RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 MORC1Q86VD1 984 aa16.38■□□□□ 0.21
RNF4-222ENST00000541204 LAS1LQ9Y4W2 734 aaKnown RBP16.38■□□□□ 0.21
RNF4-222ENST00000541204 SETBP1Q9Y6X0 1596 aa16.37■□□□□ 0.21
RNF4-222ENST00000541204 SBNO2Q9Y2G9 1366 aa16.37■□□□□ 0.21
RNF4-222ENST00000541204 APAF1O14727 1248 aa16.37■□□□□ 0.21
RNF4-222ENST00000541204 ARHGAP31Q2M1Z3 1444 aa16.36■□□□□ 0.21
RNF4-222ENST00000541204 NEXMIFQ5QGS0 1516 aa16.36■□□□□ 0.21
RNF4-222ENST00000541204 NPC1L1Q9UHC9 1359 aa16.36■□□□□ 0.21
RNF4-222ENST00000541204 DIP2BQ9P265 1576 aa16.35■□□□□ 0.21
RNF4-222ENST00000541204 SRPK2P78362 688 aaKnown RBP16.35■□□□□ 0.21
RNF4-222ENST00000541204 GLI2P10070 1586 aa16.35■□□□□ 0.21
RNF4-222ENST00000541204 EVC2Q86UK5 1308 aa16.35■□□□□ 0.21
RNF4-222ENST00000541204 MINK1Q8N4C8 1332 aaPredicted RBP16.35■□□□□ 0.21
RNF4-222ENST00000541204 DUSP27Q5VZP5 1158 aa16.35■□□□□ 0.21
RNF4-222ENST00000541204 QRICH2Q9H0J4 1663 aa16.35■□□□□ 0.21
RNF4-222ENST00000541204 PIK3C2BO00750 1634 aa16.34■□□□□ 0.21
RNF4-222ENST00000541204 PRAM1Q96QH2 718 aa16.33■□□□□ 0.2
RNF4-222ENST00000541204 POGKQ9P215 609 aa16.33■□□□□ 0.2
RNF4-222ENST00000541204 MYO3AQ8NEV4 1616 aa16.33■□□□□ 0.2
RNF4-222ENST00000541204 GOLGA2Q08379 1002 aa16.32■□□□□ 0.2
RNF4-222ENST00000541204 NEUROD2Q15784 382 aa16.32■□□□□ 0.2
RNF4-222ENST00000541204 NEFMP07197 916 aa16.32■□□□□ 0.2
RNF4-222ENST00000541204 KDM2BQ8NHM5 1336 aa16.31■□□□□ 0.2
RNF4-222ENST00000541204 ZNF521Q96K83 1311 aa16.31■□□□□ 0.2
RNF4-222ENST00000541204 SPINK5Q9NQ38 1064 aaPredicted RBP16.31■□□□□ 0.2
RNF4-222ENST00000541204 MYO5BQ9ULV0 1848 aa16.29■□□□□ 0.2
RNF4-222ENST00000541204 MTHFSP49914 203 aa16.29■□□□□ 0.2
RNF4-222ENST00000541204 CGNL1Q0VF96 1302 aa16.29■□□□□ 0.2
RNF4-222ENST00000541204 ZC3H13Q5T200 1668 aaKnown RBP16.29■□□□□ 0.2
RNF4-222ENST00000541204 PREX1Q8TCU6 1659 aa16.29■□□□□ 0.2
RNF4-222ENST00000541204 RRP7AQ9Y3A4 280 aaKnown RBP16.29■□□□□ 0.2
RNF4-222ENST00000541204 DMRT2Q9Y5R5 561 aa16.28■□□□□ 0.2
RNF4-222ENST00000541204 TULP4Q9NRJ4 1543 aa16.28■□□□□ 0.2
RNF4-222ENST00000541204 CENPQQ7L2Z9 268 aaPredicted RBP16.28■□□□□ 0.2
RNF4-222ENST00000541204 ESF1Q9H501 851 aaKnown RBP16.27■□□□□ 0.2
RNF4-222ENST00000541204 SLFN5Q08AF3 891 aa16.26■□□□□ 0.19
RNF4-222ENST00000541204 TMEM131LA2VDJ0 1609 aa16.26■□□□□ 0.19
RNF4-222ENST00000541204 DDRGK1Q96HY6 314 aa16.26■□□□□ 0.19
RNF4-222ENST00000541204 GGNBP2Q9H3C7 697 aa16.26■□□□□ 0.19
RNF4-222ENST00000541204 WAPLQ7Z5K2 1190 aa16.25■□□□□ 0.19
RNF4-222ENST00000541204 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.25■□□□□ 0.19
RNF4-222ENST00000541204 ARHGEF28Q8N1W1 1705 aaKnown RBP16.25■□□□□ 0.19
RNF4-222ENST00000541204 PPM1GO15355 546 aaPredicted RBP16.25■□□□□ 0.19
RNF4-222ENST00000541204 USP35Q9P2H5 1018 aa16.25■□□□□ 0.19
RNF4-222ENST00000541204 YTHDC2Q9H6S0 1430 aaKnown RBP16.24■□□□□ 0.19
RNF4-222ENST00000541204 ANKRD36BQ8N2N9 1353 aa16.24■□□□□ 0.19
RNF4-222ENST00000541204 ZFYVE9O95405 1425 aa16.23■□□□□ 0.19
RNF4-222ENST00000541204 PLPPR3Q6T4P5 718 aa16.23■□□□□ 0.19
RNF4-222ENST00000541204 SLC4A3P48751 1232 aa16.23■□□□□ 0.19
RNF4-222ENST00000541204 A0A1W2PP64 1363 aa16.23■□□□□ 0.19
RNF4-222ENST00000541204 POLR3AO14802 1390 aaPredicted RBP16.23■□□□□ 0.19
RNF4-222ENST00000541204 CDK19Q9BWU1 502 aa16.22■□□□□ 0.19
RNF4-222ENST00000541204 CLTCQ00610 1675 aaKnown RBP16.22■□□□□ 0.19
RNF4-222ENST00000541204 TRMT2AQ8IZ69 625 aaKnown RBP16.22■□□□□ 0.19
RNF4-222ENST00000541204 BCAR3O75815 825 aa16.21■□□□□ 0.19
RNF4-222ENST00000541204 C8orf34Q49A92 452 aa16.21■□□□□ 0.19
RNF4-222ENST00000541204 CFAP53Q96M91 514 aa16.21■□□□□ 0.19
RNF4-222ENST00000541204 U2AF1L5P0DN76 240 aaPredicted RBP16.21■□□□□ 0.18
RNF4-222ENST00000541204 RGS3P49796 1198 aa16.21■□□□□ 0.18
RNF4-222ENST00000541204 U2AF1Q01081 240 aaKnown RBP eCLIP16.21■□□□□ 0.18
RNF4-222ENST00000541204 FAM161AQ3B820 660 aa16.21■□□□□ 0.18
RNF4-222ENST00000541204 CABP1Q9NZU7 370 aa16.21■□□□□ 0.18
RNF4-222ENST00000541204 PTPRMP28827 1452 aa16.2■□□□□ 0.18
RNF4-222ENST00000541204 WWC1Q8IX03 1113 aa16.2■□□□□ 0.18
RNF4-222ENST00000541204 TCP11L2Q8N4U5 519 aa16.2■□□□□ 0.18
RNF4-222ENST00000541204 NKTRP30414 1462 aaKnown RBP16.19■□□□□ 0.18
RNF4-222ENST00000541204 ALKQ9UM73 1620 aa16.18■□□□□ 0.18
RNF4-222ENST00000541204 U2SURPO15042 1029 aaKnown RBP16.18■□□□□ 0.18
RNF4-222ENST00000541204 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.18■□□□□ 0.18
RNF4-222ENST00000541204 PUS7Q96PZ0 661 aaKnown RBP16.18■□□□□ 0.18
RNF4-222ENST00000541204 TERF2IPQ9NYB0 399 aa16.18■□□□□ 0.18
RNF4-222ENST00000541204 RIMS2Q9UQ26 1411 aa16.18■□□□□ 0.18
RNF4-222ENST00000541204 E9PSI1 815 aa16.18■□□□□ 0.18
RNF4-222ENST00000541204 RUNDC1Q96C34 613 aa16.18■□□□□ 0.18
RNF4-222ENST00000541204 PPP6R1Q9UPN7 881 aa16.18■□□□□ 0.18
RNF4-222ENST00000541204 A2ML1A8K2U0 1454 aa16.18■□□□□ 0.18
RNF4-222ENST00000541204 FBLN1P23142 703 aa16.17■□□□□ 0.18
RNF4-222ENST00000541204 ZMYM3Q14202 1370 aa16.17■□□□□ 0.18
RNF4-222ENST00000541204 FYB1O15117 783 aa16.16■□□□□ 0.18
RNF4-222ENST00000541204 TXNDC2Q86VQ3 553 aa16.16■□□□□ 0.18
RNF4-222ENST00000541204 DAXXQ9UER7 740 aaPredicted RBP16.16■□□□□ 0.18
RNF4-222ENST00000541204 AGLP35573 1532 aa16.16■□□□□ 0.18
RNF4-222ENST00000541204 ATAD2Q6PL18 1390 aa16.15■□□□□ 0.18
RNF4-222ENST00000541204 HDGFL2Q7Z4V5 671 aaPredicted RBP16.15■□□□□ 0.18
RNF4-222ENST00000541204 IL27Q8NEV9 243 aa16.15■□□□□ 0.18
RNF4-222ENST00000541204 NFKBIBQ15653 356 aa16.14■□□□□ 0.17
RNF4-222ENST00000541204 ABCC11Q96J66 1382 aa16.14■□□□□ 0.17
RNF4-222ENST00000541204 NCKAP5LQ9HCH0 1330 aa16.12■□□□□ 0.17
RNF4-222ENST00000541204 IGHDP01880 384 aa16.12■□□□□ 0.17
RNF4-222ENST00000541204 CEBPAP49715 358 aaPredicted RBP16.12■□□□□ 0.17
RNF4-222ENST00000541204 METP08581 1390 aa16.12■□□□□ 0.17
RNF4-222ENST00000541204 SHPRHQ149N8 1683 aa16.12■□□□□ 0.17
RNF4-222ENST00000541204 CANXP27824 592 aaKnown RBP16.12■□□□□ 0.17
RNF4-222ENST00000541204 FRAT1Q92837 279 aaPredicted RBP16.12■□□□□ 0.17
RNF4-222ENST00000541204 NSD2O96028 1365 aa16.12■□□□□ 0.17
RNF4-222ENST00000541204 REREQ9P2R6 1566 aa16.12■□□□□ 0.17
RNF4-222ENST00000541204 BCL2L13Q9BXK5 485 aa16.11■□□□□ 0.17
RNF4-222ENST00000541204 SPATA31D1Q6ZQQ2 1576 aa16.11■□□□□ 0.17
RNF4-222ENST00000541204 CD163L1Q9NR16 1453 aa16.1■□□□□ 0.17
RNF4-222ENST00000541204 KIF13AQ9H1H9 1805 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms