RNA–Protein interactions for RNA: ENST00000549328.1

CHMP1A-207, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 3

Gene CHMP1A, Length 1,003 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-207ENST00000549328 KNDC1Q76NI1 1749 aa27.33■■□□□ 1.97
CHMP1A-207ENST00000549328 LAMC1P11047 1609 aa27.33■■□□□ 1.97
CHMP1A-207ENST00000549328 DHX57Q6P158 1386 aaKnown RBP27.33■■□□□ 1.97
CHMP1A-207ENST00000549328 CDC42BPGQ6DT37 1551 aa27.32■■□□□ 1.96
CHMP1A-207ENST00000549328 ORAI2Q96SN7 254 aa27.32■■□□□ 1.96
CHMP1A-207ENST00000549328 DDX17Q92841 729 aaKnown RBP27.3■■□□□ 1.96
CHMP1A-207ENST00000549328 LRP6O75581 1613 aa27.3■■□□□ 1.96
CHMP1A-207ENST00000549328 POTEAQ6S8J7 498 aa27.29■■□□□ 1.96
CHMP1A-207ENST00000549328 PLEKHH1Q9ULM0 1364 aa27.28■■□□□ 1.96
CHMP1A-207ENST00000549328 SOS2Q07890 1332 aaPredicted RBP27.27■■□□□ 1.96
CHMP1A-207ENST00000549328 MEX3CQ5U5Q3 659 aaKnown RBP27.27■■□□□ 1.96
CHMP1A-207ENST00000549328 DCAF11Q8TEB1 546 aa27.27■■□□□ 1.96
CHMP1A-207ENST00000549328 ESCO1Q5FWF5 840 aa27.24■■□□□ 1.95
CHMP1A-207ENST00000549328 KDM2AQ9Y2K7 1162 aa27.24■■□□□ 1.95
CHMP1A-207ENST00000549328 PNPLA6Q8IY17 1366 aa27.23■■□□□ 1.95
CHMP1A-207ENST00000549328 NUTM2BA6NNL0 878 aaPredicted RBP27.23■■□□□ 1.95
CHMP1A-207ENST00000549328 NUTM2EB1AL46 878 aaPredicted RBP27.23■■□□□ 1.95
CHMP1A-207ENST00000549328 NUTM2AQ8IVF1 878 aaPredicted RBP27.23■■□□□ 1.95
CHMP1A-207ENST00000549328 NPHP3Q7Z494 1330 aa27.21■■□□□ 1.95
CHMP1A-207ENST00000549328 ZNF772Q68DY9 489 aaPredicted RBP27.2■■□□□ 1.94
CHMP1A-207ENST00000549328 ADGRB1O14514 1584 aa27.19■■□□□ 1.94
CHMP1A-207ENST00000549328 PRAM1Q96QH2 718 aa27.19■■□□□ 1.94
CHMP1A-207ENST00000549328 DLC1Q96QB1 1528 aa27.19■■□□□ 1.94
CHMP1A-207ENST00000549328 NUTM2FA1L443 756 aa27.17■■□□□ 1.94
CHMP1A-207ENST00000549328 FOXO3O43524 673 aa27.16■■□□□ 1.94
CHMP1A-207ENST00000549328 POGKQ9P215 609 aa27.16■■□□□ 1.94
CHMP1A-207ENST00000549328 FMN2Q9NZ56 1722 aa27.16■■□□□ 1.94
CHMP1A-207ENST00000549328 SAFB2Q14151 953 aaKnown RBP eCLIP27.12■■□□□ 1.93
CHMP1A-207ENST00000549328 TRAK1Q9UPV9 953 aa27.12■■□□□ 1.93
CHMP1A-207ENST00000549328 PXDNQ92626 1479 aa27.12■■□□□ 1.93
CHMP1A-207ENST00000549328 AFF2P51816 1311 aa27.1■■□□□ 1.93
CHMP1A-207ENST00000549328 KIF1AQ12756 1690 aa27.08■■□□□ 1.92
CHMP1A-207ENST00000549328 C8orf37Q96NL8 207 aa27.07■■□□□ 1.92
CHMP1A-207ENST00000549328 COL22A1Q8NFW1 1626 aaPredicted RBP27.06■■□□□ 1.92
CHMP1A-207ENST00000549328 XPCQ01831 940 aaPredicted RBP27.06■■□□□ 1.92
CHMP1A-207ENST00000549328 PHF8Q9UPP1 1060 aa27.06■■□□□ 1.92
CHMP1A-207ENST00000549328 ADGRB2O60241 1585 aa27.05■■□□□ 1.92
CHMP1A-207ENST00000549328 ADAMTS2O95450 1211 aa27.05■■□□□ 1.92
CHMP1A-207ENST00000549328 ANKARQ7Z5J8 1434 aa27.04■■□□□ 1.92
CHMP1A-207ENST00000549328 RXRBP28702 533 aa27.03■■□□□ 1.92
CHMP1A-207ENST00000549328 KRT28Q7Z3Y7 464 aa27.03■■□□□ 1.92
CHMP1A-207ENST00000549328 NGLY1Q96IV0 654 aa27.03■■□□□ 1.92
CHMP1A-207ENST00000549328 RGPD8O14715 1765 aaPredicted RBP27.02■■□□□ 1.92
CHMP1A-207ENST00000549328 SPATA31A3Q5VYP0 1347 aa27.01■■□□□ 1.91
CHMP1A-207ENST00000549328 EIF3AQ14152 1382 aaKnown RBP27■■□□□ 1.91
CHMP1A-207ENST00000549328 MINK1Q8N4C8 1332 aaPredicted RBP27■■□□□ 1.91
CHMP1A-207ENST00000549328 PSME1Q06323 249 aa27■■□□□ 1.91
CHMP1A-207ENST00000549328 HIRIP3Q9BW71 556 aaPredicted RBP27■■□□□ 1.91
CHMP1A-207ENST00000549328 KIAA1210Q9ULL0 1709 aa26.99■■□□□ 1.91
CHMP1A-207ENST00000549328 WASLO00401 505 aaPredicted RBP26.98■■□□□ 1.91
CHMP1A-207ENST00000549328 QTRT2Q9H974 415 aaKnown RBP26.98■■□□□ 1.91
CHMP1A-207ENST00000549328 FNBP4Q8N3X1 1017 aaPredicted RBP26.97■■□□□ 1.91
CHMP1A-207ENST00000549328 CDK12Q9NYV4 1490 aaPredicted RBP26.97■■□□□ 1.91
CHMP1A-207ENST00000549328 USP32Q8NFA0 1604 aa26.96■■□□□ 1.91
CHMP1A-207ENST00000549328 ARHGEF28Q8N1W1 1705 aaKnown RBP26.95■■□□□ 1.9
CHMP1A-207ENST00000549328 RBM6P78332 1123 aaKnown RBP26.94■■□□□ 1.9
CHMP1A-207ENST00000549328 SBNO1A3KN83 1393 aa26.94■■□□□ 1.9
CHMP1A-207ENST00000549328 PMFBP1Q8TBY8 1022 aa26.93■■□□□ 1.9
CHMP1A-207ENST00000549328 USP21Q9UK80 565 aa26.93■■□□□ 1.9
CHMP1A-207ENST00000549328 TULP4Q9NRJ4 1543 aa26.93■■□□□ 1.9
CHMP1A-207ENST00000549328 TNS3Q68CZ2 1445 aa26.92■■□□□ 1.9
CHMP1A-207ENST00000549328 NBPF1Q3BBV0 1214 aa26.92■■□□□ 1.9
CHMP1A-207ENST00000549328 L3MBTL2Q969R5 705 aa26.92■■□□□ 1.9
CHMP1A-207ENST00000549328 PRR36Q9H6K5 1346 aa26.91■■□□□ 1.9
CHMP1A-207ENST00000549328 SIN3AQ96ST3 1273 aa26.91■■□□□ 1.9
CHMP1A-207ENST00000549328 TRPC5Q9UL62 973 aaPredicted RBP26.89■■□□□ 1.9
CHMP1A-207ENST00000549328 ARHGEF10O15013 1369 aa26.88■■□□□ 1.89
CHMP1A-207ENST00000549328 MARF1Q9Y4F3 1742 aaKnown RBP26.87■■□□□ 1.89
CHMP1A-207ENST00000549328 GPRASP1Q5JY77 1395 aa26.86■■□□□ 1.89
CHMP1A-207ENST00000549328 NEUROD1Q13562 356 aa26.85■■□□□ 1.89
CHMP1A-207ENST00000549328 NUDT16Q96DE0 195 aaKnown RBP26.85■■□□□ 1.89
CHMP1A-207ENST00000549328 CDK19Q9BWU1 502 aa26.84■■□□□ 1.89
CHMP1A-207ENST00000549328 BCL9LQ86UU0 1499 aa26.84■■□□□ 1.89
CHMP1A-207ENST00000549328 LMOD2Q6P5Q4 547 aa26.83■■□□□ 1.89
CHMP1A-207ENST00000549328 NGDNQ8NEJ9 315 aaKnown RBP26.83■■□□□ 1.89
CHMP1A-207ENST00000549328 ATRNO75882 1429 aa26.82■■□□□ 1.88
CHMP1A-207ENST00000549328 ATP7BP35670 1465 aa26.82■■□□□ 1.88
CHMP1A-207ENST00000549328 HAP1P54257 671 aaPredicted RBP26.82■■□□□ 1.88
CHMP1A-207ENST00000549328 TRIM26Q12899 539 aaPredicted RBP26.81■■□□□ 1.88
CHMP1A-207ENST00000549328 RGS12O14924 1447 aa26.81■■□□□ 1.88
CHMP1A-207ENST00000549328 CABLES1Q8TDN4 633 aa26.8■■□□□ 1.88
CHMP1A-207ENST00000549328 CENPJQ9HC77 1338 aaPredicted RBP26.8■■□□□ 1.88
CHMP1A-207ENST00000549328 ITSN1Q15811 1721 aa26.79■■□□□ 1.88
CHMP1A-207ENST00000549328 TRPM3Q9HCF6 1732 aaPredicted RBP26.79■■□□□ 1.88
CHMP1A-207ENST00000549328 CCDC61Q9Y6R9 512 aa26.79■■□□□ 1.88
CHMP1A-207ENST00000549328 SLIT2O94813 1529 aa26.79■■□□□ 1.88
CHMP1A-207ENST00000549328 UPF1Q92900 1129 aaKnown RBP eCLIP26.78■■□□□ 1.881e-9■■□□□ 14.2
CHMP1A-207ENST00000549328 UNC5CLQ8IV45 518 aa26.77■■□□□ 1.88
CHMP1A-207ENST00000549328 GJD4Q96KN9 370 aaPredicted RBP26.75■■□□□ 1.87
CHMP1A-207ENST00000549328 ALS2Q96Q42 1657 aa26.75■■□□□ 1.87
CHMP1A-207ENST00000549328 PLEKHG3A1L390 1219 aa26.74■■□□□ 1.87
CHMP1A-207ENST00000549328 TRPM1Q7Z4N2 1603 aa26.74■■□□□ 1.87
CHMP1A-207ENST00000549328 TNKS1BP1Q9C0C2 1729 aaKnown RBP26.73■■□□□ 1.87
CHMP1A-207ENST00000549328 POLR3AO14802 1390 aaPredicted RBP26.73■■□□□ 1.87
CHMP1A-207ENST00000549328 PAK3O75914 559 aaPredicted RBP26.72■■□□□ 1.87
CHMP1A-207ENST00000549328 PLEKHG5O94827 1062 aa26.72■■□□□ 1.87
CHMP1A-207ENST00000549328 ABCA3Q99758 1704 aa26.72■■□□□ 1.87
CHMP1A-207ENST00000549328 SRPK2P78362 688 aaKnown RBP26.71■■□□□ 1.87
CHMP1A-207ENST00000549328 ROCK2O75116 1388 aaKnown RBP26.71■■□□□ 1.87
CHMP1A-207ENST00000549328 ACEP12821 1306 aa26.7■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms