RNA–Protein interactions for RNA: ENST00000541713.5

PTPN1-202, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

TSL 2 BASIC

Gene PTPN1, Length 3,469 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-202ENST00000541713 BRPF3Q9ULD4 1205 aa17.39■□□□□ 0.37
PTPN1-202ENST00000541713 E9PCH4 1651 aa17.39■□□□□ 0.37
PTPN1-202ENST00000541713 MAPK8IP3Q9UPT6 1336 aa17.38■□□□□ 0.37
PTPN1-202ENST00000541713 ERVK-7P63135 1459 aa17.38■□□□□ 0.37
PTPN1-202ENST00000541713 C14orf93Q9H972 538 aaKnown RBP17.37■□□□□ 0.37
PTPN1-202ENST00000541713 CABP1Q9NZU7 370 aa17.37■□□□□ 0.37
PTPN1-202ENST00000541713 EVC2Q86UK5 1308 aa17.37■□□□□ 0.37
PTPN1-202ENST00000541713 NCKAP5LQ9HCH0 1330 aa17.37■□□□□ 0.37
PTPN1-202ENST00000541713 NKTRP30414 1462 aaKnown RBP17.36■□□□□ 0.37
PTPN1-202ENST00000541713 PDZRN3Q9UPQ7 1066 aa17.36■□□□□ 0.37
PTPN1-202ENST00000541713 ATP7AQ04656 1500 aa17.36■□□□□ 0.37
PTPN1-202ENST00000541713 MFAP1P55081 439 aaKnown RBP17.35■□□□□ 0.37
PTPN1-202ENST00000541713 RIPK4P57078 832 aa17.35■□□□□ 0.37
PTPN1-202ENST00000541713 VGFO15240 615 aaPredicted RBP17.35■□□□□ 0.37
PTPN1-202ENST00000541713 C1orf115Q9H7X2 142 aa17.35■□□□□ 0.37
PTPN1-202ENST00000541713 ZRANB1Q9UGI0 708 aa17.35■□□□□ 0.37
PTPN1-202ENST00000541713 CD109Q6YHK3 1445 aa17.35■□□□□ 0.37
PTPN1-202ENST00000541713 EIF2AK4Q9P2K8 1649 aaKnown RBP17.34■□□□□ 0.37
PTPN1-202ENST00000541713 ZFYVE16Q7Z3T8 1539 aa17.33■□□□□ 0.37
PTPN1-202ENST00000541713 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.33■□□□□ 0.37
PTPN1-202ENST00000541713 GZF1Q9H116 711 aaPredicted RBP17.33■□□□□ 0.36
PTPN1-202ENST00000541713 APBB1O00213 710 aa17.33■□□□□ 0.36
PTPN1-202ENST00000541713 MADDQ8WXG6 1647 aa17.32■□□□□ 0.36
PTPN1-202ENST00000541713 SLC24A1O60721 1099 aa17.32■□□□□ 0.36
PTPN1-202ENST00000541713 TRMT2AQ8IZ69 625 aaKnown RBP17.31■□□□□ 0.36
PTPN1-202ENST00000541713 FOXD4L1Q9NU39 408 aa17.31■□□□□ 0.36
PTPN1-202ENST00000541713 PTPRTO14522 1441 aa17.31■□□□□ 0.36
PTPN1-202ENST00000541713 PLXNC1O60486 1568 aa17.31■□□□□ 0.36
PTPN1-202ENST00000541713 NPATQ14207 1427 aa17.3■□□□□ 0.36
PTPN1-202ENST00000541713 SSH1Q8WYL5 1049 aa17.3■□□□□ 0.36
PTPN1-202ENST00000541713 NOB1Q9ULX3 412 aaKnown RBP17.3■□□□□ 0.36
PTPN1-202ENST00000541713 PIK3C2GO75747 1445 aa17.29■□□□□ 0.36
PTPN1-202ENST00000541713 CDK19Q9BWU1 502 aa17.29■□□□□ 0.36
PTPN1-202ENST00000541713 TRPM2O94759 1503 aa17.29■□□□□ 0.36
PTPN1-202ENST00000541713 MYH16Q9H6N6 1097 aa17.29■□□□□ 0.36
PTPN1-202ENST00000541713 DCTN1Q14203 1278 aa17.29■□□□□ 0.36
PTPN1-202ENST00000541713 DZIP1LQ8IYY4 767 aaKnown RBP17.28■□□□□ 0.36
PTPN1-202ENST00000541713 LNPKQ9C0E8 428 aa17.28■□□□□ 0.36
PTPN1-202ENST00000541713 RTEL1-TNFRSF6BF6WH68 1400 aa17.27■□□□□ 0.36
PTPN1-202ENST00000541713 FYB1O15117 783 aa17.27■□□□□ 0.36
PTPN1-202ENST00000541713 TMPOP42166 694 aaKnown RBP17.27■□□□□ 0.36
PTPN1-202ENST00000541713 RRS1Q15050 365 aaKnown RBP17.27■□□□□ 0.36
PTPN1-202ENST00000541713 ZKSCAN2Q63HK3 967 aa17.27■□□□□ 0.36
PTPN1-202ENST00000541713 STAC3Q96MF2 364 aa17.27■□□□□ 0.36
PTPN1-202ENST00000541713 PRKAR2BP31323 418 aa17.27■□□□□ 0.36
PTPN1-202ENST00000541713 PDE3AQ14432 1141 aa17.27■□□□□ 0.36
PTPN1-202ENST00000541713 UPF2Q9HAU5 1272 aaKnown RBP17.27■□□□□ 0.36
PTPN1-202ENST00000541713 FAM69CQ0P6D2 419 aa17.27■□□□□ 0.35
PTPN1-202ENST00000541713 TXNDC2Q86VQ3 553 aa17.27■□□□□ 0.35
PTPN1-202ENST00000541713 EMILIN1Q9Y6C2 1016 aa17.26■□□□□ 0.35
PTPN1-202ENST00000541713 GSE1Q14687 1217 aa17.26■□□□□ 0.35
PTPN1-202ENST00000541713 TRIM27P14373 513 aa17.25■□□□□ 0.35
PTPN1-202ENST00000541713 DIAPH1O60610 1272 aaKnown RBP17.25■□□□□ 0.35
PTPN1-202ENST00000541713 TMEM57Q8N5G2 664 aa17.25■□□□□ 0.35
PTPN1-202ENST00000541713 RWDD1Q9H446 243 aaPredicted RBP17.25■□□□□ 0.35
PTPN1-202ENST00000541713 FAM83GA6ND36 823 aa17.24■□□□□ 0.35
PTPN1-202ENST00000541713 HDGFL2Q7Z4V5 671 aaPredicted RBP17.24■□□□□ 0.35
PTPN1-202ENST00000541713 TERF2IPQ9NYB0 399 aa17.24■□□□□ 0.35
PTPN1-202ENST00000541713 PHACTR3Q96KR7 559 aa17.23■□□□□ 0.35
PTPN1-202ENST00000541713 A0A1W2PP64 1363 aa17.23■□□□□ 0.35
PTPN1-202ENST00000541713 NME9Q86XW9 330 aa17.22■□□□□ 0.35
PTPN1-202ENST00000541713 PMFBP1Q8TBY8 1022 aa17.22■□□□□ 0.35
PTPN1-202ENST00000541713 INSRP06213 1382 aa17.22■□□□□ 0.35
PTPN1-202ENST00000541713 SPHKAPQ2M3C7 1700 aa17.22■□□□□ 0.35
PTPN1-202ENST00000541713 SHROOM2Q13796 1616 aa17.21■□□□□ 0.35
PTPN1-202ENST00000541713 POLR3AO14802 1390 aaPredicted RBP17.21■□□□□ 0.35
PTPN1-202ENST00000541713 MVPQ14764 893 aaKnown RBP17.21■□□□□ 0.35
PTPN1-202ENST00000541713 ESF1Q9H501 851 aaKnown RBP17.21■□□□□ 0.35
PTPN1-202ENST00000541713 TRIM35Q9UPQ4 493 aa17.21■□□□□ 0.35
PTPN1-202ENST00000541713 ABCA6Q8N139 1617 aa17.21■□□□□ 0.35
PTPN1-202ENST00000541713 ANO8Q9HCE9 1232 aaPredicted RBP17.2■□□□□ 0.34
PTPN1-202ENST00000541713 TSPYL6Q8N831 410 aa17.2■□□□□ 0.34
PTPN1-202ENST00000541713 WDR63Q8IWG1 891 aa17.19■□□□□ 0.34
PTPN1-202ENST00000541713 SYNMO15061 1565 aa17.19■□□□□ 0.34
PTPN1-202ENST00000541713 KDM5AP29375 1690 aaKnown RBP17.18■□□□□ 0.34
PTPN1-202ENST00000541713 YEATS2Q9ULM3 1422 aa17.18■□□□□ 0.34
PTPN1-202ENST00000541713 KRT24Q2M2I5 525 aa17.18■□□□□ 0.34
PTPN1-202ENST00000541713 ANKRD45Q5TZF3 282 aa17.18■□□□□ 0.34
PTPN1-202ENST00000541713 USP19O94966 1318 aa17.18■□□□□ 0.34
PTPN1-202ENST00000541713 BECN1Q14457 450 aa17.18■□□□□ 0.34
PTPN1-202ENST00000541713 MIS18AQ9NYP9 233 aa17.17■□□□□ 0.34
PTPN1-202ENST00000541713 IQGAP1P46940 1657 aa17.17■□□□□ 0.34
PTPN1-202ENST00000541713 ZNF518AQ6AHZ1 1483 aa17.17■□□□□ 0.34
PTPN1-202ENST00000541713 EIF5BO60841 1220 aaKnown RBP17.17■□□□□ 0.34
PTPN1-202ENST00000541713 UHRF1BP1LA0JNW5 1464 aa17.16■□□□□ 0.34
PTPN1-202ENST00000541713 ATAD2Q6PL18 1390 aa17.16■□□□□ 0.34
PTPN1-202ENST00000541713 ZBTB7CA1YPR0 619 aa17.16■□□□□ 0.34
PTPN1-202ENST00000541713 ATF7IPQ6VMQ6 1270 aa17.16■□□□□ 0.34
PTPN1-202ENST00000541713 NPC1L1Q9UHC9 1359 aa17.15■□□□□ 0.34
PTPN1-202ENST00000541713 NECTIN2Q92692 538 aa17.15■□□□□ 0.34
PTPN1-202ENST00000541713 RNF17Q9BXT8 1623 aaKnown RBP17.15■□□□□ 0.34
PTPN1-202ENST00000541713 MAP3K4Q9Y6R4 1608 aa17.15■□□□□ 0.34
PTPN1-202ENST00000541713 NUTM2GQ5VZR2 741 aa17.15■□□□□ 0.34
PTPN1-202ENST00000541713 TBC1D2Q9BYX2 928 aa17.15■□□□□ 0.34
PTPN1-202ENST00000541713 CEP152O94986 1710 aa17.14■□□□□ 0.34
PTPN1-202ENST00000541713 USP35Q9P2H5 1018 aa17.14■□□□□ 0.33
PTPN1-202ENST00000541713 CLASP1Q7Z460 1538 aa17.14■□□□□ 0.33
PTPN1-202ENST00000541713 TET3O43151 1660 aa17.14■□□□□ 0.33
PTPN1-202ENST00000541713 HSP90AA1P07900 732 aaKnown RBP17.14■□□□□ 0.33
PTPN1-202ENST00000541713 PPRC1Q5VV67 1664 aaKnown RBP17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms