RNA–Protein interactions for RNA: ENST00000550208.1

BRF1-216, Transcript of BRF1, RNA polymerase III transcription initiation factor subunit, humanhuman

TSL 3

Gene BRF1, Length 1,040 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1-216ENST00000550208 SAFB2Q14151 953 aaKnown RBP eCLIP32.24■■■□□ 2.75
BRF1-216ENST00000550208 TIMELESSQ9UNS1 1208 aa32.22■■■□□ 2.75
BRF1-216ENST00000550208 DLC1Q96QB1 1528 aa32.21■■■□□ 2.75
BRF1-216ENST00000550208 NALCNQ8IZF0 1738 aa32.21■■■□□ 2.75
BRF1-216ENST00000550208 TRPM1Q7Z4N2 1603 aa32.19■■■□□ 2.74
BRF1-216ENST00000550208 DCCP43146 1447 aa32.18■■■□□ 2.74
BRF1-216ENST00000550208 ROCK2O75116 1388 aaKnown RBP32.17■■■□□ 2.74
BRF1-216ENST00000550208 MST1RQ04912 1400 aa32.12■■■□□ 2.73
BRF1-216ENST00000550208 MINK1Q8N4C8 1332 aaPredicted RBP32.11■■■□□ 2.73
BRF1-216ENST00000550208 HSPA1LP34931 641 aa32.11■■■□□ 2.73
BRF1-216ENST00000550208 HIRIP3Q9BW71 556 aaPredicted RBP32.1■■■□□ 2.73
BRF1-216ENST00000550208 ARHGEF28Q8N1W1 1705 aaKnown RBP32.09■■■□□ 2.73
BRF1-216ENST00000550208 NUTM2FA1L443 756 aa32.08■■■□□ 2.73
BRF1-216ENST00000550208 CARD11Q9BXL7 1154 aa32.08■■■□□ 2.73
BRF1-216ENST00000550208 GPRASP1Q5JY77 1395 aa32.07■■■□□ 2.73
BRF1-216ENST00000550208 ROBO1Q9Y6N7 1651 aa32.06■■■□□ 2.72
BRF1-216ENST00000550208 C1orf167Q5SNV9 1468 aa32.06■■■□□ 2.72
BRF1-216ENST00000550208 RALGAPBQ86X10 1494 aa32.06■■■□□ 2.72
BRF1-216ENST00000550208 BRINP3Q76B58 766 aa32.06■■■□□ 2.72
BRF1-216ENST00000550208 CDC42BPGQ6DT37 1551 aa32.05■■■□□ 2.72
BRF1-216ENST00000550208 ORAI2Q96SN7 254 aa32.03■■■□□ 2.72
BRF1-216ENST00000550208 CENPJQ9HC77 1338 aaPredicted RBP32.02■■■□□ 2.72
BRF1-216ENST00000550208 WASLO00401 505 aaPredicted RBP32■■■□□ 2.71
BRF1-216ENST00000550208 ESCO1Q5FWF5 840 aa31.98■■■□□ 2.71
BRF1-216ENST00000550208 FMN2Q9NZ56 1722 aa31.96■■■□□ 2.71
BRF1-216ENST00000550208 CDK19Q9BWU1 502 aa31.95■■■□□ 2.71
BRF1-216ENST00000550208 ADGRB2O60241 1585 aa31.94■■■□□ 2.7
BRF1-216ENST00000550208 DDX17Q92841 729 aaKnown RBP31.94■■■□□ 2.7
BRF1-216ENST00000550208 EIF3AQ14152 1382 aaKnown RBP31.92■■■□□ 2.7
BRF1-216ENST00000550208 PRR36Q9H6K5 1346 aa31.89■■■□□ 2.7
BRF1-216ENST00000550208 QRICH2Q9H0J4 1663 aa31.88■■■□□ 2.69
BRF1-216ENST00000550208 RGPD8O14715 1765 aaPredicted RBP31.88■■■□□ 2.69
BRF1-216ENST00000550208 PHLPP1O60346 1717 aa31.86■■■□□ 2.69
BRF1-216ENST00000550208 NUDT16Q96DE0 195 aaKnown RBP31.86■■■□□ 2.69
BRF1-216ENST00000550208 PHF8Q9UPP1 1060 aa31.86■■■□□ 2.69
BRF1-216ENST00000550208 ANKARQ7Z5J8 1434 aa31.85■■■□□ 2.69
BRF1-216ENST00000550208 FOXO3O43524 673 aa31.85■■■□□ 2.69
BRF1-216ENST00000550208 AHDC1Q5TGY3 1603 aaPredicted RBP31.85■■■□□ 2.69
BRF1-216ENST00000550208 USP32Q8NFA0 1604 aa31.84■■■□□ 2.69
BRF1-216ENST00000550208 ST20-MTHFSA0A0A6YYL1 179 aa31.83■■■□□ 2.69
BRF1-216ENST00000550208 CABP2Q9NPB3 220 aa31.83■■■□□ 2.69
BRF1-216ENST00000550208 TULP4Q9NRJ4 1543 aa31.83■■■□□ 2.69
BRF1-216ENST00000550208 SRPK2P78362 688 aaKnown RBP31.82■■■□□ 2.68
BRF1-216ENST00000550208 PMFBP1Q8TBY8 1022 aa31.82■■■□□ 2.68
BRF1-216ENST00000550208 EVC2Q86UK5 1308 aa31.8■■■□□ 2.68
BRF1-216ENST00000550208 NHSL1Q5SYE7 1610 aa31.8■■■□□ 2.68
BRF1-216ENST00000550208 COL16A1Q07092 1604 aaPredicted RBP31.78■■■□□ 2.68
BRF1-216ENST00000550208 XPCQ01831 940 aaPredicted RBP31.78■■■□□ 2.68
BRF1-216ENST00000550208 USP47Q96K76 1375 aa31.78■■■□□ 2.68
BRF1-216ENST00000550208 SOS2Q07890 1332 aaPredicted RBP31.77■■■□□ 2.68
BRF1-216ENST00000550208 NPHP3Q7Z494 1330 aa31.77■■■□□ 2.68
BRF1-216ENST00000550208 CCDC61Q9Y6R9 512 aa31.76■■■□□ 2.67
BRF1-216ENST00000550208 LRRC59Q96AG4 307 aaKnown RBP31.75■■■□□ 2.67
BRF1-216ENST00000550208 TESK2Q96S53 571 aa31.75■■■□□ 2.67
BRF1-216ENST00000550208 SBNO2Q9Y2G9 1366 aa31.75■■■□□ 2.67
BRF1-216ENST00000550208 ATP7BP35670 1465 aa31.75■■■□□ 2.67
BRF1-216ENST00000550208 KRT28Q7Z3Y7 464 aa31.74■■■□□ 2.67
BRF1-216ENST00000550208 PSME1Q06323 249 aa31.72■■■□□ 2.67
BRF1-216ENST00000550208 KIF1AQ12756 1690 aa31.72■■■□□ 2.67
BRF1-216ENST00000550208 JCADQ9P266 1359 aa31.71■■■□□ 2.67
BRF1-216ENST00000550208 NGDNQ8NEJ9 315 aaKnown RBP31.71■■■□□ 2.67
BRF1-216ENST00000550208 PLEKHG3A1L390 1219 aa31.69■■■□□ 2.66
BRF1-216ENST00000550208 PXDNQ92626 1479 aa31.69■■■□□ 2.66
BRF1-216ENST00000550208 CABP1Q9NZU7 370 aa31.67■■■□□ 2.66
BRF1-216ENST00000550208 ACEP12821 1306 aa31.65■■■□□ 2.66
BRF1-216ENST00000550208 PPIP5K1Q6PFW1 1433 aa31.65■■■□□ 2.66
BRF1-216ENST00000550208 SLC24A1O60721 1099 aa31.64■■■□□ 2.66
BRF1-216ENST00000550208 ITSN1Q15811 1721 aa31.63■■■□□ 2.65
BRF1-216ENST00000550208 HSPA5P11021 654 aaKnown RBP31.63■■■□□ 2.65
BRF1-216ENST00000550208 EIF4G2P78344 907 aaKnown RBP eCLIP31.63■■■□□ 2.65
BRF1-216ENST00000550208 TOPAZ1Q8N9V7 1692 aa31.62■■■□□ 2.65
BRF1-216ENST00000550208 PNPLA6Q8IY17 1366 aa31.61■■■□□ 2.65
BRF1-216ENST00000550208 SPATA31A3Q5VYP0 1347 aa31.6■■■□□ 2.65
BRF1-216ENST00000550208 TMF1P82094 1093 aa31.6■■■□□ 2.65
BRF1-216ENST00000550208 POLR3AO14802 1390 aaPredicted RBP31.59■■■□□ 2.65
BRF1-216ENST00000550208 ATAD2Q6PL18 1390 aa31.59■■■□□ 2.65
BRF1-216ENST00000550208 PUS7Q96PZ0 661 aaKnown RBP31.59■■■□□ 2.65
BRF1-216ENST00000550208 SHPRHQ149N8 1683 aa31.57■■■□□ 2.65
BRF1-216ENST00000550208 SBNO1A3KN83 1393 aa31.57■■■□□ 2.64
BRF1-216ENST00000550208 DISP3Q9P2K9 1392 aa31.57■■■□□ 2.64
BRF1-216ENST00000550208 SPATA31A6Q5VVP1 1343 aa31.57■■■□□ 2.64
BRF1-216ENST00000550208 NUTM2BA6NNL0 878 aaPredicted RBP31.56■■■□□ 2.64
BRF1-216ENST00000550208 NUTM2EB1AL46 878 aaPredicted RBP31.56■■■□□ 2.64
BRF1-216ENST00000550208 NUTM2AQ8IVF1 878 aaPredicted RBP31.56■■■□□ 2.64
BRF1-216ENST00000550208 LMOD2Q6P5Q4 547 aa31.55■■■□□ 2.64
BRF1-216ENST00000550208 PAK3O75914 559 aaPredicted RBP31.54■■■□□ 2.64
BRF1-216ENST00000550208 TMC1Q8TDI8 760 aa31.54■■■□□ 2.64
BRF1-216ENST00000550208 SLC12A5Q9H2X9 1139 aa31.53■■■□□ 2.64
BRF1-216ENST00000550208 TNS3Q68CZ2 1445 aa31.51■■■□□ 2.64
BRF1-216ENST00000550208 MED1Q15648 1581 aaPredicted RBP31.5■■■□□ 2.63
BRF1-216ENST00000550208 TRPM3Q9HCF6 1732 aaPredicted RBP31.49■■■□□ 2.63
BRF1-216ENST00000550208 PLEKHG5O94827 1062 aa31.48■■■□□ 2.63
BRF1-216ENST00000550208 ZNF692Q9BU19 519 aaPredicted RBP31.48■■■□□ 2.63
BRF1-216ENST00000550208 LRP6O75581 1613 aa31.47■■■□□ 2.63
BRF1-216ENST00000550208 CDCA8Q53HL2 280 aa31.47■■■□□ 2.63
BRF1-216ENST00000550208 CABLES1Q8TDN4 633 aa31.45■■■□□ 2.63
BRF1-216ENST00000550208 ARHGEF10O15013 1369 aa31.44■■■□□ 2.62
BRF1-216ENST00000550208 COL22A1Q8NFW1 1626 aaPredicted RBP31.44■■■□□ 2.62
BRF1-216ENST00000550208 CPSF1Q10570 1443 aaKnown RBP31.43■■■□□ 2.62
BRF1-216ENST00000550208 MEX3CQ5U5Q3 659 aaKnown RBP31.43■■■□□ 2.62
Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms