869 aa27.84■■■□□ 2.05
PTCH1-227ENST00000553256 MINK1Q8N4C8 1332 aaPredicted RBP27.84■■■□□ 2.05
PTCH1-227ENST00000553256 KIF1AQ12756 1690 aa27.84■■■□□ 2.05
PTCH1-227ENST00000553256 WASLO00401 505 aaPredicted RBP27.83■■■□□ 2.05
PTCH1-227ENST00000553256 HIRIP3Q9BW71 556 aaPredicted RBP27.83■■■□□ 2.05
PTCH1-227ENST00000553256 TULP4Q9NRJ4 1543 aa27.82■■■□□ 2.04
PTCH1-227ENST00000553256 PHF23Q9BUL5 403 aaPredicted RBP27.81■■■□□ 2.04
PTCH1-227ENST00000553256 COL22A1Q8NFW1 1626 aaPredicted RBP27.81■■■□□ 2.04
PTCH1-227ENST00000553256 GPRASP1Q5JY77 1395 aa27.79■■■□□ 2.04
PTCH1-227ENST00000553256 PHF8Q9UPP1 1060 aa27.79■■■□□ 2.04
PTCH1-227ENST00000553256 POTEAQ6S8J7 498 aa27.77■■■□□ 2.04
PTCH1-227ENST00000553256 ATP7BP35670 1465 aa27.76■■■□□ 2.04
PTCH1-227ENST00000553256 XPCQ01831 940 aaPredicted RBP27.76■■■□□ 2.03
PTCH1-227ENST00000553256 EIF3AQ14152 1382 aaKnown RBP27.74■■■□□ 2.03
PTCH1-227ENST00000553256 SPATA31A3Q5VYP0 1347 aa27.73■■■□□ 2.03
PTCH1-227ENST00000553256 KRT28Q7Z3Y7 464 aa27.71■■■□□ 2.03
PTCH1-227ENST00000553256 CENPJQ9HC77 1338 aaPredicted RBP27.7■■■□□ 2.03
PTCH1-227ENST00000553256 NUTM2BA6NNL0 878 aaPredicted RBP27.7■■■□□ 2.02
PTCH1-227ENST00000553256 NUTM2EB1AL46 878 aaPredicted RBP27.7■■■□□ 2.02
PTCH1-227ENST00000553256 SOCS7O14512 581 aa27.7■■■□□ 2.02
PTCH1-227ENST00000553256 NUTM2AQ8IVF1 878 aaPredicted RBP27.7■■■□□ 2.02
PTCH1-227ENST00000553256 SBNO1A3KN83 1393 aa27.7■■■□□ 2.02
PTCH1-227ENST00000553256 CDK19Q9BWU1 502 aa27.69■■■□□ 2.02
PTCH1-227ENST00000553256 ROCK2O75116 1388 aaKnown RBP27.69■■■□□ 2.02
PTCH1-227ENST00000553256 TONSLQ96HA7 1378 aa27.69■■■□□ 2.02
PTCH1-227ENST00000553256 PMFBP1Q8TBY8 1022 aa27.68■■■□□ 2.02
PTCH1-227ENST00000553256 NUDT16Q96DE0 195 aaKnown RBP27.68■■■□□ 2.02
PTCH1-227ENST00000553256 PCGF6Q9BYE7 350 aa27.68■■■□□ 2.02
PTCH1-227ENST00000553256 RALGAPBQ86X10 1494 aa27.68■■■□□ 2.02
PTCH1-227ENST00000553256 TOPAZ1Q8N9V7 1692 aa27.68■■■□□ 2.02
PTCH1-227ENST00000553256 TRPM3Q9HCF6 1732 aaPredicted RBP27.67■■■□□ 2.02
PTCH1-227ENST00000553256 TNS3Q68CZ2 1445 aa27.67■■■□□ 2.02
PTCH1-227ENST00000553256 QRICH2Q9H0J4 1663 aa27.65■■■□□ 2.02
PTCH1-227ENST00000553256 POLR3AO14802 1390 aaPredicted RBP27.62■■■□□ 2.01
PTCH1-227ENST00000553256 MEX3CQ5U5Q3 659 aaKnown RBP27.62■■■□□ 2.01
PTCH1-227ENST00000553256 PLEKHG3A1L390 1219 aa27.61■■■□□ 2.01
PTCH1-227ENST00000553256 CLSPNQ9HAW4 1339 aa27.61■■■□□ 2.01
PTCH1-227ENST00000553256 PSME1Q06323 249 aa27.6■■■□□ 2.01
PTCH1-227ENST00000553256 CCDC61Q9Y6R9 512 aa27.6■■■□□ 2.01
PTCH1-227ENST00000553256 ITSN1Q15811 1721 aa27.6■■■□□ 2.01
PTCH1-227ENST00000553256 AFF2P51816 1311 aa27.6■■■□□ 2.01
PTCH1-227ENST00000553256 ALS2Q96Q42 1657 aa27.59■■■□□ 2.01
PTCH1-227ENST00000553256 ZNF772Q68DY9 489 aaPredicted RBP27.59■■■□□ 2.01
PTCH1-227ENST00000553256 ADAMTS2O95450 1211 aa27.58■■■□□ 2.01
PTCH1-227ENST00000553256 FNBP4Q8N3X1 1017 aaPredicted RBP27.58■■■□□ 2.01
PTCH1-227ENST00000553256 SBNO2Q9Y2G9 1366 aa27.58■■■□□ 2.01
PTCH1-227ENST00000553256 C8orf37Q96NL8 207 aa27.57■■■□□ 2
PTCH1-227ENST00000553256 CABP2Q9NPB3 220 aa27.55■■■□□ 2
PTCH1-227ENST00000553256 ARHGEF10O15013 1369 aa27.55■■■□□ 2
PTCH1-227ENST00000553256 ABCA3Q99758 1704 aa27.53■■■□□ 2
PTCH1-227ENST00000553256 MARF1Q9Y4F3 1742 aaKnown RBP27.53■■■□□ 2
PTCH1-227ENST00000553256 ACEP12821 1306 aa27.53■■■□□ 2
PTCH1-227ENST00000553256 CARD11Q9BXL7 1154 aa27.53■■■□□ 2
PTCH1-227ENST00000553256 BCL9LQ86UU0 1499 aa27.52■■■□□ 2
PTCH1-227ENST00000553256 NGDNQ8NEJ9 315 aaKnown RBP27.52■■■□□ 2
PTCH1-227ENST00000553256 PPIP5K1Q6PFW1 1433 aa27.5■■□□□ 1.99
PTCH1-227ENST00000553256 CRYBG1Q9Y4K1 1723 aa27.5■■□□□ 1.99
PTCH1-227ENST00000553256 CABLES1Q8TDN4 633 aa27.5■■□□□ 1.99
PTCH1-227ENST00000553256 TIMELESSQ9UNS1 1208 aa27.5■■□□□ 1.99
PTCH1-227ENST00000553256 SLIT2O94813 1529 aa27.5■■□□□ 1.99
PTCH1-227ENST00000553256 SRPK2P78362 688 aaKnown RBP27.49■■□□□ 1.99
PTCH1-227ENST00000553256 NGLY1Q96IV0 654 aa27.49■■□□□ 1.99
PTCH1-227ENST00000553256 EVC2Q86UK5 1308 aa27.48■■□□□ 1.99
PTCH1-227ENST00000553256 CDK12Q9NYV4 1490 aaPredicted RBP27.46■■□□□ 1.99
PTCH1-227ENST00000553256 ATRNO75882 1429 aa27.46■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms