RNA–Protein interactions for RNA: ENST00000543359.5

TNFRSF1A-215, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 3

Gene TNFRSF1A, Length 627 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-215ENST00000543359 LRP6O75581 1613 aa19.29■□□□□ 0.68
TNFRSF1A-215ENST00000543359 LAMC1P11047 1609 aa19.29■□□□□ 0.68
TNFRSF1A-215ENST00000543359 ORAI2Q96SN7 254 aa19.28■□□□□ 0.68
TNFRSF1A-215ENST00000543359 SPATA31A6Q5VVP1 1343 aa19.27■□□□□ 0.68
TNFRSF1A-215ENST00000543359 CDC42BPGQ6DT37 1551 aa19.27■□□□□ 0.67
TNFRSF1A-215ENST00000543359 POTEAQ6S8J7 498 aa19.26■□□□□ 0.67
TNFRSF1A-215ENST00000543359 DHX57Q6P158 1386 aaKnown RBP19.26■□□□□ 0.67
TNFRSF1A-215ENST00000543359 LRRC59Q96AG4 307 aaKnown RBP19.24■□□□□ 0.67
TNFRSF1A-215ENST00000543359 SOS2Q07890 1332 aaPredicted RBP19.24■□□□□ 0.67
TNFRSF1A-215ENST00000543359 ADGRB1O14514 1584 aa19.23■□□□□ 0.67
TNFRSF1A-215ENST00000543359 DCAF11Q8TEB1 546 aa19.22■□□□□ 0.67
TNFRSF1A-215ENST00000543359 STAC3Q96MF2 364 aa19.21■□□□□ 0.67
TNFRSF1A-215ENST00000543359 KDM2AQ9Y2K7 1162 aa19.21■□□□□ 0.67
TNFRSF1A-215ENST00000543359 PNPLA6Q8IY17 1366 aa19.2■□□□□ 0.66
TNFRSF1A-215ENST00000543359 DLC1Q96QB1 1528 aa19.19■□□□□ 0.66
TNFRSF1A-215ENST00000543359 FMN2Q9NZ56 1722 aa19.18■□□□□ 0.66
TNFRSF1A-215ENST00000543359 ESCO1Q5FWF5 840 aa19.18■□□□□ 0.66
TNFRSF1A-215ENST00000543359 PRAM1Q96QH2 718 aa19.17■□□□□ 0.66
TNFRSF1A-215ENST00000543359 NUTM2FA1L443 756 aa19.16■□□□□ 0.66
TNFRSF1A-215ENST00000543359 PXDNQ92626 1479 aa19.16■□□□□ 0.66
TNFRSF1A-215ENST00000543359 NUTM2BA6NNL0 878 aaPredicted RBP19.15■□□□□ 0.66
TNFRSF1A-215ENST00000543359 NUTM2EB1AL46 878 aaPredicted RBP19.15■□□□□ 0.66
TNFRSF1A-215ENST00000543359 NUTM2AQ8IVF1 878 aaPredicted RBP19.15■□□□□ 0.66
TNFRSF1A-215ENST00000543359 FOXO3O43524 673 aa19.13■□□□□ 0.65
TNFRSF1A-215ENST00000543359 MEX3CQ5U5Q3 659 aaKnown RBP19.13■□□□□ 0.65
TNFRSF1A-215ENST00000543359 NPHP3Q7Z494 1330 aa19.13■□□□□ 0.65
TNFRSF1A-215ENST00000543359 SAFB2Q14151 953 aaKnown RBP eCLIP19.12■□□□□ 0.65
TNFRSF1A-215ENST00000543359 TRAK1Q9UPV9 953 aa19.12■□□□□ 0.65
TNFRSF1A-215ENST00000543359 RGPD8O14715 1765 aaPredicted RBP19.11■□□□□ 0.65
TNFRSF1A-215ENST00000543359 COL22A1Q8NFW1 1626 aaPredicted RBP19.11■□□□□ 0.65
TNFRSF1A-215ENST00000543359 ZNF772Q68DY9 489 aaPredicted RBP19.1■□□□□ 0.65
TNFRSF1A-215ENST00000543359 POGKQ9P215 609 aa19.1■□□□□ 0.65
TNFRSF1A-215ENST00000543359 ADGRB2O60241 1585 aa19.1■□□□□ 0.65
TNFRSF1A-215ENST00000543359 XPCQ01831 940 aaPredicted RBP19.09■□□□□ 0.65
TNFRSF1A-215ENST00000543359 USP32Q8NFA0 1604 aa19.09■□□□□ 0.65
TNFRSF1A-215ENST00000543359 AFF2P51816 1311 aa19.08■□□□□ 0.65
TNFRSF1A-215ENST00000543359 KIF1AQ12756 1690 aa19.08■□□□□ 0.64
TNFRSF1A-215ENST00000543359 KIAA1210Q9ULL0 1709 aa19.06■□□□□ 0.64
TNFRSF1A-215ENST00000543359 HIRIP3Q9BW71 556 aaPredicted RBP19.06■□□□□ 0.64
TNFRSF1A-215ENST00000543359 PHF8Q9UPP1 1060 aa19.06■□□□□ 0.64
TNFRSF1A-215ENST00000543359 ARHGEF28Q8N1W1 1705 aaKnown RBP19.05■□□□□ 0.64
TNFRSF1A-215ENST00000543359 ADAMTS2O95450 1211 aa19.05■□□□□ 0.64
TNFRSF1A-215ENST00000543359 C8orf37Q96NL8 207 aa19.05■□□□□ 0.64
TNFRSF1A-215ENST00000543359 SIN3AQ96ST3 1273 aa19.05■□□□□ 0.64
TNFRSF1A-215ENST00000543359 SPATA31A3Q5VYP0 1347 aa19.04■□□□□ 0.64
TNFRSF1A-215ENST00000543359 NBPF1Q3BBV0 1214 aa19.04■□□□□ 0.64
TNFRSF1A-215ENST00000543359 KRT28Q7Z3Y7 464 aa19.04■□□□□ 0.64
TNFRSF1A-215ENST00000543359 ANKARQ7Z5J8 1434 aa19.04■□□□□ 0.64
TNFRSF1A-215ENST00000543359 MINK1Q8N4C8 1332 aaPredicted RBP19.03■□□□□ 0.64
TNFRSF1A-215ENST00000543359 PRR36Q9H6K5 1346 aa19.03■□□□□ 0.64
TNFRSF1A-215ENST00000543359 WASLO00401 505 aaPredicted RBP19.03■□□□□ 0.64
TNFRSF1A-215ENST00000543359 L3MBTL2Q969R5 705 aa19.03■□□□□ 0.64
TNFRSF1A-215ENST00000543359 FNBP4Q8N3X1 1017 aaPredicted RBP19.01■□□□□ 0.63
TNFRSF1A-215ENST00000543359 RXRBP28702 533 aa19■□□□□ 0.63
TNFRSF1A-215ENST00000543359 NGLY1Q96IV0 654 aa19■□□□□ 0.63
TNFRSF1A-215ENST00000543359 QTRT2Q9H974 415 aaKnown RBP19■□□□□ 0.63
TNFRSF1A-215ENST00000543359 TULP4Q9NRJ4 1543 aa19■□□□□ 0.63
TNFRSF1A-215ENST00000543359 PMFBP1Q8TBY8 1022 aa18.99■□□□□ 0.63
TNFRSF1A-215ENST00000543359 SBNO1A3KN83 1393 aa18.98■□□□□ 0.63
TNFRSF1A-215ENST00000543359 CDK12Q9NYV4 1490 aaPredicted RBP18.97■□□□□ 0.63
TNFRSF1A-215ENST00000543359 MARF1Q9Y4F3 1742 aaKnown RBP18.97■□□□□ 0.63
TNFRSF1A-215ENST00000543359 PSME1Q06323 249 aa18.97■□□□□ 0.63
TNFRSF1A-215ENST00000543359 TNS3Q68CZ2 1445 aa18.97■□□□□ 0.63
TNFRSF1A-215ENST00000543359 EIF3AQ14152 1382 aaKnown RBP18.96■□□□□ 0.63
TNFRSF1A-215ENST00000543359 TRPM3Q9HCF6 1732 aaPredicted RBP18.95■□□□□ 0.62
TNFRSF1A-215ENST00000543359 RBM6P78332 1123 aaKnown RBP18.95■□□□□ 0.62
TNFRSF1A-215ENST00000543359 ATP7BP35670 1465 aa18.95■□□□□ 0.62
TNFRSF1A-215ENST00000543359 BCL9LQ86UU0 1499 aa18.95■□□□□ 0.62
TNFRSF1A-215ENST00000543359 NEUROD1Q13562 356 aa18.94■□□□□ 0.62
TNFRSF1A-215ENST00000543359 NUDT16Q96DE0 195 aaKnown RBP18.94■□□□□ 0.62
TNFRSF1A-215ENST00000543359 CDK19Q9BWU1 502 aa18.94■□□□□ 0.62
TNFRSF1A-215ENST00000543359 USP21Q9UK80 565 aa18.94■□□□□ 0.62
TNFRSF1A-215ENST00000543359 ATRNO75882 1429 aa18.92■□□□□ 0.62
TNFRSF1A-215ENST00000543359 TRIM26Q12899 539 aaPredicted RBP18.92■□□□□ 0.62
TNFRSF1A-215ENST00000543359 CABLES1Q8TDN4 633 aa18.92■□□□□ 0.62
TNFRSF1A-215ENST00000543359 ALS2Q96Q42 1657 aa18.91■□□□□ 0.62
TNFRSF1A-215ENST00000543359 RGS12O14924 1447 aa18.91■□□□□ 0.62
TNFRSF1A-215ENST00000543359 TRPM1Q7Z4N2 1603 aa18.9■□□□□ 0.62
TNFRSF1A-215ENST00000543359 TRPC5Q9UL62 973 aaPredicted RBP18.9■□□□□ 0.62
TNFRSF1A-215ENST00000543359 ARHGEF10O15013 1369 aa18.9■□□□□ 0.62
TNFRSF1A-215ENST00000543359 SLIT2O94813 1529 aa18.9■□□□□ 0.62
TNFRSF1A-215ENST00000543359 ABCA3Q99758 1704 aa18.89■□□□□ 0.61
TNFRSF1A-215ENST00000543359 CENPJQ9HC77 1338 aaPredicted RBP18.89■□□□□ 0.61
TNFRSF1A-215ENST00000543359 EP400Q96L91 3159 aa18.89■□□□□ 0.61
TNFRSF1A-215ENST00000543359 ITSN1Q15811 1721 aa18.88■□□□□ 0.61
TNFRSF1A-215ENST00000543359 NBPF8Q3BBV2 869 aa18.88■□□□□ 0.61
TNFRSF1A-215ENST00000543359 TOPAZ1Q8N9V7 1692 aa18.88■□□□□ 0.61
TNFRSF1A-215ENST00000543359 PLEKHG3A1L390 1219 aa18.87■□□□□ 0.61
TNFRSF1A-215ENST00000543359 GPRASP1Q5JY77 1395 aa18.87■□□□□ 0.61
TNFRSF1A-215ENST00000543359 NGDNQ8NEJ9 315 aaKnown RBP18.87■□□□□ 0.61
TNFRSF1A-215ENST00000543359 UPF1Q92900 1129 aaKnown RBP eCLIP18.87■□□□□ 0.61
TNFRSF1A-215ENST00000543359 CCDC61Q9Y6R9 512 aa18.87■□□□□ 0.61
TNFRSF1A-215ENST00000543359 POLR3AO14802 1390 aaPredicted RBP18.86■□□□□ 0.61
TNFRSF1A-215ENST00000543359 LMOD2Q6P5Q4 547 aa18.86■□□□□ 0.61
TNFRSF1A-215ENST00000543359 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.86■□□□□ 0.61
TNFRSF1A-215ENST00000543359 UNC5CLQ8IV45 518 aa18.85■□□□□ 0.61
TNFRSF1A-215ENST00000543359 QRICH2Q9H0J4 1663 aa18.84■□□□□ 0.61
TNFRSF1A-215ENST00000543359 CRYBG1Q9Y4K1 1723 aa18.83■□□□□ 0.61
TNFRSF1A-215ENST00000543359 ACEP12821 1306 aa18.83■□□□□ 0.61
TNFRSF1A-215ENST00000543359 FAM83GA6ND36 823 aa18.83■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms