RNA–Protein interactions for RNA: ENST00000544622.4

YBX3-216, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 685 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-216ENST00000544622 CDC42BPGQ6DT37 1551 aa16.6■□□□□ 0.25
YBX3-216ENST00000544622 PHLPP1O60346 1717 aa16.59■□□□□ 0.25
YBX3-216ENST00000544622 L3MBTL2Q969R5 705 aa16.58■□□□□ 0.24
YBX3-216ENST00000544622 ORAI2Q96SN7 254 aa16.58■□□□□ 0.24
YBX3-216ENST00000544622 JCADQ9P266 1359 aa16.57■□□□□ 0.24
YBX3-216ENST00000544622 PRAM1Q96QH2 718 aa16.57■□□□□ 0.24
YBX3-216ENST00000544622 TRAK1Q9UPV9 953 aa16.56■□□□□ 0.24
YBX3-216ENST00000544622 NHSL1Q5SYE7 1610 aa16.56■□□□□ 0.24
YBX3-216ENST00000544622 DDX17Q92841 729 aaKnown RBP16.55■□□□□ 0.24
YBX3-216ENST00000544622 NBPF1Q3BBV0 1214 aa16.54■□□□□ 0.24
YBX3-216ENST00000544622 ILDR2Q71H61 639 aa16.54■□□□□ 0.24
YBX3-216ENST00000544622 KIAA1210Q9ULL0 1709 aa16.53■□□□□ 0.24
YBX3-216ENST00000544622 SOS2Q07890 1332 aaPredicted RBP16.53■□□□□ 0.24
YBX3-216ENST00000544622 NEUROD1Q13562 356 aa16.52■□□□□ 0.24
YBX3-216ENST00000544622 LRRC59Q96AG4 307 aaKnown RBP16.52■□□□□ 0.24
YBX3-216ENST00000544622 SPATA31A6Q5VVP1 1343 aa16.51■□□□□ 0.23
YBX3-216ENST00000544622 ESCO1Q5FWF5 840 aa16.51■□□□□ 0.23
YBX3-216ENST00000544622 POGKQ9P215 609 aa16.51■□□□□ 0.23
YBX3-216ENST00000544622 RGS17Q9UGC6 210 aaPredicted RBP16.51■□□□□ 0.23
YBX3-216ENST00000544622 SAFB2Q14151 953 aaKnown RBP eCLIP16.5■□□□□ 0.23
YBX3-216ENST00000544622 FMN2Q9NZ56 1722 aa16.5■□□□□ 0.23
YBX3-216ENST00000544622 ADGRB2O60241 1585 aa16.49■□□□□ 0.23
YBX3-216ENST00000544622 SHPRHQ149N8 1683 aa16.49■□□□□ 0.23
YBX3-216ENST00000544622 NUTM2FA1L443 756 aa16.48■□□□□ 0.23
YBX3-216ENST00000544622 FOXO3O43524 673 aa16.47■□□□□ 0.23
YBX3-216ENST00000544622 ARHGEF28Q8N1W1 1705 aaKnown RBP16.47■□□□□ 0.23
YBX3-216ENST00000544622 NPHP3Q7Z494 1330 aa16.46■□□□□ 0.23
YBX3-216ENST00000544622 LRP6O75581 1613 aa16.46■□□□□ 0.23
YBX3-216ENST00000544622 PNPLA6Q8IY17 1366 aa16.46■□□□□ 0.23
YBX3-216ENST00000544622 PXDNQ92626 1479 aa16.46■□□□□ 0.23
YBX3-216ENST00000544622 WASLO00401 505 aaPredicted RBP16.45■□□□□ 0.22
YBX3-216ENST00000544622 NBPF8Q3BBV2 869 aa16.45■□□□□ 0.22
YBX3-216ENST00000544622 HIRIP3Q9BW71 556 aaPredicted RBP16.45■□□□□ 0.22
YBX3-216ENST00000544622 ANKARQ7Z5J8 1434 aa16.45■□□□□ 0.22
YBX3-216ENST00000544622 MINK1Q8N4C8 1332 aaPredicted RBP16.45■□□□□ 0.22
YBX3-216ENST00000544622 PHF23Q9BUL5 403 aaPredicted RBP16.44■□□□□ 0.22
YBX3-216ENST00000544622 USP32Q8NFA0 1604 aa16.44■□□□□ 0.22
YBX3-216ENST00000544622 PHF8Q9UPP1 1060 aa16.43■□□□□ 0.22
YBX3-216ENST00000544622 PRR36Q9H6K5 1346 aa16.43■□□□□ 0.22
YBX3-216ENST00000544622 TRPM1Q7Z4N2 1603 aa16.42■□□□□ 0.22
YBX3-216ENST00000544622 RGPD8O14715 1765 aaPredicted RBP16.41■□□□□ 0.22
YBX3-216ENST00000544622 KIF1AQ12756 1690 aa16.41■□□□□ 0.22
YBX3-216ENST00000544622 PCGF6Q9BYE7 350 aa16.41■□□□□ 0.22
YBX3-216ENST00000544622 TULP4Q9NRJ4 1543 aa16.4■□□□□ 0.22
YBX3-216ENST00000544622 GPRASP1Q5JY77 1395 aa16.4■□□□□ 0.22
YBX3-216ENST00000544622 EIF3AQ14152 1382 aaKnown RBP16.39■□□□□ 0.21
YBX3-216ENST00000544622 XPCQ01831 940 aaPredicted RBP16.39■□□□□ 0.21
YBX3-216ENST00000544622 POTEAQ6S8J7 498 aa16.39■□□□□ 0.21
YBX3-216ENST00000544622 SPATA31A3Q5VYP0 1347 aa16.39■□□□□ 0.21
YBX3-216ENST00000544622 TONSLQ96HA7 1378 aa16.38■□□□□ 0.21
YBX3-216ENST00000544622 COL22A1Q8NFW1 1626 aaPredicted RBP16.38■□□□□ 0.21
YBX3-216ENST00000544622 KRT28Q7Z3Y7 464 aa16.38■□□□□ 0.21
YBX3-216ENST00000544622 CDK19Q9BWU1 502 aa16.38■□□□□ 0.21
YBX3-216ENST00000544622 CENPJQ9HC77 1338 aaPredicted RBP16.38■□□□□ 0.21
YBX3-216ENST00000544622 ROCK2O75116 1388 aaKnown RBP16.38■□□□□ 0.21
YBX3-216ENST00000544622 NUTM2BA6NNL0 878 aaPredicted RBP16.37■□□□□ 0.21
YBX3-216ENST00000544622 NUTM2EB1AL46 878 aaPredicted RBP16.37■□□□□ 0.21
YBX3-216ENST00000544622 NUTM2AQ8IVF1 878 aaPredicted RBP16.37■□□□□ 0.21
YBX3-216ENST00000544622 PMFBP1Q8TBY8 1022 aa16.37■□□□□ 0.21
YBX3-216ENST00000544622 NUDT16Q96DE0 195 aaKnown RBP16.37■□□□□ 0.21
YBX3-216ENST00000544622 ATP7BP35670 1465 aa16.36■□□□□ 0.21
YBX3-216ENST00000544622 SBNO1A3KN83 1393 aa16.36■□□□□ 0.21
YBX3-216ENST00000544622 SOCS7O14512 581 aa16.35■□□□□ 0.21
YBX3-216ENST00000544622 PSME1Q06323 249 aa16.35■□□□□ 0.21
YBX3-216ENST00000544622 CLSPNQ9HAW4 1339 aa16.35■□□□□ 0.21
YBX3-216ENST00000544622 CCDC61Q9Y6R9 512 aa16.34■□□□□ 0.21
YBX3-216ENST00000544622 PLEKHG3A1L390 1219 aa16.33■□□□□ 0.2
YBX3-216ENST00000544622 MEX3CQ5U5Q3 659 aaKnown RBP16.33■□□□□ 0.2
YBX3-216ENST00000544622 TNS3Q68CZ2 1445 aa16.32■□□□□ 0.2
YBX3-216ENST00000544622 ZNF772Q68DY9 489 aaPredicted RBP16.32■□□□□ 0.2
YBX3-216ENST00000544622 RALGAPBQ86X10 1494 aa16.32■□□□□ 0.2
YBX3-216ENST00000544622 POLR3AO14802 1390 aaPredicted RBP16.31■□□□□ 0.2
YBX3-216ENST00000544622 TIMELESSQ9UNS1 1208 aa16.31■□□□□ 0.2
YBX3-216ENST00000544622 AFF2P51816 1311 aa16.3■□□□□ 0.2
YBX3-216ENST00000544622 ADAMTS2O95450 1211 aa16.3■□□□□ 0.2
YBX3-216ENST00000544622 FNBP4Q8N3X1 1017 aaPredicted RBP16.3■□□□□ 0.2
YBX3-216ENST00000544622 C8orf37Q96NL8 207 aa16.3■□□□□ 0.2
YBX3-216ENST00000544622 CARD11Q9BXL7 1154 aa16.3■□□□□ 0.2
YBX3-216ENST00000544622 QRICH2Q9H0J4 1663 aa16.3■□□□□ 0.2
YBX3-216ENST00000544622 TRPM3Q9HCF6 1732 aaPredicted RBP16.29■□□□□ 0.2
YBX3-216ENST00000544622 NGDNQ8NEJ9 315 aaKnown RBP16.29■□□□□ 0.2
YBX3-216ENST00000544622 CABP2Q9NPB3 220 aa16.29■□□□□ 0.2
YBX3-216ENST00000544622 TOPAZ1Q8N9V7 1692 aa16.29■□□□□ 0.2
YBX3-216ENST00000544622 ARHGEF10O15013 1369 aa16.28■□□□□ 0.2
YBX3-216ENST00000544622 SBNO2Q9Y2G9 1366 aa16.28■□□□□ 0.2
YBX3-216ENST00000544622 ITSN1Q15811 1721 aa16.28■□□□□ 0.2
YBX3-216ENST00000544622 ACEP12821 1306 aa16.27■□□□□ 0.2
YBX3-216ENST00000544622 SRPK2P78362 688 aaKnown RBP16.27■□□□□ 0.2
YBX3-216ENST00000544622 EVC2Q86UK5 1308 aa16.26■□□□□ 0.19
YBX3-216ENST00000544622 NGLY1Q96IV0 654 aa16.26■□□□□ 0.19
YBX3-216ENST00000544622 ALS2Q96Q42 1657 aa16.26■□□□□ 0.19
YBX3-216ENST00000544622 CABLES1Q8TDN4 633 aa16.25■□□□□ 0.19
YBX3-216ENST00000544622 PPIP5K1Q6PFW1 1433 aa16.25■□□□□ 0.19
YBX3-216ENST00000544622 BCL9LQ86UU0 1499 aa16.24■□□□□ 0.19
YBX3-216ENST00000544622 CABP1Q9NZU7 370 aa16.24■□□□□ 0.19
YBX3-216ENST00000544622 QTRT2Q9H974 415 aaKnown RBP16.23■□□□□ 0.19
YBX3-216ENST00000544622 RXRBP28702 533 aa16.22■□□□□ 0.19
YBX3-216ENST00000544622 LMOD2Q6P5Q4 547 aa16.22■□□□□ 0.19
YBX3-216ENST00000544622 TESK2Q96S53 571 aa16.22■□□□□ 0.19
YBX3-216ENST00000544622 USP21Q9UK80 565 aa16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 81.4 ms