RNA–Protein interactions for RNA: ENST00000546304.1

PRKDC-211, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 2

Gene PRKDC, Length 589 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-211ENST00000546304 ARIH1Q9Y4X5 557 aaPredicted RBP9.73□□□□□ -0.85
PRKDC-211ENST00000546304 PPP4R3BQ5MIZ7 849 aa9.72□□□□□ -0.85
PRKDC-211ENST00000546304 MAGI2Q86UL8 1455 aa9.72□□□□□ -0.85
PRKDC-211ENST00000546304 MLH3Q9UHC1 1453 aa9.72□□□□□ -0.85
PRKDC-211ENST00000546304 DPYSL4O14531 572 aa9.71□□□□□ -0.86
PRKDC-211ENST00000546304 RAPGEF3O95398 923 aa9.71□□□□□ -0.86
PRKDC-211ENST00000546304 DAPK1P53355 1430 aa9.71□□□□□ -0.86
PRKDC-211ENST00000546304 FOSBP53539 338 aa9.7□□□□□ -0.86
PRKDC-211ENST00000546304 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.7□□□□□ -0.86
PRKDC-211ENST00000546304 C9orf84Q5VXU9 1444 aa9.7□□□□□ -0.86
PRKDC-211ENST00000546304 REREQ9P2R6 1566 aa9.7□□□□□ -0.86
PRKDC-211ENST00000546304 SIGLEC1Q9BZZ2 1709 aa9.7□□□□□ -0.86
PRKDC-211ENST00000546304 ABCC5O15440 1437 aa9.69□□□□□ -0.86
PRKDC-211ENST00000546304 POTEEQ6S8J3 1075 aa9.69□□□□□ -0.86
PRKDC-211ENST00000546304 PLSCR2Q9NRY7 297 aa9.69□□□□□ -0.86
PRKDC-211ENST00000546304 YEATS2Q9ULM3 1422 aa9.69□□□□□ -0.86
PRKDC-211ENST00000546304 HNRNPMP52272 730 aaKnown RBP eCLIP9.68□□□□□ -0.86
PRKDC-211ENST00000546304 SPNS2Q8IVW8 549 aa9.68□□□□□ -0.86
PRKDC-211ENST00000546304 ZNF454Q8N9F8 522 aa9.68□□□□□ -0.86
PRKDC-211ENST00000546304 ADGRL2O95490 1459 aa9.67□□□□□ -0.86
PRKDC-211ENST00000546304 RTEL1-TNFRSF6BF6WH68 1400 aa9.67□□□□□ -0.86
PRKDC-211ENST00000546304 ARHGAP33O14559 1287 aa9.67□□□□□ -0.86
PRKDC-211ENST00000546304 FAM50AQ14320 339 aaKnown RBP9.67□□□□□ -0.86
PRKDC-211ENST00000546304 AFAP1Q8N556 730 aa9.67□□□□□ -0.86
PRKDC-211ENST00000546304 GCC2Q8IWJ2 1684 aa9.67□□□□□ -0.86
PRKDC-211ENST00000546304 SPAG9O60271 1321 aaKnown RBP9.66□□□□□ -0.86
PRKDC-211ENST00000546304 BCORL1Q5H9F3 1711 aa9.66□□□□□ -0.86
PRKDC-211ENST00000546304 SPDYE16A6NNV3 312 aaPredicted RBP9.66□□□□□ -0.86
PRKDC-211ENST00000546304 PTGER2P43116 358 aa9.66□□□□□ -0.86
PRKDC-211ENST00000546304 LSM11P83369 360 aaKnown RBP eCLIP9.66□□□□□ -0.86
PRKDC-211ENST00000546304 PDIA6Q15084 440 aa9.66□□□□□ -0.86
PRKDC-211ENST00000546304 EIF2AK4Q9P2K8 1649 aaKnown RBP9.66□□□□□ -0.86
PRKDC-211ENST00000546304 RSPH4AQ5TD94 716 aa9.65□□□□□ -0.86
PRKDC-211ENST00000546304 BCL2L12Q9HB09 334 aa9.65□□□□□ -0.86
PRKDC-211ENST00000546304 AXIN2Q9Y2T1 843 aa9.64□□□□□ -0.87
PRKDC-211ENST00000546304 DUOX2Q9NRD8 1548 aa9.64□□□□□ -0.87
PRKDC-211ENST00000546304 ATP10AO60312 1499 aa9.64□□□□□ -0.87
PRKDC-211ENST00000546304 A2MP01023 1474 aa9.64□□□□□ -0.87
PRKDC-211ENST00000546304 PTPRKQ15262 1439 aa9.64□□□□□ -0.87
PRKDC-211ENST00000546304 AGLP35573 1532 aa9.63□□□□□ -0.87
PRKDC-211ENST00000546304 PHF14O94880 888 aa9.63□□□□□ -0.87
PRKDC-211ENST00000546304 ZDHHC16Q969W1 377 aa9.63□□□□□ -0.87
PRKDC-211ENST00000546304 PCDHGA10Q9Y5H3 936 aa9.63□□□□□ -0.87
PRKDC-211ENST00000546304 RNF17Q9BXT8 1623 aaKnown RBP9.63□□□□□ -0.87
PRKDC-211ENST00000546304 KIF15Q9NS87 1388 aa9.63□□□□□ -0.87
PRKDC-211ENST00000546304 MYT1LQ9UL68 1186 aa9.62□□□□□ -0.87
PRKDC-211ENST00000546304 FER1L4A9Z1Z3 1794 aa9.62□□□□□ -0.87
PRKDC-211ENST00000546304 ROCK1Q13464 1354 aa9.62□□□□□ -0.87
PRKDC-211ENST00000546304 ANKRD30AQ9BXX3 1397 aa9.62□□□□□ -0.87
PRKDC-211ENST00000546304 DEPDC5O75140 1603 aa9.61□□□□□ -0.87
PRKDC-211ENST00000546304 TSPY4P0CV99 314 aa9.61□□□□□ -0.87
PRKDC-211ENST00000546304 TSPY10P0CW01 314 aa9.61□□□□□ -0.87
PRKDC-211ENST00000546304 HAP1P54257 671 aaPredicted RBP9.61□□□□□ -0.87
PRKDC-211ENST00000546304 ANKRD13DQ6ZTN6 518 aa9.61□□□□□ -0.87
PRKDC-211ENST00000546304 ARHGEF1Q92888 912 aaKnown RBP9.61□□□□□ -0.87
PRKDC-211ENST00000546304 FBXW7Q969H0 707 aa9.61□□□□□ -0.87
PRKDC-211ENST00000546304 NCOA1Q15788 1441 aa9.61□□□□□ -0.87
PRKDC-211ENST00000546304 ERBINQ96RT1 1412 aa9.61□□□□□ -0.87
PRKDC-211ENST00000546304 PSEN2P49810 448 aa9.6□□□□□ -0.87
PRKDC-211ENST00000546304 MMRN1Q13201 1228 aa9.6□□□□□ -0.87
PRKDC-211ENST00000546304 TYW1BQ6NUM6 668 aa9.6□□□□□ -0.87
PRKDC-211ENST00000546304 KCNK17Q96T54 332 aa9.6□□□□□ -0.87
PRKDC-211ENST00000546304 EPAS1Q99814 870 aa9.6□□□□□ -0.87
PRKDC-211ENST00000546304 ADAM33Q9BZ11 813 aa9.6□□□□□ -0.87
PRKDC-211ENST00000546304 PRDM15P57071 1507 aaPredicted RBP9.6□□□□□ -0.87
PRKDC-211ENST00000546304 MROH1Q8NDA8 1641 aa9.6□□□□□ -0.87
PRKDC-211ENST00000546304 ADAMTSL3P82987 1691 aa9.59□□□□□ -0.87
PRKDC-211ENST00000546304 TK2O00142 265 aa9.59□□□□□ -0.87
PRKDC-211ENST00000546304 KCNV2Q8TDN2 545 aa9.59□□□□□ -0.87
PRKDC-211ENST00000546304 MADDQ8WXG6 1647 aa9.59□□□□□ -0.87
PRKDC-211ENST00000546304 UNC13BO14795 1591 aa9.58□□□□□ -0.88
PRKDC-211ENST00000546304 ZC3H13Q5T200 1668 aaKnown RBP9.58□□□□□ -0.88
PRKDC-211ENST00000546304 HFM1A2PYH4 1435 aa9.58□□□□□ -0.88
PRKDC-211ENST00000546304 FAM135AQ9P2D6 1515 aa9.58□□□□□ -0.88
PRKDC-211ENST00000546304 PTPREP23469 700 aa9.58□□□□□ -0.88
PRKDC-211ENST00000546304 ITGAEP38570 1179 aa9.58□□□□□ -0.88
PRKDC-211ENST00000546304 DMRTA1Q5VZB9 504 aa9.58□□□□□ -0.88
PRKDC-211ENST00000546304 CHIC2Q9UKJ5 165 aa9.57□□□□□ -0.88
PRKDC-211ENST00000546304 DHX29Q7Z478 1369 aaKnown RBP9.57□□□□□ -0.88
PRKDC-211ENST00000546304 RIMS1Q86UR5 1692 aaKnown RBP9.57□□□□□ -0.88
PRKDC-211ENST00000546304 NAIPQ13075 1403 aa9.56□□□□□ -0.88
PRKDC-211ENST00000546304 ANKRD50Q9ULJ7 1429 aa9.56□□□□□ -0.88
PRKDC-211ENST00000546304 CEP152O94986 1710 aa9.56□□□□□ -0.88
PRKDC-211ENST00000546304 MROH2AA6NES4 1674 aa9.56□□□□□ -0.88
PRKDC-211ENST00000546304 ADGRD1Q6QNK2 874 aa9.56□□□□□ -0.88
PRKDC-211ENST00000546304 DDX12PQ92771 950 aa9.56□□□□□ -0.88
PRKDC-211ENST00000546304 SLC4A5Q9BY07 1137 aa9.56□□□□□ -0.88
PRKDC-211ENST00000546304 KDM5DQ9BY66 1539 aa9.56□□□□□ -0.88
PRKDC-211ENST00000546304 CLTCQ00610 1675 aaKnown RBP9.55□□□□□ -0.88
PRKDC-211ENST00000546304 ARID4BQ4LE39 1312 aaPredicted RBP9.55□□□□□ -0.88
PRKDC-211ENST00000546304 CAMSAP1Q5T5Y3 1602 aa9.54□□□□□ -0.88
PRKDC-211ENST00000546304 IQGAP3Q86VI3 1631 aa9.54□□□□□ -0.88
PRKDC-211ENST00000546304 RRP7BPQ9NSQ0 103 aa9.54□□□□□ -0.88
PRKDC-211ENST00000546304 VWDEQ8N2E2 1590 aa9.54□□□□□ -0.88
PRKDC-211ENST00000546304 ABCC3O15438 1527 aa9.53□□□□□ -0.88
PRKDC-211ENST00000546304 C3P01024 1663 aa9.52□□□□□ -0.89
PRKDC-211ENST00000546304 PPP1R3GB7ZBB8 358 aa9.52□□□□□ -0.89
PRKDC-211ENST00000546304 NBR1Q14596 966 aa9.52□□□□□ -0.89
PRKDC-211ENST00000546304 VSIG10Q8N0Z9 540 aa9.52□□□□□ -0.89
PRKDC-211ENST00000546304 VPS9D1Q9Y2B5 631 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms