RNA–Protein interactions for RNA: ENST00000549139.5

CHMP1A-206, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 812 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-206ENST00000549139 KIF1BO60333 1816 aa23.44■■□□□ 1.34
CHMP1A-206ENST00000549139 MYOM2P54296 1465 aa23.43■■□□□ 1.34
CHMP1A-206ENST00000549139 ACIN1Q9UKV3 1341 aaKnown RBP23.42■■□□□ 1.34
CHMP1A-206ENST00000549139 BCL9LQ86UU0 1499 aa23.4■■□□□ 1.34
CHMP1A-206ENST00000549139 VGFO15240 615 aaPredicted RBP23.39■■□□□ 1.33
CHMP1A-206ENST00000549139 ZRANB1Q9UGI0 708 aa23.39■■□□□ 1.33
CHMP1A-206ENST00000549139 PXDNQ92626 1479 aa23.36■■□□□ 1.33
CHMP1A-206ENST00000549139 CCDC125Q86Z20 511 aa23.36■■□□□ 1.33
CHMP1A-206ENST00000549139 SLC4A1APQ9BWU0 796 aaKnown RBP23.35■■□□□ 1.33
CHMP1A-206ENST00000549139 MARF1Q9Y4F3 1742 aaKnown RBP23.35■■□□□ 1.33
CHMP1A-206ENST00000549139 NPHP3Q7Z494 1330 aa23.34■■□□□ 1.33
CHMP1A-206ENST00000549139 FOXD1Q16676 465 aa23.34■■□□□ 1.33
CHMP1A-206ENST00000549139 RPGRIP1LQ68CZ1 1315 aa23.33■■□□□ 1.33
CHMP1A-206ENST00000549139 CDC42BPGQ6DT37 1551 aa23.33■■□□□ 1.33
CHMP1A-206ENST00000549139 GJD4Q96KN9 370 aaPredicted RBP23.32■■□□□ 1.32
CHMP1A-206ENST00000549139 RAB3GAP2Q9H2M9 1393 aa23.31■■□□□ 1.32
CHMP1A-206ENST00000549139 ESCO1Q5FWF5 840 aa23.31■■□□□ 1.32
CHMP1A-206ENST00000549139 PPLO60437 1756 aa23.31■■□□□ 1.32
CHMP1A-206ENST00000549139 HRCP23327 699 aa23.3■■□□□ 1.32
CHMP1A-206ENST00000549139 FOXO3O43524 673 aa23.29■■□□□ 1.32
CHMP1A-206ENST00000549139 MPHOSPH9Q99550 1183 aa23.29■■□□□ 1.32
CHMP1A-206ENST00000549139 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.28■■□□□ 1.32
CHMP1A-206ENST00000549139 XPCQ01831 940 aaPredicted RBP23.27■■□□□ 1.32
CHMP1A-206ENST00000549139 SLIT2O94813 1529 aa23.26■■□□□ 1.31
CHMP1A-206ENST00000549139 GLI3P10071 1580 aa23.26■■□□□ 1.31
CHMP1A-206ENST00000549139 TECPR2O15040 1411 aa23.24■■□□□ 1.31
CHMP1A-206ENST00000549139 RALGAPBQ86X10 1494 aa23.24■■□□□ 1.31
CHMP1A-206ENST00000549139 UNC5CLQ8IV45 518 aa23.23■■□□□ 1.31
CHMP1A-206ENST00000549139 LRPPRCP42704 1394 aaKnown RBP23.23■■□□□ 1.31
CHMP1A-206ENST00000549139 BLMP54132 1417 aaPredicted RBP23.23■■□□□ 1.31
CHMP1A-206ENST00000549139 WAPLQ7Z5K2 1190 aa23.21■■□□□ 1.31
CHMP1A-206ENST00000549139 BRWD3Q6RI45 1802 aa23.21■■□□□ 1.31
CHMP1A-206ENST00000549139 SPATA31A3Q5VYP0 1347 aa23.2■■□□□ 1.3
CHMP1A-206ENST00000549139 ADGRF5Q8IZF2 1346 aa23.2■■□□□ 1.3
CHMP1A-206ENST00000549139 NUTM2FA1L443 756 aa23.18■■□□□ 1.3
CHMP1A-206ENST00000549139 ABCC11Q96J66 1382 aa23.17■■□□□ 1.3
CHMP1A-206ENST00000549139 PLEKHH1Q9ULM0 1364 aa23.17■■□□□ 1.3
CHMP1A-206ENST00000549139 DEFB132Q7Z7B7 95 aa23.17■■□□□ 1.3
CHMP1A-206ENST00000549139 FMN2Q9NZ56 1722 aa23.16■■□□□ 1.3
CHMP1A-206ENST00000549139 USP32Q8NFA0 1604 aa23.16■■□□□ 1.3
CHMP1A-206ENST00000549139 STK26Q9P289 416 aa23.16■■□□□ 1.3
CHMP1A-206ENST00000549139 KNDC1Q76NI1 1749 aa23.15■■□□□ 1.3
CHMP1A-206ENST00000549139 KIF1AQ12756 1690 aa23.14■■□□□ 1.29
CHMP1A-206ENST00000549139 CCDC144AA2RUR9 1427 aa23.14■■□□□ 1.29
CHMP1A-206ENST00000549139 ONECUT3O60422 494 aaPredicted RBP23.13■■□□□ 1.29
CHMP1A-206ENST00000549139 SEPT12Q8IYM1 358 aa23.13■■□□□ 1.29
CHMP1A-206ENST00000549139 TRIM26Q12899 539 aaPredicted RBP23.12■■□□□ 1.29
CHMP1A-206ENST00000549139 SPATA31E1Q6ZUB1 1445 aa23.12■■□□□ 1.29
CHMP1A-206ENST00000549139 IFT172Q9UG01 1749 aa23.11■■□□□ 1.29
CHMP1A-206ENST00000549139 VPS72Q15906 364 aa23.11■■□□□ 1.29
CHMP1A-206ENST00000549139 TMEM132EQ6IEE7 984 aa23.11■■□□□ 1.29
CHMP1A-206ENST00000549139 KRT28Q7Z3Y7 464 aa23.11■■□□□ 1.29
CHMP1A-206ENST00000549139 LRP5O75197 1615 aa23.1■■□□□ 1.29
CHMP1A-206ENST00000549139 ANKRD30BQ9BXX2 1392 aa23.09■■□□□ 1.29
CHMP1A-206ENST00000549139 PIK3C2GO75747 1445 aa23.08■■□□□ 1.29
CHMP1A-206ENST00000549139 TNS3Q68CZ2 1445 aa23.08■■□□□ 1.29
CHMP1A-206ENST00000549139 NWD2Q9ULI1 1742 aa23.08■■□□□ 1.29
CHMP1A-206ENST00000549139 RGPD8O14715 1765 aaPredicted RBP23.08■■□□□ 1.29
CHMP1A-206ENST00000549139 YTHDC2Q9H6S0 1430 aaKnown RBP23.08■■□□□ 1.28
CHMP1A-206ENST00000549139 RGL3Q3MIN7 710 aa23.07■■□□□ 1.28
CHMP1A-206ENST00000549139 CABLES1Q8TDN4 633 aa23.07■■□□□ 1.28
CHMP1A-206ENST00000549139 SIRT1Q96EB6 747 aa23.07■■□□□ 1.28
CHMP1A-206ENST00000549139 PLCH1Q4KWH8 1693 aa23.06■■□□□ 1.28
CHMP1A-206ENST00000549139 SF3B2Q13435 895 aaKnown RBP23.06■■□□□ 1.28
CHMP1A-206ENST00000549139 PHF8Q9UPP1 1060 aa23.05■■□□□ 1.28
CHMP1A-206ENST00000549139 ABCA3Q99758 1704 aa23.05■■□□□ 1.28
CHMP1A-206ENST00000549139 KRT27Q7Z3Y8 459 aa23.04■■□□□ 1.28
CHMP1A-206ENST00000549139 SBNO1A3KN83 1393 aa23.03■■□□□ 1.28
CHMP1A-206ENST00000549139 NRXN1Q9ULB1 1477 aa23.03■■□□□ 1.28
CHMP1A-206ENST00000549139 PSME1Q06323 249 aa23.02■■□□□ 1.28
CHMP1A-206ENST00000549139 FAM83GA6ND36 823 aa23■■□□□ 1.27
CHMP1A-206ENST00000549139 HAP1P54257 671 aaPredicted RBP23■■□□□ 1.27
CHMP1A-206ENST00000549139 CCDC9Q9Y3X0 531 aaKnown RBP22.99■■□□□ 1.27
CHMP1A-206ENST00000549139 ARHGEF10O15013 1369 aa22.99■■□□□ 1.27
CHMP1A-206ENST00000549139 C14orf93Q9H972 538 aaKnown RBP22.98■■□□□ 1.27
CHMP1A-206ENST00000549139 NRAPQ86VF7 1730 aa22.98■■□□□ 1.27
CHMP1A-206ENST00000549139 PSDA5PKW4 1024 aaPredicted RBP22.97■■□□□ 1.27
CHMP1A-206ENST00000549139 PLEKHG5O94827 1062 aa22.95■■□□□ 1.26
CHMP1A-206ENST00000549139 BAG6P46379 1132 aa22.95■■□□□ 1.26
CHMP1A-206ENST00000549139 FAM98CQ17RN3 349 aaKnown RBP22.93■■□□□ 1.26
CHMP1A-206ENST00000549139 LMOD2Q6P5Q4 547 aa22.93■■□□□ 1.26
CHMP1A-206ENST00000549139 TRPM3Q9HCF6 1732 aaPredicted RBP22.92■■□□□ 1.26
CHMP1A-206ENST00000549139 CFAP70Q5T0N1 1121 aa22.92■■□□□ 1.26
CHMP1A-206ENST00000549139 ANKARQ7Z5J8 1434 aa22.91■■□□□ 1.26
CHMP1A-206ENST00000549139 DHX57Q6P158 1386 aaKnown RBP22.91■■□□□ 1.26
CHMP1A-206ENST00000549139 PRAM1Q96QH2 718 aa22.91■■□□□ 1.26
CHMP1A-206ENST00000549139 PMFBP1Q8TBY8 1022 aa22.9■■□□□ 1.26
CHMP1A-206ENST00000549139 BTG4Q9NY30 223 aa22.9■■□□□ 1.26
CHMP1A-206ENST00000549139 EN1Q05925 392 aaPredicted RBP22.89■■□□□ 1.25
CHMP1A-206ENST00000549139 SAFB2Q14151 953 aaKnown RBP eCLIP22.89■■□□□ 1.25
CHMP1A-206ENST00000549139 ALS2Q96Q42 1657 aa22.89■■□□□ 1.25
CHMP1A-206ENST00000549139 RGPD1P0DJD0 1748 aa22.88■■□□□ 1.25
CHMP1A-206ENST00000549139 DLC1Q96QB1 1528 aa22.88■■□□□ 1.25
CHMP1A-206ENST00000549139 A0A0G2JS52 829 aa22.88■■□□□ 1.25
CHMP1A-206ENST00000549139 MYT1Q01538 1121 aa22.88■■□□□ 1.25
CHMP1A-206ENST00000549139 DISP2A7MBM2 1401 aa22.88■■□□□ 1.25
CHMP1A-206ENST00000549139 COL14A1Q05707 1796 aaKnown RBP22.88■■□□□ 1.25
CHMP1A-206ENST00000549139 ADGRB2O60241 1585 aa22.88■■□□□ 1.25
CHMP1A-206ENST00000549139 SPATA31A5Q5VU36 1347 aa22.86■■□□□ 1.25
CHMP1A-206ENST00000549139 SPATA31A7Q8IWB4 1347 aa22.86■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms